Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0011872

Physical Location & Seq

Genomic Coordinates Reverse (-)

19792693 .. 19798010

Gene Structure 5318 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G215800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1344 bp

ATGGCAAGTTCTTATCCTGGAGCTGTTAGTGCTGTTCAGGTGGGGTCGTACTTTGTGGGGCAGTACTATCAGGTTCTTCAAAAGCAACCAGATGTTGTTCATCAGTTCTACTCAGAAGGAAGTTCCATTATCCATGTCGATGGTGATTCCACAGATTCTGCTTCCAGTATAGTGAAAATTCATACACACATACTGTCACTACATTTTACTTCAATTGAGGTCAAGACAATCAATTCTATCGATTCTTGGAATGGAGGTATTCTTGTGATGGTTTCTGGTTCTGTTAAAACAAGGGACTCCAGTGTAAAGAGGAAATTTGTCCAGACCTTCTTTCTGGCTCCTCAGGACAAAGGTTACTTTGTTCTCAACGATATCTTTCAGTACGTTGAAGATGGAGTTGTTTTACAACATCCTGCACCCATACAGTCAGAAGGCAGATATGATGTGCAACTGAGTGCCTCTAGCCCTCTTCCAGAGCCACCAGTTTCTGACTATGTTTTCGAGGAAGAGGCAAGGGAGTACATGAACTCTGTTGATATAGAAGATGATCCAGTTGACAAGTATAGTCTCCCAGAGCAACAGGTGCAGCAAGATTATGAGACTGAAGTTGTGGTGGAGGAAACTCCTGCAGAGGAAACATATGCTTCATTTCAAAGCGTGGTGAACACTGTTCAAGAAACACCTGCTGTTTCTGTGGAGGAACCGGTGGGAGAGCCTGAAAAGAAAACTTATGCTTCTATATTGCGAGTTGCTAAAGGGCCATCTGCACCAGCAATAACTCCACAACCTTATTCCAGAAGTGCTCAAGCTCCTTCAGAATGGAATTACACGCCTCAGCCCACTGTTGAACAATCCAACTCTGCTCTATCGTTTGTACCTGAGTCTGGGGCAGAAGCAGCAGAGGAAGGTTACGCGCTAGAGGAAGAAGGTGAACTGAAATCCGTCTATGTAAGAAACTTGCCTCCTACGGTTACTGAAGATGAGATCGAGCATGAGTTTAAGAACTTTGGTCAAATTAAACCTGATGGGGTCTTTGTTAGGGCTCGCAAGGAAATTGGAGTTTGCTATGCTTTTGTTGAATTTGAAGACCTTGTTGGCGTTCACAATGCACTCAAGGCATCTCCGATTCAGTTGGCTGGAAGGCAAGTCTACATTGAGGAGCGGAGACCAAACAGCACTGGAGCTGCTCGAGGAAGAGGAAGGGGGAGAGGCAGAGGCAGTTACCAACCTGAAGCCACAAGGGGGCGTTTTGGTGGCCGGGGTTCAGGCAGGGGTAGTTACCAGGACAGTGGAGATTACAGCAGAGCGAGAGGCAATGGTTTCCAACAGCGTGGCACACGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006508 GO:0006807 GO:0006914 GO:0008150 GO:0008152 GO:0009056 GO:0009987 GO:0010494 GO:0016236 GO:0016579 GO:0019538 GO:0032386 GO:0032879 GO:0032991 GO:0034517 GO:0035770 GO:0035973 GO:0036211 GO:0036464 GO:0043021 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043412 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0044877 GO:0050789 GO:0050794 GO:0051049 GO:0060341 GO:0060627 GO:0060628 GO:0061912 GO:0061919 GO:0065007 GO:0070646 GO:0070647 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1905538 GO:1990861 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NTF2 RRM_1

Protein Analysis

448

Amino Acids

49.27

Weight (kDa)

4.86

Isoelectric Point (pI)

