Rw6G024650

cheY-homologous receiver domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0018377
Physical Location & Seq
Reverse (-)
47825516 .. 47826274
759 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G024650.1

Sequence Viewer

Length: 429 bp
ATGGCTGATGGAAATGCTAATGGTAACCAAGAAGGTGCTACGACTCCCTTAATGTCTTGGAACAACAACCTGAAAGCACTTCTGGTGGATCCATCACCCGCCCGTAGACTTATTGGGAAGGCATATCTCACGGCTTATGGTGTAAACACCGAGGCTGTGGACAATGCAGATGTTGCCATTATTCTGCTTAATATGGGAGCCAGTTTCAATGTGATTCTCATAGATATGCATATGCGAGAAATGAAAGGAGCGCAGTTTGCTATGCTGCTTCGGAGCTCGGGAGTACAGACCAAGCTGCTTGGTATGTCAACTATGTTTAGAGAACGTGAGAAAGAAGAGTTTCTGGAAGCTGGTGGTGATGGTTTTATTGAGAAGCCTCTTCATCCTTCCAAGTTTGTTCCAATCCTGCAAGAGCTGGATAGCAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Response_reg

Protein Analysis

142

Amino Acids

15.54

Weight (kDa)

5.14

Isoelectric Point (pI)

45.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Response_reg PF00072 27 - 133 1.7e-13 Response regulator receiver domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018377)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g19811
rosa_chinensis RchiOBHm_Chr6g0285531
rosa_laevigata RLG00000012630
rosa_roxburghii Rroxscaffold_7G00183050
rosa_rugosa Rorug06G0175200
rosa_samantha Rh6AG286800 Rh6BG288000 Rh6CG289200 Rh6DG282000
rosa_wichuraiana Rw6G024650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 106
AciI CCGC 1 cut(s) 99
AclWI GGATC 2 cut(s) 83, 96
AfaI GTAC 1 cut(s) 285
AgsI TTSAA 1 cut(s) 208
AluBI AGCT 4 cut(s) 276, 295, 350, 415
AluI AGCT 4 cut(s) 276, 295, 350, 415
Alw21I GWGCWC 1 cut(s) 278
AlwI GGATC 2 cut(s) 83, 96
Ama87I CYCGRG 1 cut(s) 277
ApeKI GCWGC 2 cut(s) 265, 295
Asp700I GAANNNNTTC 1 cut(s) 339
AspLEI GCGC 1 cut(s) 253
AsuHPI GGTGA 2 cut(s) 87, 368
AvaI CYCGRG 1 cut(s) 277
BamHI GGATCC 1 cut(s) 88
BanII GRGCYC 1 cut(s) 278
Bbv12I GWGCWC 1 cut(s) 278
BbvI GCAGC 2 cut(s) 252, 282
BccI CCATC 3 cut(s) 2, 100, 353
BceAI ACGGC 1 cut(s) 147
BisI GCNGC 2 cut(s) 266, 296
BlsI GCNGC 2 cut(s) 267, 297
BmeT110I CYCGRG 1 cut(s) 277
BmiI GGNNCC 2 cut(s) 90, 199
BsaJI CCNNGG 1 cut(s) 150
Bse1I ACTGG 1 cut(s) 201
BseDI CCNNGG 1 cut(s) 150
BseGI GGATG 1 cut(s) 382
BseNI ACTGG 1 cut(s) 201
BseXI GCAGC 2 cut(s) 252, 282
BsiHKAI GWGCWC 1 cut(s) 278
BsiHKCI CYCGRG 1 cut(s) 277
BsoBI CYCGRG 1 cut(s) 277
Bsp1286I GDGCHC 1 cut(s) 278
Bsp143I GATC 1 cut(s) 88
BspACI CCGC 1 cut(s) 99
BspLI GGNNCC 2 cut(s) 90, 199
BspPI GGATC 2 cut(s) 83, 96
BsrI ACTGG 1 cut(s) 201
BssECI CCNNGG 1 cut(s) 150
BssMI GATC 1 cut(s) 88
Bst6I CTCTTC 2 cut(s) 330, 384
BstAPI GCANNNNNTGC 1 cut(s) 173
BstEII GGTNACC 1 cut(s) 23
BstF5I GGATG 1 cut(s) 382
BstHHI GCGC 1 cut(s) 253
BstKTI GATC 1 cut(s) 91
BstMBI GATC 1 cut(s) 88
BstMWI GCNNNNNNNGC 2 cut(s) 173, 257
BstPI GGTNACC 1 cut(s) 23
BstV1I GCAGC 2 cut(s) 252, 282
BstX2I RGATCY 1 cut(s) 88
BstYI RGATCY 1 cut(s) 88
BtsCI GGATG 1 cut(s) 382
