Rh6DG294600

Peptide transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0017245
Physical Location & Seq
Forward (+)
49583384 .. 49584127
744 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG294600.1

Sequence Viewer

Length: 744 bp
ATGAAGATGATTCCAGTTTTACTCACCACATTCATTCCTTCCATTATCATAGCTCAAACCCACACCCTTTTCATAAAGCAGGGCACCACTCTAGATGCTTCCATGGGTCCCCATTTCAAAATCCCCCCTGCATCTTTCGGAGCCTTCGTAACCATTTTCGTCCTAGTAACCCTCGCAATCTATGACCGCTACTTGGTTCCAACACTACGGACTTACACCCAAAACCCTAGGGGAATCACATTGCTCCAAAGAATGGGAATAGGGTATGTGGTGCAGATCGTAATCATGGTCCTTGCTTGCTTGGTTGAGAAAAAACGACTTCTCGTCGCAAGGGAAAACGGCATTGTTGGCAAAGGAGAGAAAGTTCCCCTCACAATATTTATTCTGCTGCCTCAGTTTGCTCTTATGGGTGTGGCTGATGCGTTTCTGGAAGTTGCAAAGATAGAGTTCTTCTACGACCAAGCACCACAAGGCATGAAGAGCATGGGGACATCATATTATACTAGCAGCTATGCAGTTGGGAGTTTCCTCAGTAGTTTTCTTCTGAAAACAGTTTCTGATATGACCAAGACAGATGGCCACAAAGGTTGGGTCTTGGACAATTTGAATGTATCACGCTTAGACTACTACTATGCATTGTTGGCTGGTTTGGTATTTCTTAATTTCTTATTATTTTTGGTTGTTGCAAAGTCTTTTGCTTATAATGTTGACATCTCGGAAGCCAAGATAGCTGTGGAAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PTR2

Protein Analysis

247

Amino Acids

27.39

Weight (kDa)

9.18

Isoelectric Point (pI)

