FvH4_2g20840

Peptide transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0017245
Physical Location & Seq
Forward (+)
17390822 .. 17392682
1861 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g20840.t1

Sequence Viewer

Length: 915 bp
ATGGCAAAAGTAGAGGAGAAAGGCCTTGAAAATGCTGGACTACTGGATTACACAGAAGATGGGACTACAGACCTCAAAGGTAGACCGATTACAAGATCAAAGACTGGAAGATGGAGAGCTTGCTCTTTCATTGTAGATAAACAACGTCGGTTGGTCACTTGGCTATGGACTCCCAACAATAGGGCTTGTGATCTCAGTGTTAGAATTCTTGGTCGGCACCCCATTTTACAGGCACAAAATGCCTTCAGGGAGTCCTATTACAAGGGTTGCTCAGGTTCGATCCTTGACCGAGCTGCAGTGAAAACTCCTGGGCCAAGCACACCATGGACTCTTTGTCCAGTGACCCAAGTAGAAGAAACCAAGCAAATGATGAAGATGATTCCAGTTTTACTCACCACATTCATACCCTCCATTACCATAACTCAATCCCACACACTTTTCATAAAGCAAGGCACCACTCTTGATGATTCCATAGGTCCCCATTTCAAAATCCCACCTGCATCTTTCGGAGCCTTCATAACCATTTTCCTGCTGGTAACCCTCGCAATCTACGACCGCTTCTTGGTTCCAACACTCCGGCGTTACACCCAAAACCCTATAGGAATCACATTGCTCAAAAGAATGGGAATAGGGTTTGTGATGCAGATAGTGATCATGGTCCTTGCTTGCTCGGTTGAGAAGAAACGACCTCTCATCGCAAGGGAAAACGGCATTGTTGGGAAAGGAGAGAAAGTTCCACTCACAATATTCATTCTGCTGCCTCAGTTTGCTCTGATGGGTGTGGCTGATGCGTTTGGGGAAGTTGCAAAGATAGAGTTCTTCTACGACCAAGCACCACAAGGGCATGAAGAGCATGGGGACATCACTACACTAGCAGCTATGCAGTTGGGAGTTTCCTCAGTAGTGTTCTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PTR2

Protein Analysis

305

Amino Acids

33.85

Weight (kDa)

9.28

Isoelectric Point (pI)