CfoI GCGC 1 cut(s) 253
Csp6I GTAC 1 cut(s) 284
CviJI RGCY 9 cut(s) 5, 134, 155, 200, 276, 295, 350, 376, 415
CviKI_1 RGCY 9 cut(s) 5, 134, 155, 200, 276, 295, 350, 376, 415
CviQI GTAC 1 cut(s) 284
DpnI GATC 1 cut(s) 90
DpnII GATC 1 cut(s) 88
Eam1104I CTCTTC 2 cut(s) 330, 384
EarI CTCTTC 2 cut(s) 330, 384
Ecl136II GAGCTC 1 cut(s) 276
Eco24I GRGCYC 1 cut(s) 278
Eco53kI GAGCTC 1 cut(s) 276
Eco88I CYCGRG 1 cut(s) 277
Eco91I GGTNACC 1 cut(s) 23
EcoICRI GAGCTC 1 cut(s) 276
EcoO65I GGTNACC 1 cut(s) 23
EcoT22I ATGCAT 1 cut(s) 231
EcoT38I GRGCYC 1 cut(s) 278
FauI CCCGC 1 cut(s) 106
FauNDI CATATG 1 cut(s) 231
FblI GTMKAC 1 cut(s) 106
Fnu4HI GCNGC 2 cut(s) 266, 296
FokI GGATG 1 cut(s) 369
FriOI GRGCYC 1 cut(s) 278
Fsp4HI GCNGC 2 cut(s) 266, 296
GlaI GCGC 1 cut(s) 252
GluI GCNGC 2 cut(s) 266, 296
HhaI GCGC 1 cut(s) 253
Hin6I GCGC 1 cut(s) 251
HinP1I GCGC 1 cut(s) 251
HincII GTYRAC 1 cut(s) 309
HindII GTYRAC 1 cut(s) 309
HinfI GANTC 2 cut(s) 43, 214
HphI GGTGA 2 cut(s) 87, 368
Hpy166II GTNNAC 4 cut(s) 107, 145, 160, 309
Hpy188I TCNGA 1 cut(s) 273
Hpy188III TCNNGA 2 cut(s) 279, 344
Hpy8I GTNNAC 4 cut(s) 107, 145, 160, 309
HpyAV CCTTC 3 cut(s) 26, 112, 396
HpyCH4IV ACGT 1 cut(s) 325
HpyCH4V TGCA 3 cut(s) 167, 229, 409
HpyF10VI GCNNNNNNNGC 2 cut(s) 173, 257
HpySE526I ACGT 1 cut(s) 325
HspAI GCGC 1 cut(s) 251
Kzo9I GATC 1 cut(s) 88
LmnI GCTCC 3 cut(s) 197, 248, 273
LpnPI CCDG 7 cut(s) 68, 83, 214, 329, 336, 401, 419
Lsp1109I GCAGC 2 cut(s) 252, 282
MaeII ACGT 1 cut(s) 325
MaeIII GTNAC 1 cut(s) 23
MalI GATC 1 cut(s) 90
MboI GATC 1 cut(s) 88
MboII GAAGA 2 cut(s) 347, 371
MflI RGATCY 1 cut(s) 88
MhlI GDGCHC 1 cut(s) 278
MlyI GAGTC 1 cut(s) 37
MnlI CCTC 2 cut(s) 145, 387
Mph1103I ATGCAT 1 cut(s) 231
MroXI GAANNNNTTC 1 cut(s) 339
MseI TTAA 2 cut(s) 50, 189
MslI CAYNNNNRTG 1 cut(s) 224
MwoI GCNNNNNNNGC 2 cut(s) 173, 257
NdeI CATATG 1 cut(s) 231
NdeII GATC 1 cut(s) 88
NlaIV GGNNCC 2 cut(s) 90, 199
NsiI ATGCAT 1 cut(s) 231
PdmI GAANNNNTTC 1 cut(s) 339
PfeI GAWTC 1 cut(s) 214
PkrI GCNGC 2 cut(s) 267, 297
PleI GAGTC 1 cut(s) 37
PpsI GAGTC 1 cut(s) 37
Psp124BI GAGCTC 1 cut(s) 278
PspEI GGTNACC 1 cut(s) 23
PspN4I GGNNCC 2 cut(s) 90, 199
PsuI RGATCY 1 cut(s) 88
RsaI GTAC 1 cut(s) 285
RsaNI GTAC 1 cut(s) 284
RseI CAYNNNNRTG 1 cut(s) 224
SacI GAGCTC 1 cut(s) 278
SaqAI TTAA 2 cut(s) 50, 189
SatI GCNGC 2 cut(s) 266, 296
Sau3AI GATC 1 cut(s) 88
SchI GAGTC 1 cut(s) 37
SduI GDGCHC 1 cut(s) 278
SetI ASST 7 cut(s) 37, 72, 278, 297, 328, 352, 417
SmiMI CAYNNNNRTG 1 cut(s) 224
SsiI CCGC 1 cut(s) 99
SstI GAGCTC 1 cut(s) 278
TaiI ACGT 1 cut(s) 328
TatI WGTACW 1 cut(s) 283
TfiI GAWTC 1 cut(s) 214
Tru1I TTAA 2 cut(s) 50, 189
Tru9I TTAA 2 cut(s) 50, 189
TseI GCWGC 2 cut(s) 265, 295
TspDTI ATGAA 2 cut(s) 257, 371
XmiI GTMKAC 1 cut(s) 106
XmnI GAANNNNTTC 1 cut(s) 339
Zsp2I ATGCAT 1 cut(s) 231
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.