Rh6DG282000

cheY-homologous receiver domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0018377
Physical Location & Seq
Reverse (-)
47638760 .. 47639689
930 bp
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UTR
Exon/CDS
Intron
Rh6DG282000.1

Sequence Viewer

Length: 429 bp
ATGGCTGATGGAAATGCTAATGGTAACCAAGAAGGTGCTACGACTCCCCTAATGTCTTGGAACAACAACCTGAAAGCACTTCTGGTGGATCCATCACCCGCCTGTAGACTTATTGGGAAGGCATATCTCACGGCCTATGGTGTAAACACCGAGGCTGTGGACAATGCAGATGTTGCCATTATTCTGCTTAATATGGGAGCCAGTTTCAATGTGATTCTCATAGATATGCATATGCGAGAAATGAACGGAGCGCAGTTTGCTATGCTGCTTCGGAGCTTGGGGGTACAGACCAAGCTGCTTGGTATGTCAACTATGTTTAGAGAACGTGAGAAAGAAGAGTTTCTGGAAGCTGGGGGTGATGGTTTTATTGAGAAGCCTCTTCATCCTTCCAAGTTTGTTCCAATCCTGCAAGAGCTGGATAGCAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Response_reg

Protein Analysis

142

Amino Acids

15.5

Weight (kDa)

4.81

Isoelectric Point (pI)