57.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011872)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43960 AT5G43960
fragaria_vesca	FvH4_2g20540 FvH4_2g20540
malus_domestica	MD05G1189200.v1.1
prunus_persica	Prupe.8G215800_v2.0.a1
pyrus_communis	pycom05g17380 pycom10g11630 pycom10g15260
rosa_chinensis	RchiOBHm_Chr6g0286701
rosa_laevigata	RLG00000012551
rosa_multiflora	Rmu_sc0000560.1_g000014 Rmu_sc0007546.1_g000003
rosa_roxburghii	Rroxscaffold_7G00182100
rosa_rugosa	Rorug06G0182000
rosa_samantha	Rh6CG298500 Rh6DG290500 Rh6DG447300
rosa_wichuraiana	Rw6G025360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	691
Acc36I	ACCTGC	1 cut(s)	691
AccBSI	CCGCTC	1 cut(s)	1162
AccI	GTMKAC	1 cut(s)	1149
AccII	CGCG	1 cut(s)	914
AciI	CCGC	1 cut(s)	1162
AclWI	GGATC	1 cut(s)	542
AcoI	YGGCCR	1 cut(s)	1255
AcsI	RAATTY	3 cut(s)	177, 314, 1079
AcuI	CTGAAG	4 cut(s)	624, 798, 996, 1251
AfaI	GTAC	5 cut(s)	50, 65, 383, 521, 876
AfiI	CCNNNNNNNGG	2 cut(s)	884, 1242
AgeI	ACCGGT	1 cut(s)	703
AgsI	TTSAA	8 cut(s)	80, 213, 389, 653, 674, 848, 1079, 1085
AjnI	CCWGG	2 cut(s)	16, 1281
AjuI	GAANNNNNNNTTGG	2 cut(s)	1077, 1109
AluBI	AGCT	3 cut(s)	23, 809, 1184
AluI	AGCT	3 cut(s)	23, 809, 1184
Alw21I	GWGCWC	1 cut(s)	805
Alw26I	GTCTC	3 cut(s)	572, 593, 1159
AlwI	GGATC	1 cut(s)	542
AlwNI	CAGNNNCTG	2 cut(s)	158, 488
Ama87I	CYCGRG	1 cut(s)	1188
AoxI	GGCC	2 cut(s)	758, 1255
ApeKI	GCWGC	3 cut(s)	586, 896, 1184
ApoI	RAATTY	3 cut(s)	177, 314, 1079
ArsI	GACNNNNNNTTYG	2 cut(s)	482, 514
AsiGI	ACCGGT	1 cut(s)	703
AspLEI	GCGC	1 cut(s)	916
AspS9I	GGNCC	1 cut(s)	758
AsuC2I	CCSGG	1 cut(s)	1259
AsuHPI	GGTGA	3 cut(s)	155, 673, 941
AvaI	CYCGRG	1 cut(s)	1188
AxyI	CCTNAGG	1 cut(s)	342
BanII	GRGCYC	1 cut(s)	1045
BbsI	GAAGAC	1 cut(s)	1092
Bbv12I	GWGCWC	1 cut(s)	805
BbvCI	CCTCAGC	1 cut(s)	834
BbvI	GCAGC	3 cut(s)	598, 908, 1171
BccI	CCATC	5 cut(s)	134, 262, 386, 769, 1019
BciT130I	CCWGG	2 cut(s)	18, 1283
BcnI	CCSGG	1 cut(s)	1259
BcoDI	GTCTC	3 cut(s)	572, 593, 1159
BfaI	CTAG	2 cut(s)	462, 917