40.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PTR2 PF00854 107 - 284 6e-36 POT family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017245)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g20840
prunus_persica Prupe.8G218300_v2.0.a1 Prupe.8G218300_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0287231
rosa_laevigata RLG00000012516
rosa_multiflora Rmu_sc0005297.1_g000025
rosa_roxburghii Rroxscaffold_7G00181650
rosa_rugosa Rorug06G0185900 Rorug06G0186000
rosa_samantha Rh6BG302900 Rh6CG310900 Rh6DG294600
rosa_wichuraiana Rw6G025700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 505
Acc36I ACCTGC 1 cut(s) 505
AccB1I GGYRCC 2 cut(s) 216, 452
AccI GTMKAC 1 cut(s) 82
AciI CCGC 1 cut(s) 556
AclWI GGATC 1 cut(s) 274
AcsI RAATTY 1 cut(s) 204
AcuI CTGAAG 1 cut(s) 229
AfiI CCNNNNNNNGG 2 cut(s) 180, 562
AgsI TTSAA 2 cut(s) 29, 487
AhdI GACNNNNNGTC 1 cut(s) 333
AjnI CCWGG 1 cut(s) 307
AloI GAACNNNNNNTCC 2 cut(s) 717, 749
AluBI AGCT 3 cut(s) 119, 293, 878
AluI AGCT 3 cut(s) 119, 293, 878
AlwI GGATC 1 cut(s) 274
AoxI GGCC 2 cut(s) 22, 311
ApeKI GCWGC 3 cut(s) 293, 757, 875
ApoI RAATTY 1 cut(s) 204
AspS9I GGNCC 3 cut(s) 311, 476, 658
AsuHPI GGTGA 1 cut(s) 385
AvaII GGWCC 2 cut(s) 476, 658
BanI GGYRCC 2 cut(s) 216, 452
BbvI GCAGC 3 cut(s) 280, 744, 887
BccI CCATC 3 cut(s) 53, 105, 769
BceAI ACGGC 1 cut(s) 724
BciT130I CCWGG 1 cut(s) 309
BclI TGATCA 1 cut(s) 651
BfaI CTAG 1 cut(s) 872
BfmI CTRYAG 3 cut(s) 66, 294, 597
BfuAI ACCTGC 1 cut(s) 505
BisI GCNGC 3 cut(s) 294, 758, 876
BlsI GCNGC 3 cut(s) 295, 759, 877
Bme1390I CCNGG 1 cut(s) 309
Bme18I GGWCC 2 cut(s) 476, 658
BmeRI GACNNNNNGTC 1 cut(s) 333
BmgT120I GGNCC 3 cut(s) 311, 476, 658
BmiI GGNNCC 5 cut(s) 218, 454, 478, 511, 567
BmrFI CCNGG 1 cut(s) 309
BmsI GCATC 3 cut(s) 509, 630, 778
Bpu10I CCTNAGC 1 cut(s) 271
BsaBI GATNNNNATC 1 cut(s) 650
BsaJI CCNNGG 2 cut(s) 308, 323
BsaXI ACNNNNNCTCC 2 cut(s) 717, 747
Bsc4I CCNNNNNNNGG 2 cut(s) 180, 562
Bse1I ACTGG 4 cut(s) 48, 109, 338, 383
Bse3DI GCAATG 1 cut(s) 608
Bse8I GATNNNNATC 1 cut(s) 650
BseBI CCWGG 1 cut(s) 309
BseDI CCNNGG 2 cut(s) 308, 323
BseJI GATNNNNATC 1 cut(s) 650
BseLI CCNNNNNNNGG 2 cut(s) 180, 562
BseMI GCAATG 1 cut(s) 608
BseMII CTCAG 4 cut(s) 208, 285, 776, 912
BseNI ACTGG 4 cut(s) 48, 109, 338, 383
BseRI GAGGAG 1 cut(s) 29
BseXI GCAGC 3 cut(s) 280, 744, 887
Bsh1285I CGRYCG 1 cut(s) 556
BshFI GGCC 2 cut(s) 24, 313
BshNI GGYRCC 2 cut(s) 216, 452
BsiEI CGRYCG 1 cut(s) 556
BsiSI CCGG 1 cut(s) 577
BslFI GGGAC 3 cut(s) 76, 462, 872
BslI CCNNNNNNNGG 2 cut(s) 180, 562
BsmFI GGGAC 3 cut(s) 76, 462, 872
BsnI GGCC 2 cut(s) 24, 313