42.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Response_reg PF00072 27 - 133 4e-14 Response regulator receiver domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018377)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g19811
rosa_chinensis RchiOBHm_Chr6g0285531
rosa_laevigata RLG00000012630
rosa_roxburghii Rroxscaffold_7G00183050
rosa_rugosa Rorug06G0175200
rosa_samantha Rh6AG286800 Rh6BG288000 Rh6CG289200 Rh6DG282000
rosa_wichuraiana Rw6G024650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 106
AciI CCGC 1 cut(s) 99
AclWI GGATC 2 cut(s) 83, 96
AfaI GTAC 1 cut(s) 285
AgsI TTSAA 1 cut(s) 208
AluBI AGCT 4 cut(s) 276, 295, 350, 415
AluI AGCT 4 cut(s) 276, 295, 350, 415
AlwI GGATC 2 cut(s) 83, 96
AoxI GGCC 1 cut(s) 132
ApeKI GCWGC 2 cut(s) 265, 295
Asp700I GAANNNNTTC 1 cut(s) 339
AspLEI GCGC 1 cut(s) 253
AsuHPI GGTGA 2 cut(s) 87, 368
BamHI GGATCC 1 cut(s) 88
BbvI GCAGC 2 cut(s) 252, 282
BccI CCATC 3 cut(s) 2, 100, 353
BceAI ACGGC 1 cut(s) 147
BfmI CTRYAG 1 cut(s) 103
BisI GCNGC 2 cut(s) 266, 296
BlsI GCNGC 2 cut(s) 267, 297
BmiI GGNNCC 2 cut(s) 90, 199
BsaJI CCNNGG 1 cut(s) 150
Bse1I ACTGG 1 cut(s) 201
BseDI CCNNGG 1 cut(s) 150
BseGI GGATG 1 cut(s) 382
BseNI ACTGG 1 cut(s) 201
BseXI GCAGC 2 cut(s) 252, 282
BseYI CCCAGC 1 cut(s) 350
BshFI GGCC 1 cut(s) 134
BsnI GGCC 1 cut(s) 134
Bsp143I GATC 1 cut(s) 88
BspACI CCGC 1 cut(s) 99
BspANI GGCC 1 cut(s) 134
BspLI GGNNCC 2 cut(s) 90, 199
BspPI GGATC 2 cut(s) 83, 96
BsrI ACTGG 1 cut(s) 201
BssECI CCNNGG 1 cut(s) 150
BssMI GATC 1 cut(s) 88
Bst6I CTCTTC 2 cut(s) 330, 384
BstAPI GCANNNNNTGC 1 cut(s) 173
BstEII GGTNACC 1 cut(s) 23
BstF5I GGATG 1 cut(s) 382
BstHHI GCGC 1 cut(s) 253
BstKTI GATC 1 cut(s) 91
BstMBI GATC 1 cut(s) 88
BstMWI GCNNNNNNNGC 2 cut(s) 173, 257
BstPI GGTNACC 1 cut(s) 23
BstSFI CTRYAG 1 cut(s) 103
BstV1I GCAGC 2 cut(s) 252, 282
BstX2I RGATCY 1 cut(s) 88
BstYI RGATCY 1 cut(s) 88
BsuRI GGCC 1 cut(s) 134
BtsCI GGATG 1 cut(s) 382
CfoI GCGC 1 cut(s) 253
Csp6I GTAC 1 cut(s) 284
CviJI RGCY 9 cut(s) 5, 134, 155, 200, 276, 295, 350, 376, 415
CviKI_1 RGCY 9 cut(s) 5, 134, 155, 200, 276, 295, 350, 376, 415
CviQI GTAC 1 cut(s) 284
DpnI GATC 1 cut(s) 90
DpnII GATC 1 cut(s) 88
Eam1104I CTCTTC 2 cut(s) 330, 384
EarI CTCTTC 2 cut(s) 330, 384
Eco91I GGTNACC 1 cut(s) 23
EcoO65I GGTNACC 1 cut(s) 23
EcoT22I ATGCAT 1 cut(s) 231
FauI CCCGC 1 cut(s) 106
FauNDI CATATG 1 cut(s) 231
FblI GTMKAC 1 cut(s) 106
Fnu4HI GCNGC 2 cut(s) 266, 296
FokI GGATG 1 cut(s) 369
Fsp4HI GCNGC 2 cut(s) 266, 296
GlaI GCGC 1 cut(s) 252
GluI GCNGC 2 cut(s) 266, 296
GsaI CCCAGC 1 cut(s) 354
HaeIII GGCC 1 cut(s) 134
HhaI GCGC 1 cut(s) 253
Hin6I GCGC 1 cut(s) 251
HinP1I GCGC 1 cut(s) 251
HincII GTYRAC 1 cut(s) 309
HindII GTYRAC 1 cut(s) 309
HinfI GANTC 2 cut(s) 43, 214
HphI GGTGA 2 cut(s) 87, 368
Hpy166II GTNNAC 4 cut(s) 107, 145, 160, 309
Hpy188I TCNGA 1 cut(s) 273
Hpy188III TCNNGA 1 cut(s) 344
Hpy8I GTNNAC 4 cut(s) 107, 145, 160, 309
HpyAV CCTTC 3 cut(s) 26, 112, 396
HpyCH4IV ACGT 1 cut(s) 325
HpyCH4V TGCA 3 cut(s) 167, 229, 409
HpyF10VI GCNNNNNNNGC 2 cut(s) 173, 257
HpySE526I ACGT 1 cut(s) 325
HspAI GCGC 1 cut(s) 251
Kzo9I GATC 1 cut(s) 88
LmnI GCTCC 3 cut(s) 197, 248, 273
LpnPI CCDG 8 cut(s) 68, 83, 115, 214, 329, 336, 401, 419
Lsp1109I GCAGC 2 cut(s) 252, 282
MaeII ACGT 1 cut(s) 325
MaeIII GTNAC 1 cut(s) 23
MalI GATC 1 cut(s) 90
MboI GATC 1 cut(s) 88
MboII GAAGA 2 cut(s) 347, 371
MflI RGATCY 1 cut(s) 88
MlyI GAGTC 1 cut(s) 37
MnlI CCTC 2 cut(s) 145, 387
Mph1103I ATGCAT 1 cut(s) 231
MroXI GAANNNNTTC 1 cut(s) 339
MseI TTAA 1 cut(s) 189
MslI CAYNNNNRTG 1 cut(s) 224
MwoI GCNNNNNNNGC 2 cut(s) 173, 257
NdeI CATATG 1 cut(s) 231
NdeII GATC 1 cut(s) 88
NlaIV GGNNCC 2 cut(s) 90, 199
NsiI ATGCAT 1 cut(s) 231
PdmI GAANNNNTTC 1 cut(s) 339
PfeI GAWTC 1 cut(s) 214
PkrI GCNGC 2 cut(s) 267, 297
PleI GAGTC 1 cut(s) 37
PpsI GAGTC 1 cut(s) 37
PspEI GGTNACC 1 cut(s) 23
PspFI CCCAGC 1 cut(s) 350
PspN4I GGNNCC 2 cut(s) 90, 199
PsuI RGATCY 1 cut(s) 88
RsaI GTAC 1 cut(s) 285
RsaNI GTAC 1 cut(s) 284
RseI CAYNNNNRTG 1 cut(s) 224
SaqAI TTAA 1 cut(s) 189
SatI GCNGC 2 cut(s) 266, 296
Sau3AI GATC 1 cut(s) 88
SchI GAGTC 1 cut(s) 37
SetI ASST 7 cut(s) 37, 72, 278, 297, 328, 352, 417
SfcI CTRYAG 1 cut(s) 103
SmiMI CAYNNNNRTG 1 cut(s) 224
SsiI CCGC 1 cut(s) 99
TaiI ACGT 1 cut(s) 328
TfiI GAWTC 1 cut(s) 214
Tru1I TTAA 1 cut(s) 189
Tru9I TTAA 1 cut(s) 189
TseI GCWGC 2 cut(s) 265, 295
TspDTI ATGAA 2 cut(s) 257, 371
TspGWI ACGGA 1 cut(s) 261
XmiI GTMKAC 1 cut(s) 106
XmnI GAANNNNTTC 1 cut(s) 339
Zsp2I ATGCAT 1 cut(s) 231
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.