FvH4_2g20540

G3BP-like protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Reverse (-)
17222299 .. 17226583
4285 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g20540.t2

Sequence Viewer

Length: 1350 bp
ATGGCGAGTTCGTATCCTGTACCTGTTAGTGCTGTTCAGGTAGGGTCGTATTTTGTGGGACAGTACTACCAGGTGCTTCAGCAGCAGCCCGATCTTGTTCATCAGTTCTACTCTGATGACAGCACCATGATTCGTGTCGATGGTGATTCCACAGAATCCGCTAATGAAATGCTGCAAATTCATACGCTCATATTGTCACAATACTTCACTTCGATTGAGATCAAGACTATCAACTCCATCAATTCGTTGGGTGGAGGTGTTCTTGTGATGGTCACGGGTTCTGTCAAGTCGAAGGAATTCAATGGTAGGAGGAAGTTTGTCCAGACGTTCTTCCTGGCTCCTCAGAATAAAGGTTACTATGTTCTCAATGATATCTTCCAGTTTCTCGAGGAGGAAGTTGTTTTACAGCATCCGTCATCCATGATATCAGAAGGCCAATTTGATATTCAACTAAATGCTTCTAGCCCTCATCGAGAACCACCAGTTTCTGACTATGTTTTGGAGGAAGAGGCCCGGGAGTATGTGAACTCTGTTGACATAGAAGATGATCCAGTTGATAAGTATAGTCTCCCAGAGCAACAGGTGCAGCACGAATTCGAGACTGAAGTTGTGGTGGAGGAAACTCCTCAAGAGGAGACATATACTTCGTATCAAAATTCTGTGAACAATGTGCAAGACACTCCGGCTGCTTCTGTGGAGGAACCAGTGGGAGAACCTCAGAAGAAAACTTGGGCTTCTATATTGCGAGTCGCTAAGGGACCGTCCGCACCAGAAGTAACTCAACAACCTTCTTTTAGAAGTGTTCAAACTGCTTCAGACTGGAATAGCACCTCTCAGCCCCCTGTTGAACAATCTAACTCTACTTCAGACTGGAGTTACACACCTCAACCCACTGTAGAAGCGGCAGAGGAGAGTTACATGCCAGATGATGAAGGTGAAATGAAATCTGTCTACGTAAGAAACTTACCTCCTACCGTTACCGAAGGAGAAATTGAGGAAGAGTTTAAGCACTTCGGTCAAATTATACCTGATGGTGTCTTTGTTAGGGCTCGCAAGGAAATTGGAGTCTGCTATGCTTTTGTTGAATTCGAAGACATGGTTGGTGTTCACAATGCACTCAAGGCATCTCCAATTCATTTGGCTGGAAGACAAGTGTACATTGAGGAGCGAAGACCAAACAGCGGTGGTGCTGCTCGAGGAAGAGGAAGGGGGAGAGGCAGAGGCAGCTACCCTATTGACGCCACAAGGGGGCGTTTTGGAGGTCGTAGTTCCGGCAGAGGCGGTTACCAGGACAGTGGTGACTACAACAGAGGGAGAGGCAATGGCTTTTATCAGCGTGGCACACGATAA

Protein Analysis

450

Amino Acids

50.15

Weight (kDa)

4.76

Isoelectric Point (pI)