Bsp143I GATC 4 cut(s) 95, 190, 279, 651
Bsp19I CCATGG 1 cut(s) 323
BspACI CCGC 1 cut(s) 556
BspANI GGCC 2 cut(s) 24, 313
BspCNI CTCAG 4 cut(s) 207, 284, 775, 911
BspLI GGNNCC 5 cut(s) 218, 454, 478, 511, 567
BspMAI CTGCAG 1 cut(s) 298
BspMI ACCTGC 1 cut(s) 505
BspPI GGATC 1 cut(s) 274
BspQI GCTCTTC 1 cut(s) 843
BspT107I GGYRCC 2 cut(s) 216, 452
BsrDI GCAATG 1 cut(s) 608
BsrI ACTGG 4 cut(s) 48, 109, 338, 383
BssECI CCNNGG 2 cut(s) 308, 323
BssMI GATC 4 cut(s) 95, 190, 279, 651
BssT1I CCWWGG 1 cut(s) 323
Bst2UI CCWGG 1 cut(s) 309
Bst6I CTCTTC 1 cut(s) 843
BstAPI GCANNNNNTGC 1 cut(s) 239
BstC8I GCNNGC 2 cut(s) 121, 667
BstDEI CTNAG 4 cut(s) 194, 271, 762, 898
BstDSI CCRYGG 1 cut(s) 323
BstEII GGTNACC 1 cut(s) 535
BstKTI GATC 4 cut(s) 98, 193, 282, 654
BstMBI GATC 4 cut(s) 95, 190, 279, 651
BstMCI CGRYCG 1 cut(s) 556
BstMWI GCNNNNNNNGC 2 cut(s) 239, 850
BstNI CCWGG 1 cut(s) 309
BstPI GGTNACC 1 cut(s) 535
BstSCI CCNGG 1 cut(s) 307
BstSFI CTRYAG 3 cut(s) 66, 294, 597
BstV1I GCAGC 3 cut(s) 280, 744, 887
BsuRI GGCC 2 cut(s) 24, 313
BtgI CCRYGG 1 cut(s) 323
BtgZI GCGATG 1 cut(s) 679
BtsI GCAGTG 1 cut(s) 303
BtsIMutI CAGTG 3 cut(s) 202, 303, 345
BveI ACCTGC 1 cut(s) 505
Cac8I GCNNGC 2 cut(s) 121, 667
Cfr13I GGNCC 3 cut(s) 311, 476, 658
CviAII CATG 4 cut(s) 324, 655, 845, 854
CviJI RGCY 9 cut(s) 24, 119, 163, 185, 293, 313, 512, 785, 878
CviKI_1 RGCY 9 cut(s) 24, 119, 163, 185, 293, 313, 512, 785, 878
DdeI CTNAG 4 cut(s) 194, 271, 762, 898
DpnI GATC 4 cut(s) 97, 192, 281, 653
DpnII GATC 4 cut(s) 95, 190, 279, 651
DriI GACNNNNNGTC 1 cut(s) 333
Eam1104I CTCTTC 1 cut(s) 843
Eam1105I GACNNNNNGTC 1 cut(s) 333
EarI CTCTTC 1 cut(s) 843
Eco130I CCWWGG 1 cut(s) 323
Eco147I AGGCCT 1 cut(s) 24
Eco47I GGWCC 2 cut(s) 476, 658
Eco57I CTGAAG 1 cut(s) 229
Eco91I GGTNACC 1 cut(s) 535
EcoO109I RGGNCCY 1 cut(s) 476
EcoO65I GGTNACC 1 cut(s) 535
EcoRI GAATTC 1 cut(s) 204
EcoRII CCWGG 1 cut(s) 307
EcoT14I CCWWGG 1 cut(s) 323
ErhI CCWWGG 1 cut(s) 323
FaeI CATG 4 cut(s) 327, 658, 848, 857
FaqI GGGAC 3 cut(s) 76, 462, 872
FatI CATG 4 cut(s) 323, 654, 844, 853
FbaI TGATCA 1 cut(s) 651
FblI GTMKAC 1 cut(s) 82
Fnu4HI GCNGC 3 cut(s) 294, 758, 876
Fsp4HI GCNGC 3 cut(s) 294, 758, 876
FspBI CTAG 1 cut(s) 872
GluI GCNGC 3 cut(s) 294, 758, 876
HaeIII GGCC 2 cut(s) 24, 313
HapII CCGG 1 cut(s) 577
Hin1II CATG 4 cut(s) 327, 658, 848, 857
HinfI GANTC 6 cut(s) 169, 251, 328, 379, 467, 603
HpaII CCGG 1 cut(s) 577
HphI GGTGA 1 cut(s) 385
Hpy166II GTNNAC 1 cut(s) 83
Hpy188I TCNGA 3 cut(s) 509, 774, 914
Hpy188III TCNNGA 1 cut(s) 461
Hpy8I GTNNAC 1 cut(s) 83
Hpy99I CGWCG 1 cut(s) 150
HpyAV CCTTC 2 cut(s) 253, 523