BfmI	CTRYAG	1 cut(s)	627
BfuAI	ACCTGC	1 cut(s)	691
BisI	GCNGC	3 cut(s)	587, 897, 1185
BlsI	GCNGC	3 cut(s)	588, 898, 1186
BmcAI	AGTACT	1 cut(s)	65
Bme1390I	CCNGG	3 cut(s)	18, 1259, 1283
BmeT110I	CYCGRG	1 cut(s)	1188
BmgT120I	GGNCC	1 cut(s)	758
BmiI	GGNNCC	2 cut(s)	339, 702
BmrFI	CCNGG	3 cut(s)	18, 1259, 1283
BmsI	GCATC	1 cut(s)	1127
BpiI	GAAGAC	1 cut(s)	1092
BpmI	CTGGAG	3 cut(s)	39, 283, 1200
Bpu10I	CCTNAGC	1 cut(s)	834
BpuEI	CTTGAG	2 cut(s)	789, 1097
BpuMI	CCSGG	1 cut(s)	1259
Bsa29I	ATCGAT	1 cut(s)	240
BsaI	GGTCTC	1 cut(s)	1159
BsaJI	CCNNGG	1 cut(s)	1258
BsaWI	WCCGGW	1 cut(s)	703
Bsc4I	CCNNNNNNNGG	2 cut(s)	884, 1242
Bse118I	RCCGGY	1 cut(s)	703
Bse1I	ACTGG	5 cut(s)	165, 300, 482, 551, 1183
Bse21I	CCTNAGG	1 cut(s)	342
Bse3DI	GCAATG	1 cut(s)	1321
BseBI	CCWGG	2 cut(s)	18, 1283
BseCI	ATCGAT	1 cut(s)	240
BseDI	CCNNGG	1 cut(s)	1258
BseGI	GGATG	1 cut(s)	409
BseLI	CCNNNNNNNGG	2 cut(s)	884, 1242
BseMI	GCAATG	1 cut(s)	1321
BseMII	CTCAG	5 cut(s)	126, 356, 443, 848, 870
BseNI	ACTGG	5 cut(s)	165, 300, 482, 551, 1183
BseRI	GAGGAG	2 cut(s)	330, 1172
BseXI	GCAGC	3 cut(s)	598, 908, 1171
BsgI	GTGCAG	3 cut(s)	399, 605, 750
Bsh1236I	CGCG	1 cut(s)	914
BshFI	GGCC	2 cut(s)	760, 1257
BshTI	ACCGGT	1 cut(s)	703
BshVI	ATCGAT	1 cut(s)	240
BsiHKAI	GWGCWC	1 cut(s)	805
BsiHKCI	CYCGRG	1 cut(s)	1188
BsiSI	CCGG	2 cut(s)	704, 1258
BslFI	GGGAC	1 cut(s)	308
BslI	CCNNNNNNNGG	2 cut(s)	884, 1242
BsmAI	GTCTC	3 cut(s)	572, 593, 1159
BsmFI	GGGAC	1 cut(s)	308
BsnI	GGCC	2 cut(s)	760, 1257
Bso31I	GGTCTC	1 cut(s)	1159
BsoBI	CYCGRG	1 cut(s)	1188
Bsp1286I	GDGCHC	2 cut(s)	805, 1045
Bsp143I	GATC	2 cut(s)	547, 984
BspACI	CCGC	1 cut(s)	1162
BspANI	GGCC	2 cut(s)	760, 1257
BspCNI	CTCAG	5 cut(s)	125, 355, 444, 847, 871
BspDI	ATCGAT	1 cut(s)	240
BspFNI	CGCG	1 cut(s)	914
BspLI	GGNNCC	2 cut(s)	339, 702
BspMAI	CTGCAG	1 cut(s)	631
BspMI	ACCTGC	1 cut(s)	691
BspPI	GGATC	1 cut(s)	542
BspTNI	GGTCTC	1 cut(s)	1159
BsrBI	CCGCTC	1 cut(s)	1162
BsrDI	GCAATG	1 cut(s)	1321
BsrFI	RCCGGY	1 cut(s)	703
BsrI	ACTGG	5 cut(s)	165, 300, 482, 551, 1183