25.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PTR2 PF00854 2 - 198 6.3e-40 POT family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017245)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g20840
prunus_persica Prupe.8G218300_v2.0.a1 Prupe.8G218300_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0287231
rosa_laevigata RLG00000012516
rosa_multiflora Rmu_sc0005297.1_g000025
rosa_roxburghii Rroxscaffold_7G00181650
rosa_rugosa Rorug06G0185900 Rorug06G0186000
rosa_samantha Rh6BG302900 Rh6CG310900 Rh6DG294600
rosa_wichuraiana Rw6G025700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 702
AccB1I GGYRCC 1 cut(s) 83
AccB7I CCANNNNNTGG 1 cut(s) 253
AciI CCGC 1 cut(s) 187
AcoI YGGCCR 1 cut(s) 577
AfiI CCNNNNNNNGG 2 cut(s) 193, 253
AgsI TTSAA 2 cut(s) 118, 607
AhdI GACNNNNNGTC 1 cut(s) 323
AloI GAACNNNNNNTCC 2 cut(s) 348, 380
AluBI AGCT 4 cut(s) 53, 510, 731, 740
AluI AGCT 4 cut(s) 53, 510, 731, 740
AlwNI CAGNNNCTG 1 cut(s) 557
AoxI GGCC 1 cut(s) 577
ApeKI GCWGC 2 cut(s) 388, 507
ArsI GACNNNNNNTTYG 2 cut(s) 576, 608
AspA2I CCTAGG 1 cut(s) 227
AspS9I GGNCC 2 cut(s) 107, 289
AsuHPI GGTGA 1 cut(s) 16
AvaII GGWCC 2 cut(s) 107, 289
AvrII CCTAGG 1 cut(s) 227
BaeGI GKGCMC 1 cut(s) 86
BalI TGGCCA 1 cut(s) 579
BanI GGYRCC 1 cut(s) 83
BbvI GCAGC 2 cut(s) 375, 519
BccI CCATC 1 cut(s) 569
BceAI ACGGC 1 cut(s) 355
BfaI CTAG 4 cut(s) 92, 164, 228, 504
BisI GCNGC 2 cut(s) 389, 508
BlnI CCTAGG 1 cut(s) 227
BlsI GCNGC 2 cut(s) 390, 509
Bme18I GGWCC 2 cut(s) 107, 289
BmeRI GACNNNNNGTC 1 cut(s) 323
BmgT120I GGNCC 2 cut(s) 107, 289
BmiI GGNNCC 5 cut(s) 85, 108, 109, 142, 198
BmsI GCATC 3 cut(s) 85, 140, 409
BsaBI GATNNNNATC 1 cut(s) 281
BsaJI CCNNGG 2 cut(s) 102, 227
BsaXI ACNNNNNCTCC 4 cut(s) 132, 162, 348, 378
Bsc4I CCNNNNNNNGG 2 cut(s) 193, 253
Bse1I ACTGG 1 cut(s) 14
Bse3DI GCAATG 1 cut(s) 239
Bse8I GATNNNNATC 1 cut(s) 281
BseDI CCNNGG 2 cut(s) 102, 227
BseJI GATNNNNATC 1 cut(s) 281
BseLI CCNNNNNNNGG 2 cut(s) 193, 253
BseMI GCAATG 1 cut(s) 239
BseMII CTCAG 2 cut(s) 407, 544
BseNI ACTGG 1 cut(s) 14
BseSI GKGCMC 1 cut(s) 86
BseXI GCAGC 2 cut(s) 375, 519
BsgI GTGCAG 1 cut(s) 293
BshFI GGCC 1 cut(s) 579
BshNI GGYRCC 1 cut(s) 83
BslFI GGGAC 2 cut(s) 93, 502
BslI CCNNNNNNNGG 2 cut(s) 193, 253
BsmFI GGGAC 2 cut(s) 93, 502
BsnI GGCC 1 cut(s) 579
Bsp1286I GDGCHC 1 cut(s) 86
Bsp143I GATC 1 cut(s) 276
Bsp19I CCATGG 1 cut(s) 102
BspACI CCGC 1 cut(s) 187
BspANI GGCC 1 cut(s) 579
BspCNI CTCAG 2 cut(s) 406, 543
BspLI GGNNCC 5 cut(s) 85, 108, 109, 142, 198
BspQI GCTCTTC 1 cut(s) 473
BspT107I GGYRCC 1 cut(s) 83
BsrDI GCAATG 1 cut(s) 239
BsrI ACTGG 1 cut(s) 14
BssECI CCNNGG 2 cut(s) 102, 227
BssMI GATC 1 cut(s) 276
BssT1I CCWWGG 2 cut(s) 102, 227
Bst4CI ACNGT 1 cut(s) 553
Bst6I CTCTTC 1 cut(s) 473
BstC8I GCNNGC 1 cut(s) 298
BstDEI CTNAG 3 cut(s) 393, 530, 619
BstDSI CCRYGG 1 cut(s) 102
BstKTI GATC 1 cut(s) 279
BstMBI GATC 1 cut(s) 276
