Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0011872

Physical Location & Seq

Genomic Coordinates Forward (+)

21119268 .. 21123216

Gene Structure 3949 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00182100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1248 bp

ATGGCGAGTTCGTATCCTGGACCTGTTAGTGCTGTTCAGGTAGGGTCGTACTTTGTGGGACAGTACTACCAGGTTCTTCAGCAGCAACCCGATCTTGTTCATCAGTTTTATTCTGATGGCAGCACCATGATTCGTGTCGATGGCGATTCGACAGAATCTGCTAATGAAATGCTGCAAATTCATACGCTCATATTGTCGCAGTATTTTACTTCGATTGAGATCAAGACTATCAATTCCATCAATTCCTTGGGTGGAGGTGTTCTTGTGATGGTTACCGGTTCTGTTAAGTCGAAGGAATTCAATGGGAGGAGGAAGTTTGTCCAGACCTTCTTTCTGGCTCCTCAGAATAAAGGATACTATGTTCTCAATGATATCTTCCAGTTTCTCGAGGATGAGGTTGTTTTACAACATCCTTCAAACATGATATCGGAGGGTCAATTCGATATTCAATTAAATGCTTCTAGCCCTCATCGAGAACCGCCAGTTTCCGACTATGTTCTGGAGGAAGAGGCCAGGGAGTATGTGAACTCTGTCGACATAGAAGACGATCCAGTTGATAAGTATAGTCTGCCAGAGCAACAGGTACAGCAAGAATTTGAGACTGAAGTGGTGGTGGAGGAAACTCCTCAAGAGGAGACCTATGCCTCATTTCAAAGTGCGGTGAACACTGTGCAAGACACTCCTGTTGCTTCTGTGGAGGAACCAGTGGGAGAACCTCAGAAGAAGACTTGGGCTTCTATATTGCGAGTTGCTAAGGGTCCGTCAGCACCAGAAGTAACTCAACAACCCTCTTCTAGAAGTGTTCAAACTGCTCCAGATTGGAATCACATCCCTCAGCCCCCTGTTGAACAATCAAACTCTGCTTCAGACTGGAGTTACACACCTCAGCCCACTGTAGAAGCAGCAGAGGAGAGTTACATGCCAGAGGAAGAAGTTACTGAAGGTGAAATCGAGGAAGAGTTTAAGCACTTTGGTCAAATAATACCTGATGGCGTCTTTGTTAGGGCTCGCAAGGAAATTGGAGTCTGCTATGCTTTTGTTGAATTTGAAGACATGGCTGGTGTTCACAATGCCCTCAAGGAGGAAGGGGCAGAGGCAGAAGCAGTTACCCAATTGACGCCACAAGGGGGCGTTTTGGAGGTCGTAGTTCGGGCAGAGGTAGTTACCAGGATAGTGGCGACTACAATAGAGGGAGAGGGAATGGCTTTTATCAGCGTGGTACACGATAAGTGGTTTTGGAAGTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006508 GO:0006807 GO:0006914 GO:0008150 GO:0008152 GO:0009056 GO:0009987 GO:0010494 GO:0016236 GO:0016579 GO:0019538 GO:0032386 GO:0032879 GO:0032991 GO:0034517 GO:0035770 GO:0035973 GO:0036211 GO:0036464 GO:0043021 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043412 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0044877 GO:0050789 GO:0050794 GO:0051049 GO:0060341 GO:0060627 GO:0060628 GO:0061912 GO:0061919 GO:0065007 GO:0070646 GO:0070647 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1905538 GO:1990861 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NTF2 RRM_1

Protein Analysis

415

Amino Acids

46.33

Weight (kDa)

4.34

Isoelectric Point (pI)