BssAI	RCCGGY	1 cut(s)	703
BssECI	CCNNGG	1 cut(s)	1258
BssMI	GATC	2 cut(s)	547, 984
Bst2UI	CCWGG	2 cut(s)	18, 1283
Bst4CI	ACNGT	6 cut(s)	195, 426, 670, 844, 970, 1289
Bst6I	CTCTTC	3 cut(s)	474, 501, 1189
BstAPI	GCANNNNNTGC	1 cut(s)	583
BstC8I	GCNNGC	1 cut(s)	1045
BstDEI	CTNAG	5 cut(s)	112, 342, 452, 834, 879
BstF5I	GGATG	1 cut(s)	409
BstFNI	CGCG	1 cut(s)	914
BstHHI	GCGC	1 cut(s)	916
BstKTI	GATC	2 cut(s)	550, 987
BstMAI	GTCTC	3 cut(s)	572, 593, 1159
BstMBI	GATC	2 cut(s)	547, 984
BstMWI	GCNNNNNNNGC	4 cut(s)	29, 583, 896, 1115
BstNI	CCWGG	2 cut(s)	18, 1283
BstSCI	CCNGG	3 cut(s)	16, 1257, 1281
BstSFI	CTRYAG	1 cut(s)	627
BstUI	CGCG	1 cut(s)	914
BstV1I	GCAGC	3 cut(s)	598, 908, 1171
BstV2I	GAAGAC	1 cut(s)	1092
BstXI	CCANNNNNNTGG	3 cut(s)	140, 1289, 1331
Bsu15I	ATCGAT	1 cut(s)	240
Bsu36I	CCTNAGG	1 cut(s)	342
BsuRI	GGCC	2 cut(s)	760, 1257
BsuTUI	ATCGAT	1 cut(s)	240
BtsCI	GGATG	1 cut(s)	409
BtsIMutI	CAGTG	5 cut(s)	307, 666, 840, 1176, 1294
BveI	ACCTGC	1 cut(s)	691
Cac8I	GCNNGC	1 cut(s)	1045
CaiI	CAGNNNCTG	2 cut(s)	158, 488
CfoI	GCGC	1 cut(s)	916
Cfr10I	RCCGGY	1 cut(s)	703
Cfr13I	GGNCC	1 cut(s)	758
ClaI	ATCGAT	1 cut(s)	240
Csp6I	GTAC	5 cut(s)	49, 64, 382, 520, 875
CspAI	ACCGGT	1 cut(s)	703
CviAII	CATG	3 cut(s)	134, 523, 992
CviQI	GTAC	5 cut(s)	49, 64, 382, 520, 875
DdeI	CTNAG	5 cut(s)	112, 342, 452, 834, 879
DpnI	GATC	2 cut(s)	549, 986
DpnII	GATC	2 cut(s)	547, 984
EaeI	YGGCCR	1 cut(s)	1255
Eam1104I	CTCTTC	3 cut(s)	474, 501, 1189
EarI	CTCTTC	3 cut(s)	474, 501, 1189
Eco24I	GRGCYC	1 cut(s)	1045
Eco31I	GGTCTC	1 cut(s)	1159
Eco32I	GATATC	1 cut(s)	373
Eco57I	CTGAAG	4 cut(s)	624, 798, 996, 1251
Eco81I	CCTNAGG	1 cut(s)	342
Eco88I	CYCGRG	1 cut(s)	1188
EcoRII	CCWGG	2 cut(s)	16, 1281
EcoRV	GATATC	1 cut(s)	373
EcoT38I	GRGCYC	1 cut(s)	1045
FaeI	CATG	3 cut(s)	137, 526, 995
FaqI	GGGAC	1 cut(s)	308
FatI	CATG	3 cut(s)	133, 522, 991
FauNDI	CATATG	1 cut(s)	640
FblI	GTMKAC	1 cut(s)	1149
Fnu4HI	GCNGC	3 cut(s)	587, 897, 1185
FokI	GGATG	1 cut(s)	396
FriOI	GRGCYC	1 cut(s)	1045