56.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NTF2 PF02136 14 - 128 2e-28 Nuclear transport factor 2 (NTF2) domain
RRM_1 PF00076 317 - 375 8.7e-09 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011872)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 951
AciI CCGC 5 cut(s) 159, 765, 902, 1182, 1281
AclWI GGATC 1 cut(s) 542
AcsI RAATTY 5 cut(s) 177, 296, 593, 655, 1085
AcuI CTGAAG 4 cut(s) 62, 624, 798, 849
AcyI GRCGYC 1 cut(s) 1239
AfaI GTAC 3 cut(s) 21, 65, 1157
AfiI CCNNNNNNNGG 2 cut(s) 1181, 1248
AgsI TTSAA 5 cut(s) 301, 449, 806, 848, 1085
AjnI CCWGG 3 cut(s) 69, 333, 1287
AjuI GAANNNNNNNTTGG 4 cut(s) 429, 461, 1083, 1115
AluBI AGCT 1 cut(s) 1227
AluI AGCT 1 cut(s) 1227
Alw26I GTCTC 3 cut(s) 572, 593, 629
AlwI GGATC 1 cut(s) 542
AlwNI CAGNNNCTG 1 cut(s) 488
Ama87I CYCGRG 3 cut(s) 386, 513, 1194
AoxI GGCC 2 cut(s) 433, 510
ApeKI GCWGC 7 cut(s) 82, 85, 172, 586, 686, 1190, 1224
ApoI RAATTY 5 cut(s) 177, 296, 593, 655, 1085
ArsI GACNNNNNNTTYG 2 cut(s) 628, 660
Asp700I GAANNNNTTC 1 cut(s) 296
AspS9I GGNCC 2 cut(s) 511, 758
AsuC2I CCSGG 2 cut(s) 514, 515
AsuHPI GGTGA 3 cut(s) 155, 947, 1310
AsuII TTCGAA 1 cut(s) 1089
AvaI CYCGRG 3 cut(s) 386, 513, 1194
AvaII GGWCC 1 cut(s) 758
BanII GRGCYC 1 cut(s) 1051
BarI GAAGNNNNNNTAC 2 cut(s) 387, 419
BbsI GAAGAC 3 cut(s) 1098, 1153, 1177
BbvI GCAGC 7 cut(s) 94, 97, 159, 598, 673, 1177, 1236
BccI CCATC 4 cut(s) 134, 245, 262, 1025
BciT130I CCWGG 3 cut(s) 71, 335, 1289
BciVI GTATCC 1 cut(s) 24
BcnI CCSGG 2 cut(s) 514, 515
BcoDI GTCTC 3 cut(s) 572, 593, 629
BfaI CTAG 1 cut(s) 462
BfmI CTRYAG 1 cut(s) 894
BfuI GTATCC 1 cut(s) 24
BisI GCNGC 8 cut(s) 83, 86, 173, 587, 687, 903, 1191, 1225
BlsI GCNGC 8 cut(s) 84, 87, 174, 588, 688, 904, 1192, 1226
BmcAI AGTACT 1 cut(s) 65
Bme1390I CCNGG 5 cut(s) 71, 335, 514, 515, 1289
Bme18I GGWCC 1 cut(s) 758
BmeT110I CYCGRG 3 cut(s) 386, 513, 1194
BmgT120I GGNCC 2 cut(s) 511, 758
BmiI GGNNCC 3 cut(s) 339, 702, 759
BmrFI CCNGG 5 cut(s) 71, 335, 514, 515, 1289
BmsI GCATC 2 cut(s) 418, 1133
BpiI GAAGAC 3 cut(s) 1098, 1153, 1177
BpmI CTGGAG 1 cut(s) 892
Bpu10I CCTNAGC 1 cut(s) 753
Bpu14I TTCGAA 1 cut(s) 1089
BpuEI CTTGAG 2 cut(s) 612, 1103
BpuMI CCSGG 2 cut(s) 514, 515
BsaAI YACGTR 1 cut(s) 955
BsaBI GATNNNNATC 1 cut(s) 218
BsaHI GRCGYC 1 cut(s) 1239
BsaJI CCNNGG 1 cut(s) 513
Bsc4I CCNNNNNNNGG 2 cut(s) 1181, 1248
Bse1I ACTGG 6 cut(s) 379, 482, 551, 704, 824, 875
Bse3DI GCAATG 1 cut(s) 1327
Bse8I GATNNNNATC 1 cut(s) 218
BseBI CCWGG 3 cut(s) 71, 335, 1289
