RchiOBHm_Chr6g0285531

cheY-homologous receiver domain

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Reverse (-)
48896921 .. 48899061
2141 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ25611

Sequence Viewer

Length: 288 bp
ATGAAGAATCCTATATACCAGACATCAGACAGCAATGTAATATTCGGCTATTTTAAGAGGATGCTGCAAGGAAACATGCAAAACTGGCTTACAACCAGAAGTATAAGCCCACTGTTTGCTATGCTGCTTCGGAGCTTGGGGGTACAGACCAAGCTGCTTGGTATGTCAACTATGTTTAGAGAACGTGAGAAAGAAGAGTTTCTGGAAGCTGGGGGTGATGGTTTTATTGAGAAGCCTCTTCATCCTTCCAAGTTTGTTCCAATCCTGCAAGAGCTGGATAGCAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

95

Amino Acids

10.95

Weight (kDa)

8.06

Isoelectric Point (pI)

55.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0018377)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g19811
rosa_chinensis RchiOBHm_Chr6g0285531
rosa_laevigata RLG00000012630
rosa_roxburghii Rroxscaffold_7G00183050
rosa_rugosa Rorug06G0175200
rosa_samantha Rh6AG286800 Rh6BG288000 Rh6CG289200 Rh6DG282000
rosa_wichuraiana Rw6G024650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 144
AluBI AGCT 4 cut(s) 135, 154, 209, 274
AluI AGCT 4 cut(s) 135, 154, 209, 274
ApeKI GCWGC 3 cut(s) 64, 124, 154
Asp700I GAANNNNTTC 1 cut(s) 198
AsuHPI GGTGA 1 cut(s) 227
BbvI GCAGC 3 cut(s) 51, 111, 141
BccI CCATC 1 cut(s) 212
BisI GCNGC 3 cut(s) 65, 125, 155
BlsI GCNGC 3 cut(s) 66, 126, 156
BmsI GCATC 1 cut(s) 51
Bse1I ACTGG 1 cut(s) 89
Bse3DI GCAATG 1 cut(s) 40
BseGI GGATG 2 cut(s) 66, 241
BseMI GCAATG 1 cut(s) 40
BseNI ACTGG 1 cut(s) 89
BseXI GCAGC 3 cut(s) 51, 111, 141
BseYI CCCAGC 1 cut(s) 209
BsrDI GCAATG 1 cut(s) 40
BsrI ACTGG 1 cut(s) 89
Bst4CI ACNGT 1 cut(s) 114
Bst6I CTCTTC 2 cut(s) 189, 243
BstF5I GGATG 2 cut(s) 66, 241
BstMWI GCNNNNNNNGC 1 cut(s) 85
BstNSI RCATGY 1 cut(s) 79
BstV1I GCAGC 3 cut(s) 51, 111, 141
BtsCI GGATG 2 cut(s) 66, 241
BtsIMutI CAGTG 1 cut(s) 110
Csp6I GTAC 1 cut(s) 143
CviAII CATG 1 cut(s) 76
CviJI RGCY 8 cut(s) 48, 88, 108, 135, 154, 209, 235, 274
CviKI_1 RGCY 8 cut(s) 48, 88, 108, 135, 154, 209, 235, 274
CviQI GTAC 1 cut(s) 143
Eam1104I CTCTTC 2 cut(s) 189, 243
EarI CTCTTC 2 cut(s) 189, 243
FaeI CATG 1 cut(s) 79
FaiI YATR 7 cut(s) 14, 16, 77, 104, 122, 164, 173
FatI CATG 1 cut(s) 75
Fnu4HI GCNGC 3 cut(s) 65, 125, 155
FokI GGATG 2 cut(s) 73, 228
Fsp4HI GCNGC 3 cut(s) 65, 125, 155
GluI GCNGC 3 cut(s) 65, 125, 155
GsaI CCCAGC 1 cut(s) 213
Hin1II CATG 1 cut(s) 79
HincII GTYRAC 1 cut(s) 168
HindII GTYRAC 1 cut(s) 168
HinfI GANTC 1 cut(s) 7
HphI GGTGA 1 cut(s) 227
Hpy166II GTNNAC 1 cut(s) 168
Hpy188I TCNGA 2 cut(s) 28, 132
Hpy188III TCNNGA 1 cut(s) 203
Hpy8I GTNNAC 1 cut(s) 168
HpyAV CCTTC 1 cut(s) 255
HpyCH4III ACNGT 1 cut(s) 114
HpyCH4IV ACGT 1 cut(s) 184
HpyCH4V TGCA 3 cut(s) 67, 79, 268
HpyF10VI GCNNNNNNNGC 1 cut(s) 85
HpySE526I ACGT 1 cut(s) 184
Hsp92II CATG 1 cut(s) 79
LmnI GCTCC 1 cut(s) 132
LpnPI CCDG 7 cut(s) 32, 70, 109, 188, 195, 260, 278
Lsp1109I GCAGC 3 cut(s) 51, 111, 141
LweI GCATC 1 cut(s) 51
MaeII ACGT 1 cut(s) 184
MboII GAAGA 3 cut(s) 16, 206, 230
MnlI CCTC 2 cut(s) 51, 246
MroXI GAANNNNTTC 1 cut(s) 198
MseI TTAA 1 cut(s) 54
MwoI GCNNNNNNNGC 1 cut(s) 85
NlaIII CATG 1 cut(s) 79
NspI RCATGY 1 cut(s) 79
PdmI GAANNNNTTC 1 cut(s) 198
PfeI GAWTC 1 cut(s) 7
PkrI GCNGC 3 cut(s) 66, 126, 156
PspFI CCCAGC 1 cut(s) 209
RsaI GTAC 1 cut(s) 144
RsaNI GTAC 1 cut(s) 143
SaqAI TTAA 1 cut(s) 54
SatI GCNGC 3 cut(s) 65, 125, 155
SetI ASST 5 cut(s) 137, 156, 187, 211, 276
SfaNI GCATC 1 cut(s) 51
SspI AATATT 1 cut(s) 42
TaaI ACNGT 1 cut(s) 114
TaiI ACGT 1 cut(s) 187
TfiI GAWTC 1 cut(s) 7
Tru1I TTAA 1 cut(s) 54
Tru9I TTAA 1 cut(s) 54
TscAI CASTG 1 cut(s) 117
TseI GCWGC 3 cut(s) 64, 124, 154
TspDTI ATGAA 2 cut(s) 17, 230
TspRI CASTG 1 cut(s) 117
XceI RCATGY 1 cut(s) 79
XmnI GAANNNNTTC 1 cut(s) 198
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.