58.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NTF2	PF02136	14 - 128	7.4e-28	Nuclear transport factor 2 (NTF2) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011872)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43960 AT5G43960
fragaria_vesca	FvH4_2g20540 FvH4_2g20540
malus_domestica	MD05G1189200.v1.1
prunus_persica	Prupe.8G215800_v2.0.a1
pyrus_communis	pycom05g17380 pycom10g11630 pycom10g15260
rosa_chinensis	RchiOBHm_Chr6g0286701
rosa_laevigata	RLG00000012551
rosa_multiflora	Rmu_sc0000560.1_g000014 Rmu_sc0007546.1_g000003
rosa_roxburghii	Rroxscaffold_7G00182100
rosa_rugosa	Rorug06G0182000
rosa_samantha	Rh6CG298500 Rh6DG290500 Rh6DG447300
rosa_wichuraiana	Rw6G025360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	534
AciI	CCGC	2 cut(s)	479, 659
AclWI	GGATC	1 cut(s)	542
AcsI	RAATTY	4 cut(s)	177, 296, 593, 1043
AcuI	CTGAAG	4 cut(s)	62, 624, 849, 960
AcyI	GRCGYC	2 cut(s)	993, 1118
AfaI	GTAC	4 cut(s)	50, 65, 585, 1221
AfiI	CCNNNNNNNGG	2 cut(s)	1081, 1127
AgeI	ACCGGT	1 cut(s)	275
AgsI	TTSAA	8 cut(s)	301, 417, 449, 653, 806, 848, 1043, 1049
AjnI	CCWGG	4 cut(s)	16, 69, 512, 1166
AloI	GAACNNNNNNTCC	2 cut(s)	345, 377
Alw26I	GTCTC	2 cut(s)	593, 629
AlwI	GGATC	1 cut(s)	542
AlwNI	CAGNNNCTG	1 cut(s)	158
Ama87I	CYCGRG	1 cut(s)	386
AoxI	GGCC	1 cut(s)	510
ApeKI	GCWGC	4 cut(s)	82, 120, 172, 902
ApoI	RAATTY	4 cut(s)	177, 296, 593, 1043
AsiGI	ACCGGT	1 cut(s)	275
Asp700I	GAANNNNTTC	1 cut(s)	296
AspS9I	GGNCC	2 cut(s)	20, 758
AsuHPI	GGTGA	2 cut(s)	673, 956
AvaI	CYCGRG	1 cut(s)	386
AvaII	GGWCC	2 cut(s)	20, 758
BanII	GRGCYC	1 cut(s)	1009
BbsI	GAAGAC	3 cut(s)	549, 731, 1056
BbvCI	CCTCAGC	2 cut(s)	834, 885
BbvI	GCAGC	4 cut(s)	94, 132, 159, 914
BccI	CCATC	5 cut(s)	110, 134, 245, 262, 983
BciT130I	CCWGG	4 cut(s)	18, 71, 514, 1168
BciVI	GTATCC	2 cut(s)	24, 347
BcoDI	GTCTC	2 cut(s)	593, 629
BfaI	CTAG	2 cut(s)	462, 795
BfmI	CTRYAG	1 cut(s)	894
BfuI	GTATCC	2 cut(s)	24, 347
BisI	GCNGC	4 cut(s)	83, 121, 173, 903
BlsI	GCNGC	4 cut(s)	84, 122, 174, 904
BmcAI	AGTACT	1 cut(s)	65
Bme1390I	CCNGG	4 cut(s)	18, 71, 514, 1168
Bme18I	GGWCC	2 cut(s)	20, 758
BmeT110I	CYCGRG	1 cut(s)	386
BmgT120I	GGNCC	2 cut(s)	20, 758
BmiI	GGNNCC	3 cut(s)	339, 702, 759
BmrFI	CCNGG	4 cut(s)	18, 71, 514, 1168
BpiI	GAAGAC	3 cut(s)	549, 731, 1056
BpmI	CTGGAG	3 cut(s)	521, 798, 892
Bpu10I	CCTNAGC	3 cut(s)	753, 834, 885
BpuEI	CTTGAG	2 cut(s)	612, 1061