Fsp4HI	GCNGC	3 cut(s)	587, 897, 1185
FspBI	CTAG	2 cut(s)	462, 917
GlaI	GCGC	1 cut(s)	915
GluI	GCNGC	3 cut(s)	587, 897, 1185
GsuI	CTGGAG	3 cut(s)	39, 283, 1200
HaeIII	GGCC	2 cut(s)	760, 1257
HapII	CCGG	2 cut(s)	704, 1258
HhaI	GCGC	1 cut(s)	916
Hin1II	CATG	3 cut(s)	137, 526, 995
Hin6I	GCGC	1 cut(s)	914
HinP1I	GCGC	1 cut(s)	914
HincII	GTYRAC	1 cut(s)	556
HindII	GTYRAC	1 cut(s)	556
HinfI	GANTC	6 cut(s)	146, 155, 242, 296, 881, 1126
HpaII	CCGG	2 cut(s)	704, 1258
HphI	GGTGA	3 cut(s)	155, 673, 941
Hpy166II	GTNNAC	5 cut(s)	556, 664, 932, 1102, 1150
Hpy188I	TCNGA	5 cut(s)	115, 430, 490, 817, 1125
Hpy188III	TCNNGA	6 cut(s)	223, 322, 344, 473, 674, 795
Hpy8I	GTNNAC	5 cut(s)	556, 664, 932, 1102, 1150
HpyAV	CCTTC	8 cut(s)	110, 337, 425, 822, 899, 920, 1134, 1194
HpyCH4III	ACNGT	6 cut(s)	195, 426, 670, 844, 970, 1289
HpyCH4IV	ACGT	1 cut(s)	384
HpyCH4V	TGCA	6 cut(s)	416, 448, 586, 629, 767, 1109
HpyF10VI	GCNNNNNNNGC	4 cut(s)	29, 583, 896, 1115
HpyF3I	CTNAG	5 cut(s)	112, 342, 452, 834, 879
HpySE526I	ACGT	1 cut(s)	384
Hsp92II	CATG	3 cut(s)	137, 526, 995
HspAI	GCGC	1 cut(s)	914
Kzo9I	GATC	2 cut(s)	547, 984
LmnI	GCTCC	5 cut(s)	20, 343, 814, 1159, 1181
Lsp1109I	GCAGC	3 cut(s)	598, 908, 1171
LweI	GCATC	1 cut(s)	1127
MaeI	CTAG	2 cut(s)	462, 917
MaeII	ACGT	1 cut(s)	384
MaeIII	GTNAC	6 cut(s)	195, 353, 908, 970, 1220, 1277
MalI	GATC	2 cut(s)	549, 986
MbiI	CCGCTC	1 cut(s)	1162
MboI	GATC	2 cut(s)	547, 984
MboII	GAAGA	9 cut(s)	68, 401, 461, 518, 554, 935, 989, 1097, 1206
MfeI	CAATTG	1 cut(s)	213
MhlI	GDGCHC	2 cut(s)	805, 1045
MluCI	AATT	8 cut(s)	177, 213, 232, 314, 823, 1014, 1053, 1079
MlyI	GAGTC	2 cut(s)	290, 890
MmeI	TCCRAC	1 cut(s)	879
MseI	TTAA	3 cut(s)	285, 999, 1017
MslI	CAYNNNNRTG	1 cut(s)	138
MspI	CCGG	2 cut(s)	704, 1258
MspR9I	CCNGG	3 cut(s)	18, 1259, 1283
MunI	CAATTG	1 cut(s)	213
MvaI	CCWGG	2 cut(s)	18, 1283
MvnI	CGCG	1 cut(s)	914
MwoI	GCNNNNNNNGC	4 cut(s)	29, 583, 896, 1115
NciI	CCSGG	1 cut(s)	1259
NdeI	CATATG	1 cut(s)	640
NdeII	GATC	2 cut(s)	547, 984
NlaIII	CATG	3 cut(s)	137, 526, 995