HpyCH4IV ACGT 1 cut(s) 145
HpyCH4V TGCA 5 cut(s) 296, 500, 643, 806, 883
HpyF10VI GCNNNNNNNGC 2 cut(s) 239, 850
HpyF3I CTNAG 4 cut(s) 194, 271, 762, 898
HpySE526I ACGT 1 cut(s) 145
Hsp92II CATG 4 cut(s) 327, 658, 848, 857
Ksp22I TGATCA 1 cut(s) 651
Kzo9I GATC 4 cut(s) 95, 190, 279, 651
LguI GCTCTTC 1 cut(s) 843
LmnI GCTCC 1 cut(s) 509
Lsp1109I GCAGC 3 cut(s) 280, 744, 887
LweI GCATC 3 cut(s) 509, 630, 778
MaeI CTAG 1 cut(s) 872
MaeII ACGT 1 cut(s) 145
MaeIII GTNAC 4 cut(s) 154, 340, 535, 581
MalI GATC 4 cut(s) 97, 192, 281, 653
MboI GATC 4 cut(s) 95, 190, 279, 651
MboII GAAGA 8 cut(s) 68, 120, 365, 385, 691, 811, 860, 901
MluCI AATT 1 cut(s) 204
MlyI GAGTC 3 cut(s) 163, 260, 322
MmeI TCCRAC 1 cut(s) 593
MnlI CCTC 7 cut(s) 7, 83, 418, 551, 699, 771, 907
MspI CCGG 1 cut(s) 577
MspR9I CCNGG 1 cut(s) 309
MvaI CCWGG 1 cut(s) 309
MwoI GCNNNNNNNGC 2 cut(s) 239, 850
NcoI CCATGG 1 cut(s) 323
NdeII GATC 4 cut(s) 95, 190, 279, 651
NlaIII CATG 4 cut(s) 327, 658, 848, 857
NlaIV GGNNCC 5 cut(s) 218, 454, 478, 511, 567
NmuCI GTSAC 2 cut(s) 154, 340
PaqCI CACCTGC 1 cut(s) 505
PceI AGGCCT 1 cut(s) 24
PciSI GCTCTTC 1 cut(s) 843
PcsI WCGNNNNNNNCGW 1 cut(s) 549
PfeI GAWTC 3 cut(s) 379, 467, 603
PkrI GCNGC 3 cut(s) 295, 759, 877
PleI GAGTC 3 cut(s) 163, 259, 322
PpsI GAGTC 3 cut(s) 163, 259, 322
PpuMI RGGWCCY 1 cut(s) 476
Psp5II RGGWCCY 1 cut(s) 476
Psp6I CCWGG 1 cut(s) 307
PspEI GGTNACC 1 cut(s) 535
PspGI CCWGG 1 cut(s) 307
PspN4I GGNNCC 5 cut(s) 218, 454, 478, 511, 567
PspPI GGNCC 3 cut(s) 311, 476, 658
PspPPI RGGWCCY 1 cut(s) 476
PstI CTGCAG 1 cut(s) 298
SapI GCTCTTC 1 cut(s) 843
SatI GCNGC 3 cut(s) 294, 758, 876
Sau3AI GATC 4 cut(s) 95, 190, 279, 651
Sau96I GGNCC 3 cut(s) 311, 476, 658
SchI GAGTC 3 cut(s) 163, 260, 322
ScrFI CCNGG 1 cut(s) 309
SfaNI GCATC 3 cut(s) 509, 630, 778
SfcI CTRYAG 3 cut(s) 66, 294, 597
SinI GGWCC 2 cut(s) 476, 658
Sse9I AATT 1 cut(s) 204
SseBI AGGCCT 1 cut(s) 24
SsiI CCGC 1 cut(s) 556
SspI AATATT 1 cut(s) 747
SspMI CTAG 1 cut(s) 872
StuI AGGCCT 1 cut(s) 24
StyD4I CCNGG 1 cut(s) 307
StyI CCWWGG 1 cut(s) 323
TaiI ACGT 1 cut(s) 148
TaqI TCGA 1 cut(s) 278
TaqII GACCGA 2 cut(s) 100, 303
TasI AATT 1 cut(s) 204
TfiI GAWTC 3 cut(s) 379, 467, 603
TscAI CASTG 3 cut(s) 202, 303, 345
TseFI GTSAC 2 cut(s) 154, 340
TseI GCWGC 3 cut(s) 293, 757, 875
Tsp45I GTSAC 2 cut(s) 154, 340
TspDTI ATGAA 7 cut(s) 118, 386, 391, 430, 505, 739, 861
TspRI CASTG 3 cut(s) 202, 303, 345
VpaK11BI GGWCC 2 cut(s) 476, 658
XapI RAATTY 1 cut(s) 204
XcmI CCANNNNNNNNNTGG 2 cut(s) 321, 529
XmiI GTMKAC 1 cut(s) 82
XspI CTAG 1 cut(s) 872
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.