BsaBI	GATNNNNATC	2 cut(s)	218, 822
BsaHI	GRCGYC	2 cut(s)	993, 1118
BsaI	GGTCTC	1 cut(s)	629
BsaJI	CCNNGG	2 cut(s)	246, 513
BsaWI	WCCGGW	1 cut(s)	275
Bsc4I	CCNNNNNNNGG	2 cut(s)	1081, 1127
Bse118I	RCCGGY	1 cut(s)	275
Bse1I	ACTGG	5 cut(s)	379, 482, 551, 704, 875
Bse8I	GATNNNNATC	2 cut(s)	218, 822
BseBI	CCWGG	4 cut(s)	18, 71, 514, 1168
BseDI	CCNNGG	2 cut(s)	246, 513
BseGI	GGATG	3 cut(s)	397, 409, 828
BseJI	GATNNNNATC	2 cut(s)	218, 822
BseLI	CCNNNNNNNGG	2 cut(s)	1081, 1127
BseMII	CTCAG	4 cut(s)	356, 731, 848, 899
BseNI	ACTGG	5 cut(s)	379, 482, 551, 704, 875
BseRI	GAGGAG	5 cut(s)	322, 330, 615, 647, 923
BseXI	GCAGC	4 cut(s)	94, 132, 159, 914
BshFI	GGCC	1 cut(s)	512
BshTI	ACCGGT	1 cut(s)	275
BsiHKCI	CYCGRG	1 cut(s)	386
BsiSI	CCGG	1 cut(s)	276
BslFI	GGGAC	1 cut(s)	72
BslI	CCNNNNNNNGG	2 cut(s)	1081, 1127
BsmAI	GTCTC	2 cut(s)	593, 629
BsmFI	GGGAC	1 cut(s)	72
BsnI	GGCC	1 cut(s)	512
Bso31I	GGTCTC	1 cut(s)	629
BsoBI	CYCGRG	1 cut(s)	386
Bsp1286I	GDGCHC	1 cut(s)	1009
Bsp143I	GATC	3 cut(s)	91, 219, 547
BspACI	CCGC	2 cut(s)	479, 659
BspANI	GGCC	1 cut(s)	512
BspCNI	CTCAG	4 cut(s)	355, 730, 847, 898
BspLI	GGNNCC	3 cut(s)	339, 702, 759
BspPI	GGATC	1 cut(s)	542
BspTNI	GGTCTC	1 cut(s)	629
BsrFI	RCCGGY	1 cut(s)	275
BsrI	ACTGG	5 cut(s)	379, 482, 551, 704, 875
BssAI	RCCGGY	1 cut(s)	275
BssECI	CCNNGG	2 cut(s)	246, 513
BssMI	GATC	3 cut(s)	91, 219, 547
BssNI	GRCGYC	2 cut(s)	993, 1118
BssT1I	CCWWGG	1 cut(s)	246
Bst2UI	CCWGG	4 cut(s)	18, 71, 514, 1168
Bst4CI	ACNGT	3 cut(s)	63, 670, 895
Bst6I	CTCTTC	3 cut(s)	501, 796, 951
BstACI	GRCGYC	2 cut(s)	993, 1118
BstC8I	GCNNGC	1 cut(s)	1009
BstDEI	CTNAG	5 cut(s)	342, 717, 753, 834, 885
BstEII	GGTNACC	1 cut(s)	271
BstENI	CCTNNNNNAGG	1 cut(s)	1079
BstF5I	GGATG	3 cut(s)	397, 409, 828
BstKTI	GATC	3 cut(s)	94, 222, 550
BstMAI	GTCTC	2 cut(s)	593, 629
BstMBI	GATC	3 cut(s)	91, 219, 547
BstNI	CCWGG	4 cut(s)	18, 71, 514, 1168
BstNSI	RCATGY	1 cut(s)	922
BstPI	GGTNACC	1 cut(s)	271
BstSCI	CCNGG	4 cut(s)	16, 69, 512, 1166
BstSFI	CTRYAG	1 cut(s)	894
BstV1I	GCAGC	4 cut(s)	94, 132, 159, 914
BstV2I	GAAGAC	3 cut(s)	549, 731, 1056
BstXI	CCANNNNNNTGG	1 cut(s)	1174
BsuI	GTATCC	2 cut(s)	24, 347
BsuRI	GGCC	1 cut(s)	512
BtsCI	GGATG	3 cut(s)	397, 409, 828
BtsIMutI	CAGTG	3 cut(s)	666, 711, 891
Cac8I	GCNNGC	1 cut(s)	1009
CaiI	CAGNNNCTG	1 cut(s)	158
Cfr10I	RCCGGY	1 cut(s)	275
Cfr13I	GGNCC	2 cut(s)	20, 758
CseI	GACGC	2 cut(s)	982, 1126