BseDI CCNNGG 1 cut(s) 513
BseGI GGATG 2 cut(s) 409, 416
BseJI GATNNNNATC 1 cut(s) 218
BseLI CCNNNNNNNGG 2 cut(s) 1181, 1248
BseMI GCAATG 1 cut(s) 1327
BseMII CTCAG 3 cut(s) 356, 731, 848
BseNI ACTGG 6 cut(s) 379, 482, 551, 704, 824, 875
BseRI GAGGAG 6 cut(s) 330, 404, 615, 647, 923, 1178
BseXI GCAGC 7 cut(s) 94, 97, 159, 598, 673, 1177, 1236
BsgI GTGCAG 1 cut(s) 605
BshFI GGCC 2 cut(s) 435, 512
BsiHKCI CYCGRG 3 cut(s) 386, 513, 1194
BsiSI CCGG 3 cut(s) 514, 683, 1272
BslFI GGGAC 2 cut(s) 72, 771
BslI CCNNNNNNNGG 2 cut(s) 1181, 1248
BsmAI GTCTC 3 cut(s) 572, 593, 629
BsmFI GGGAC 2 cut(s) 72, 771
BsnI GGCC 2 cut(s) 435, 512
BsoBI CYCGRG 3 cut(s) 386, 513, 1194
Bsp119I TTCGAA 1 cut(s) 1089
Bsp1286I GDGCHC 1 cut(s) 1051
Bsp1407I TGTACA 1 cut(s) 1155
Bsp143I GATC 3 cut(s) 91, 219, 547
BspACI CCGC 5 cut(s) 159, 765, 902, 1182, 1281
BspANI GGCC 2 cut(s) 435, 512
BspCNI CTCAG 3 cut(s) 355, 730, 847
BspLI GGNNCC 3 cut(s) 339, 702, 759
BspPI GGATC 1 cut(s) 542
BspT104I TTCGAA 1 cut(s) 1089
BsrDI GCAATG 1 cut(s) 1327
BsrGI TGTACA 1 cut(s) 1155
BsrI ACTGG 6 cut(s) 379, 482, 551, 704, 824, 875
BssECI CCNNGG 1 cut(s) 513
BssMI GATC 3 cut(s) 91, 219, 547
BssNI GRCGYC 1 cut(s) 1239
Bst2UI CCWGG 3 cut(s) 71, 335, 1289
Bst4CI ACNGT 5 cut(s) 63, 762, 895, 976, 1295
Bst6I CTCTTC 3 cut(s) 501, 993, 1195
BstACI GRCGYC 1 cut(s) 1239
BstAPI GCANNNNNTGC 1 cut(s) 583
BstAUI TGTACA 1 cut(s) 1155
BstBAI YACGTR 1 cut(s) 955
BstBI TTCGAA 1 cut(s) 1089
BstC8I GCNNGC 1 cut(s) 1051
BstDEI CTNAG 4 cut(s) 342, 717, 753, 834
BstEII GGTNACC 1 cut(s) 1283
BstF5I GGATG 2 cut(s) 409, 416
BstKTI GATC 3 cut(s) 94, 222, 550
BstMAI GTCTC 3 cut(s) 572, 593, 629
BstMBI GATC 3 cut(s) 91, 219, 547
BstMWI GCNNNNNNNGC 4 cut(s) 82, 583, 1121, 1224
BstNI CCWGG 3 cut(s) 71, 335, 1289
BstNSI RCATGY 1 cut(s) 922
BstPI GGTNACC 1 cut(s) 1283
BstSCI CCNGG 5 cut(s) 69, 333, 512, 513, 1287
BstSFI CTRYAG 1 cut(s) 894
BstSNI TACGTA 1 cut(s) 955
BstV1I GCAGC 7 cut(s) 94, 97, 159, 598, 673, 1177, 1236
BstV2I GAAGAC 3 cut(s) 1098, 1153, 1177
BstXI CCANNNNNNTGG 1 cut(s) 1295
BsuI GTATCC 1 cut(s) 24
BsuRI GGCC 2 cut(s) 435, 512
BtsCI GGATG 2 cut(s) 409, 416
BtsIMutI CAGTG 3 cut(s) 711, 891, 1300
Cac8I GCNNGC 1 cut(s) 1051
CaiI CAGNNNCTG 1 cut(s) 488
Cfr13I GGNCC 2 cut(s) 511, 758
Cfr9I CCCGGG 1 cut(s) 513
CseI GACGC 1 cut(s) 1247
CsiI ACCWGGT 1 cut(s) 69
Csp6I GTAC 3 cut(s) 20, 64, 1156
CviAII CATG 4 cut(s) 127, 421, 919, 1096
CviQI GTAC 3 cut(s) 20, 64, 1156
DdeI CTNAG 4 cut(s) 342, 717, 753, 834