NlaIV	GGNNCC	2 cut(s)	339, 702
NmuCI	GTSAC	1 cut(s)	195
PaeR7I	CTCGAG	1 cut(s)	1188
PaqCI	CACCTGC	1 cut(s)	691
PfeI	GAWTC	4 cut(s)	146, 155, 242, 1126
PfoI	TCCNGGA	1 cut(s)	16
PinAI	ACCGGT	1 cut(s)	703
PkrI	GCNGC	3 cut(s)	588, 898, 1186
PleI	GAGTC	2 cut(s)	290, 889
PpsI	GAGTC	2 cut(s)	290, 889
Psp6I	CCWGG	2 cut(s)	16, 1281
PspGI	CCWGG	2 cut(s)	16, 1281
PspN4I	GGNNCC	2 cut(s)	339, 702
PspPI	GGNCC	1 cut(s)	758
PspXI	VCTCGAGB	1 cut(s)	1188
PstI	CTGCAG	1 cut(s)	631
PstNI	CAGNNNCTG	2 cut(s)	158, 488
RsaI	GTAC	5 cut(s)	50, 65, 383, 521, 876
RsaNI	GTAC	5 cut(s)	49, 64, 382, 520, 875
RseI	CAYNNNNRTG	1 cut(s)	138
SaqAI	TTAA	3 cut(s)	285, 999, 1017
SatI	GCNGC	3 cut(s)	587, 897, 1185
Sau3AI	GATC	2 cut(s)	547, 984
Sau96I	GGNCC	1 cut(s)	758
ScaI	AGTACT	1 cut(s)	65
SchI	GAGTC	2 cut(s)	290, 890
ScrFI	CCNGG	3 cut(s)	18, 1259, 1283
SduI	GDGCHC	2 cut(s)	805, 1045
SfaNI	GCATC	1 cut(s)	1127
SfcI	CTRYAG	1 cut(s)	627
Sfr274I	CTCGAG	1 cut(s)	1188
SlaI	CTCGAG	1 cut(s)	1188
SmiMI	CAYNNNNRTG	1 cut(s)	138
SmlI	CTYRAG	3 cut(s)	804, 1112, 1188
SmoI	CTYRAG	3 cut(s)	804, 1112, 1188
Sse9I	AATT	8 cut(s)	177, 213, 232, 314, 823, 1014, 1053, 1079
SsiI	CCGC	1 cut(s)	1162
SspMI	CTAG	2 cut(s)	462, 917
StyD4I	CCNGG	3 cut(s)	16, 1257, 1281
TaaI	ACNGT	6 cut(s)	195, 426, 670, 844, 970, 1289
TaiI	ACGT	1 cut(s)	387
TaqI	TCGA	5 cut(s)	138, 240, 501, 987, 1189
TasI	AATT	8 cut(s)	177, 213, 232, 314, 823, 1014, 1053, 1079
TatI	WGTACW	2 cut(s)	63, 519
TfiI	GAWTC	4 cut(s)	146, 155, 242, 1126
Tru1I	TTAA	3 cut(s)	285, 999, 1017
Tru9I	TTAA	3 cut(s)	285, 999, 1017
TscAI	CASTG	5 cut(s)	307, 673, 847, 1183, 1294
TseFI	GTSAC	1 cut(s)	195
TseI	GCWGC	3 cut(s)	586, 896, 1184
Tsp45I	GTSAC	1 cut(s)	195
TspDTI	ATGAA	4 cut(s)	89, 170, 539, 636
TspGWI	ACGGA	1 cut(s)	931
TspRI	CASTG	5 cut(s)	307, 673, 847, 1183, 1294
XapI	RAATTY	3 cut(s)	177, 314, 1079
XhoI	CTCGAG	1 cut(s)	1188
XmiI	GTMKAC	1 cut(s)	1149
XspI	CTAG	2 cut(s)	462, 917
ZrmI	AGTACT	1 cut(s)	65

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.