CsiI	ACCWGGT	1 cut(s)	69
Csp6I	GTAC	4 cut(s)	49, 64, 584, 1220
CspAI	ACCGGT	1 cut(s)	275
CviAII	CATG	4 cut(s)	127, 421, 919, 1054
CviJI	RGCY	9 cut(s)	338, 465, 512, 734, 838, 889, 1007, 1058, 1205
CviKI_1	RGCY	9 cut(s)	338, 465, 512, 734, 838, 889, 1007, 1058, 1205
CviQI	GTAC	4 cut(s)	49, 64, 584, 1220
DdeI	CTNAG	5 cut(s)	342, 717, 753, 834, 885
DpnI	GATC	3 cut(s)	93, 221, 549
DpnII	GATC	3 cut(s)	91, 219, 547
Eam1104I	CTCTTC	3 cut(s)	501, 796, 951
EarI	CTCTTC	3 cut(s)	501, 796, 951
Eco130I	CCWWGG	1 cut(s)	246
Eco24I	GRGCYC	1 cut(s)	1009
Eco31I	GGTCTC	1 cut(s)	629
Eco32I	GATATC	2 cut(s)	373, 426
Eco47I	GGWCC	2 cut(s)	20, 758
Eco57I	CTGAAG	4 cut(s)	62, 624, 849, 960
Eco88I	CYCGRG	1 cut(s)	386
Eco91I	GGTNACC	1 cut(s)	271
EcoNI	CCTNNNNNAGG	1 cut(s)	1079
EcoO65I	GGTNACC	1 cut(s)	271
EcoRI	GAATTC	1 cut(s)	296
EcoRII	CCWGG	4 cut(s)	16, 69, 512, 1166
EcoRV	GATATC	2 cut(s)	373, 426
EcoT14I	CCWWGG	1 cut(s)	246
EcoT38I	GRGCYC	1 cut(s)	1009
ErhI	CCWWGG	1 cut(s)	246
FaeI	CATG	4 cut(s)	130, 424, 922, 1057
FaqI	GGGAC	1 cut(s)	72
FatI	CATG	4 cut(s)	126, 420, 918, 1053
FblI	GTMKAC	1 cut(s)	534
Fnu4HI	GCNGC	4 cut(s)	83, 121, 173, 903
FokI	GGATG	3 cut(s)	396, 404, 815
FriOI	GRGCYC	1 cut(s)	1009
Fsp4HI	GCNGC	4 cut(s)	83, 121, 173, 903
FspBI	CTAG	2 cut(s)	462, 795
GluI	GCNGC	4 cut(s)	83, 121, 173, 903
GsuI	CTGGAG	3 cut(s)	521, 798, 892
HaeIII	GGCC	1 cut(s)	512
HapII	CCGG	1 cut(s)	276
HgaI	GACGC	2 cut(s)	982, 1126
Hin1I	GRCGYC	2 cut(s)	993, 1118
Hin1II	CATG	4 cut(s)	130, 424, 922, 1057
HincII	GTYRAC	1 cut(s)	535
HindII	GTYRAC	1 cut(s)	535
HinfI	GANTC	5 cut(s)	130, 146, 155, 823, 1023
HpaII	CCGG	1 cut(s)	276
HphI	GGTGA	2 cut(s)	673, 956
Hpy166II	GTNNAC	5 cut(s)	526, 535, 664, 1066, 1222
Hpy188I	TCNGA	7 cut(s)	115, 345, 430, 490, 720, 868, 1247
Hpy188III	TCNNGA	8 cut(s)	223, 322, 386, 473, 500, 629, 795, 815
Hpy8I	GTNNAC	5 cut(s)	526, 535, 664, 1066, 1222
HpyAV	CCTTC	5 cut(s)	286, 337, 423, 935, 1079
HpyCH4III	ACNGT	3 cut(s)	63, 670, 895
HpyCH4V	TGCA	2 cut(s)	175, 673
HpyF3I	CTNAG	5 cut(s)	342, 717, 753, 834, 885
Hsp92I	GRCGYC	2 cut(s)	993, 1118
Hsp92II	CATG	4 cut(s)	130, 424, 922, 1057
Kzo9I	GATC	3 cut(s)	91, 219, 547
LmnI	GCTCC	2 cut(s)	343, 817
Lsp1109I	GCAGC	4 cut(s)	94, 132, 159, 914
MabI	ACCWGGT	1 cut(s)	69
MaeI	CTAG	2 cut(s)	462, 795
MaeIII	GTNAC	7 cut(s)	271, 775, 875, 914, 934, 1105, 1162
MalI	GATC	3 cut(s)	93, 221, 549