DpnI GATC 3 cut(s) 93, 221, 549
DpnII GATC 3 cut(s) 91, 219, 547
Eam1104I CTCTTC 3 cut(s) 501, 993, 1195
EarI CTCTTC 3 cut(s) 501, 993, 1195
Eco105I TACGTA 1 cut(s) 955
Eco24I GRGCYC 1 cut(s) 1051
Eco32I GATATC 2 cut(s) 373, 426
Eco47I GGWCC 1 cut(s) 758
Eco57I CTGAAG 4 cut(s) 62, 624, 798, 849
Eco88I CYCGRG 3 cut(s) 386, 513, 1194
Eco91I GGTNACC 1 cut(s) 1283
EcoO65I GGTNACC 1 cut(s) 1283
EcoRI GAATTC 3 cut(s) 296, 593, 1085
EcoRII CCWGG 3 cut(s) 69, 333, 1287
EcoRV GATATC 2 cut(s) 373, 426
EcoT38I GRGCYC 1 cut(s) 1051
FaeI CATG 4 cut(s) 130, 424, 922, 1099
FaqI GGGAC 2 cut(s) 72, 771
FatI CATG 4 cut(s) 126, 420, 918, 1095
FblI GTMKAC 1 cut(s) 951
Fnu4HI GCNGC 8 cut(s) 83, 86, 173, 587, 687, 903, 1191, 1225
FokI GGATG 2 cut(s) 396, 403
FriOI GRGCYC 1 cut(s) 1051
Fsp4HI GCNGC 8 cut(s) 83, 86, 173, 587, 687, 903, 1191, 1225
FspBI CTAG 1 cut(s) 462
GluI GCNGC 8 cut(s) 83, 86, 173, 587, 687, 903, 1191, 1225
GsuI CTGGAG 1 cut(s) 892
HaeIII GGCC 2 cut(s) 435, 512
HapII CCGG 3 cut(s) 514, 683, 1272
HgaI GACGC 1 cut(s) 1247
Hin1I GRCGYC 1 cut(s) 1239
Hin1II CATG 4 cut(s) 130, 424, 922, 1099
HincII GTYRAC 1 cut(s) 535
HindII GTYRAC 1 cut(s) 535
HinfI GANTC 5 cut(s) 130, 146, 155, 747, 1065
HpaII CCGG 3 cut(s) 514, 683, 1272
HphI GGTGA 3 cut(s) 155, 947, 1310
Hpy166II GTNNAC 6 cut(s) 526, 535, 664, 952, 1108, 1156
Hpy188I TCNGA 7 cut(s) 115, 345, 430, 490, 720, 817, 868
Hpy188III TCNNGA 6 cut(s) 223, 322, 386, 473, 598, 629
Hpy8I GTNNAC 6 cut(s) 526, 535, 664, 952, 1108, 1156
HpyAV CCTTC 6 cut(s) 286, 425, 798, 926, 977, 1200
HpyCH4III ACNGT 5 cut(s) 63, 762, 895, 976, 1295
HpyCH4IV ACGT 2 cut(s) 326, 954
HpyCH4V TGCA 4 cut(s) 175, 586, 673, 1115
HpyF10VI GCNNNNNNNGC 4 cut(s) 82, 583, 1121, 1224
HpyF3I CTNAG 4 cut(s) 342, 717, 753, 834
HpySE526I ACGT 2 cut(s) 326, 954
Hsp92I GRCGYC 1 cut(s) 1239
Hsp92II CATG 4 cut(s) 130, 424, 922, 1099
Kzo9I GATC 3 cut(s) 91, 219, 547
LmnI GCTCC 2 cut(s) 343, 1165
Lsp1109I GCAGC 7 cut(s) 94, 97, 159, 598, 673, 1177, 1236
LweI GCATC 2 cut(s) 418, 1133
MabI ACCWGGT 1 cut(s) 69
MaeI CTAG 1 cut(s) 462
MaeII ACGT 2 cut(s) 326, 954
MaeIII GTNAC 9 cut(s) 195, 271, 353, 775, 875, 914, 976, 1283, 1298
MalI GATC 3 cut(s) 93, 221, 549
MboI GATC 3 cut(s) 91, 219, 547
MhlI GDGCHC 1 cut(s) 1051
MlyI GAGTC 2 cut(s) 756, 1074
MroXI GAANNNNTTC 1 cut(s) 296
MseI TTAA 1 cut(s) 1005
MspA1I CMGCKG 1 cut(s) 1182
MspI CCGG 3 cut(s) 514, 683, 1272
MspR9I CCNGG 5 cut(s) 71, 335, 514, 515, 1289
MvaI CCWGG 3 cut(s) 71, 335, 1289