MboI	GATC	3 cut(s)	91, 219, 547
MfeI	CAATTG	1 cut(s)	1112
MhlI	GDGCHC	1 cut(s)	1009
MlyI	GAGTC	1 cut(s)	1032
MmeI	TCCRAC	1 cut(s)	513
MroXI	GAANNNNTTC	1 cut(s)	296
MseI	TTAA	3 cut(s)	285, 452, 963
MspI	CCGG	1 cut(s)	276
MspR9I	CCNGG	4 cut(s)	18, 71, 514, 1168
MunI	CAATTG	1 cut(s)	1112
MvaI	CCWGG	4 cut(s)	18, 71, 514, 1168
NdeII	GATC	3 cut(s)	91, 219, 547
NlaIII	CATG	4 cut(s)	130, 424, 922, 1057
NlaIV	GGNNCC	3 cut(s)	339, 702, 759
NspI	RCATGY	1 cut(s)	922
PaeR7I	CTCGAG	1 cut(s)	386
PdmI	GAANNNNTTC	1 cut(s)	296
PfeI	GAWTC	4 cut(s)	130, 146, 155, 823
PfoI	TCCNGGA	1 cut(s)	16
PinAI	ACCGGT	1 cut(s)	275
PkrI	GCNGC	4 cut(s)	84, 122, 174, 904
PleI	GAGTC	1 cut(s)	1031
PpsI	GAGTC	1 cut(s)	1031
Psp6I	CCWGG	4 cut(s)	16, 69, 512, 1166
PspEI	GGTNACC	1 cut(s)	271
PspGI	CCWGG	4 cut(s)	16, 69, 512, 1166
PspN4I	GGNNCC	3 cut(s)	339, 702, 759
PspPI	GGNCC	2 cut(s)	20, 758
PstNI	CAGNNNCTG	1 cut(s)	158
RsaI	GTAC	4 cut(s)	50, 65, 585, 1221
RsaNI	GTAC	4 cut(s)	49, 64, 584, 1220
SalI	GTCGAC	1 cut(s)	533
SaqAI	TTAA	3 cut(s)	285, 452, 963
SatI	GCNGC	4 cut(s)	83, 121, 173, 903
Sau3AI	GATC	3 cut(s)	91, 219, 547
Sau96I	GGNCC	2 cut(s)	20, 758
ScaI	AGTACT	1 cut(s)	65
SchI	GAGTC	1 cut(s)	1032
ScrFI	CCNGG	4 cut(s)	18, 71, 514, 1168
SduI	GDGCHC	1 cut(s)	1009
SexAI	ACCWGGT	1 cut(s)	69
SfcI	CTRYAG	1 cut(s)	894
Sfr274I	CTCGAG	1 cut(s)	386
SinI	GGWCC	2 cut(s)	20, 758
SlaI	CTCGAG	1 cut(s)	386
SmlI	CTYRAG	3 cut(s)	386, 627, 1076
SmoI	CTYRAG	3 cut(s)	386, 627, 1076
SsiI	CCGC	2 cut(s)	479, 659
SspMI	CTAG	2 cut(s)	462, 795
StyD4I	CCNGG	4 cut(s)	16, 69, 512, 1166
StyI	CCWWGG	1 cut(s)	246
TaaI	ACNGT	3 cut(s)	63, 670, 895
TaqI	TCGA	9 cut(s)	138, 149, 212, 290, 387, 441, 472, 534, 951
TatI	WGTACW	1 cut(s)	63
TfiI	GAWTC	4 cut(s)	130, 146, 155, 823
Tru1I	TTAA	3 cut(s)	285, 452, 963
Tru9I	TTAA	3 cut(s)	285, 452, 963
TscAI	CASTG	3 cut(s)	673, 711, 898
TseI	GCWGC	4 cut(s)	82, 120, 172, 902
TspDTI	ATGAA	3 cut(s)	89, 170, 180
TspGWI	ACGGA	1 cut(s)	750
TspRI	CASTG	3 cut(s)	673, 711, 898
VpaK11BI	GGWCC	2 cut(s)	20, 758
XagI	CCTNNNNNAGG	1 cut(s)	1079
XapI	RAATTY	4 cut(s)	177, 296, 593, 1043
XbaI	TCTAGA	1 cut(s)	794
XceI	RCATGY	1 cut(s)	922
XcmI	CCANNNNNNNNNTGG	1 cut(s)	244
XhoI	CTCGAG	1 cut(s)	386
XmiI	GTMKAC	1 cut(s)	534
XmnI	GAANNNNTTC	1 cut(s)	296
XspI	CTAG	2 cut(s)	462, 795
ZrmI	AGTACT	1 cut(s)	65

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.