MwoI GCNNNNNNNGC 4 cut(s) 82, 583, 1121, 1224
NciI CCSGG 2 cut(s) 514, 515
NdeII GATC 3 cut(s) 91, 219, 547
NlaIII CATG 4 cut(s) 130, 424, 922, 1099
NlaIV GGNNCC 3 cut(s) 339, 702, 759
NmuCI GTSAC 3 cut(s) 195, 271, 1298
NspI RCATGY 1 cut(s) 922
NspV TTCGAA 1 cut(s) 1089
PaeR7I CTCGAG 2 cut(s) 386, 1194
PdmI GAANNNNTTC 1 cut(s) 296
PfeI GAWTC 3 cut(s) 130, 146, 155
PkrI GCNGC 8 cut(s) 84, 87, 174, 588, 688, 904, 1192, 1226
PleI GAGTC 2 cut(s) 755, 1073
PpsI GAGTC 2 cut(s) 755, 1073
Ppu21I YACGTR 1 cut(s) 955
Psp6I CCWGG 3 cut(s) 69, 333, 1287
PspEI GGTNACC 1 cut(s) 1283
PspGI CCWGG 3 cut(s) 69, 333, 1287
PspN4I GGNNCC 3 cut(s) 339, 702, 759
PspPI GGNCC 2 cut(s) 511, 758
PspXI VCTCGAGB 1 cut(s) 1194
PstNI CAGNNNCTG 1 cut(s) 488
RsaI GTAC 3 cut(s) 21, 65, 1157
RsaNI GTAC 3 cut(s) 20, 64, 1156
SaqAI TTAA 1 cut(s) 1005
SatI GCNGC 8 cut(s) 83, 86, 173, 587, 687, 903, 1191, 1225
Sau3AI GATC 3 cut(s) 91, 219, 547
Sau96I GGNCC 2 cut(s) 511, 758
ScaI AGTACT 1 cut(s) 65
SchI GAGTC 2 cut(s) 756, 1074
ScrFI CCNGG 5 cut(s) 71, 335, 514, 515, 1289
SduI GDGCHC 1 cut(s) 1051
SexAI ACCWGGT 1 cut(s) 69
SfaNI GCATC 2 cut(s) 418, 1133
SfcI CTRYAG 1 cut(s) 894
Sfr274I CTCGAG 2 cut(s) 386, 1194
SfuI TTCGAA 1 cut(s) 1089
SinI GGWCC 1 cut(s) 758
SlaI CTCGAG 2 cut(s) 386, 1194
SmaI CCCGGG 1 cut(s) 515
SmlI CTYRAG 4 cut(s) 386, 627, 1118, 1194
SmoI CTYRAG 4 cut(s) 386, 627, 1118, 1194
SnaBI TACGTA 1 cut(s) 955
SsiI CCGC 5 cut(s) 159, 765, 902, 1182, 1281
SspMI CTAG 1 cut(s) 462
StyD4I CCNGG 5 cut(s) 69, 333, 512, 513, 1287
TaaI ACNGT 5 cut(s) 63, 762, 895, 976, 1295
TaiI ACGT 2 cut(s) 329, 957
TaqI TCGA 8 cut(s) 138, 212, 290, 387, 472, 597, 1089, 1195
TaqII GACCGA 1 cut(s) 1004
TatI WGTACW 2 cut(s) 63, 1155
TauI GCSGC 1 cut(s) 905
TfiI GAWTC 3 cut(s) 130, 146, 155
Tru1I TTAA 1 cut(s) 1005
Tru9I TTAA 1 cut(s) 1005
TscAI CASTG 3 cut(s) 711, 898, 1300
TseFI GTSAC 3 cut(s) 195, 271, 1298
TseI GCWGC 7 cut(s) 82, 85, 172, 586, 686, 1190, 1224
Tsp45I GTSAC 3 cut(s) 195, 271, 1298
TspDTI ATGAA 6 cut(s) 89, 170, 180, 945, 956, 1124
TspGWI ACGGA 1 cut(s) 402
TspMI CCCGGG 1 cut(s) 513
TspRI CASTG 3 cut(s) 711, 898, 1300
VpaK11BI GGWCC 1 cut(s) 758
XapI RAATTY 5 cut(s) 177, 296, 593, 655, 1085
XceI RCATGY 1 cut(s) 922
XcmI CCANNNNNNNNNTGG 1 cut(s) 244
XhoI CTCGAG 2 cut(s) 386, 1194
XmaI CCCGGG 1 cut(s) 513
XmiI GTMKAC 1 cut(s) 951
XmnI GAANNNNTTC 1 cut(s) 296
XspI CTAG 1 cut(s) 462
ZrmI AGTACT 1 cut(s) 65
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.