BstMWI GCNNNNNNNGC 5 cut(s) 348, 480, 641, 728, 737
BstSLI GKGCMC 1 cut(s) 86
BstV1I GCAGC 2 cut(s) 375, 519
BsuRI GGCC 1 cut(s) 579
BtgI CCRYGG 1 cut(s) 102
Cac8I GCNNGC 1 cut(s) 298
CaiI CAGNNNCTG 1 cut(s) 557
Cfr13I GGNCC 2 cut(s) 107, 289
CspCI CAANNNNNGTGG 2 cut(s) 569, 604
CviAII CATG 4 cut(s) 103, 286, 475, 484
CviJI RGCY 9 cut(s) 53, 143, 416, 510, 579, 644, 722, 731, 740
CviKI_1 RGCY 9 cut(s) 53, 143, 416, 510, 579, 644, 722, 731, 740
DdeI CTNAG 3 cut(s) 393, 530, 619
DpnI GATC 1 cut(s) 278
DpnII GATC 1 cut(s) 276
DriI GACNNNNNGTC 1 cut(s) 323
EaeI YGGCCR 1 cut(s) 577
Eam1104I CTCTTC 1 cut(s) 473
Eam1105I GACNNNNNGTC 1 cut(s) 323
EarI CTCTTC 1 cut(s) 473
Eco130I CCWWGG 2 cut(s) 102, 227
Eco47I GGWCC 2 cut(s) 107, 289
EcoO109I RGGNCCY 1 cut(s) 107
EcoT14I CCWWGG 2 cut(s) 102, 227
EcoT22I ATGCAT 1 cut(s) 637
ErhI CCWWGG 2 cut(s) 102, 227
FaeI CATG 4 cut(s) 106, 289, 478, 487
FaqI GGGAC 2 cut(s) 93, 502
FatI CATG 4 cut(s) 102, 285, 474, 483
Fnu4HI GCNGC 2 cut(s) 389, 508
Fsp4HI GCNGC 2 cut(s) 389, 508
FspBI CTAG 4 cut(s) 92, 164, 228, 504
GluI GCNGC 2 cut(s) 389, 508
HaeIII GGCC 1 cut(s) 579
Hin1II CATG 4 cut(s) 106, 289, 478, 487
HincII GTYRAC 1 cut(s) 709
HindII GTYRAC 1 cut(s) 709
HindIII AAGCTT 1 cut(s) 738
HinfI GANTC 2 cut(s) 10, 234
HphI GGTGA 1 cut(s) 16
Hpy166II GTNNAC 1 cut(s) 709
Hpy188I TCNGA 4 cut(s) 140, 546, 559, 718
Hpy188III TCNNGA 2 cut(s) 92, 428
Hpy8I GTNNAC 1 cut(s) 709
Hpy99I CGWCG 1 cut(s) 329
HpyAV CCTTC 2 cut(s) 48, 154
HpyCH4III ACNGT 1 cut(s) 553
HpyCH4V TGCA 6 cut(s) 131, 274, 437, 515, 635, 686
HpyF10VI GCNNNNNNNGC 5 cut(s) 348, 480, 641, 728, 737
HpyF3I CTNAG 3 cut(s) 393, 530, 619
Hsp92II CATG 4 cut(s) 106, 289, 478, 487
KflI GGGWCCC 1 cut(s) 107
Kzo9I GATC 1 cut(s) 276
LguI GCTCTTC 1 cut(s) 473
LmnI GCTCC 2 cut(s) 140, 249
LpnPI CCDG 5 cut(s) 27, 65, 141, 413, 630
Lsp1109I GCAGC 2 cut(s) 375, 519
LweI GCATC 3 cut(s) 85, 140, 409
MaeI CTAG 4 cut(s) 92, 164, 228, 504
MaeIII GTNAC 2 cut(s) 148, 166
MalI GATC 1 cut(s) 278
MboI GATC 1 cut(s) 276
MboII GAAGA 4 cut(s) 16, 442, 490, 533
MhlI GDGCHC 1 cut(s) 86
MlsI TGGCCA 1 cut(s) 579
MluCI AATT 2 cut(s) 601, 661
MluNI TGGCCA 1 cut(s) 579
MmeI TCCRAC 1 cut(s) 224
MnlI CCTC 4 cut(s) 182, 380, 402, 539
Mox20I TGGCCA 1 cut(s) 579
Mph1103I ATGCAT 1 cut(s) 637
MscI TGGCCA 1 cut(s) 579
MseI TTAA 1 cut(s) 660
Msp20I TGGCCA 1 cut(s) 579
MwoI GCNNNNNNNGC 5 cut(s) 348, 480, 641, 728, 737
NcoI CCATGG 1 cut(s) 102
NdeII GATC 1 cut(s) 276
NlaIII CATG 4 cut(s) 106, 289, 478, 487
NlaIV GGNNCC 5 cut(s) 85, 108, 109, 142, 198
NsiI ATGCAT 1 cut(s) 637
PciSI GCTCTTC 1 cut(s) 473
PcsI WCGNNNNNNNCGW 1 cut(s) 144
PfeI GAWTC 2 cut(s) 10, 234
PflMI CCANNNNNTGG 1 cut(s) 253
PkrI GCNGC 2 cut(s) 390, 509
PpuMI RGGWCCY 1 cut(s) 107
PsiI TTATAA 1 cut(s) 702
Psp5II RGGWCCY 1 cut(s) 107
PspN4I GGNNCC 5 cut(s) 85, 108, 109, 142, 198
PspPI GGNCC 2 cut(s) 107, 289
PspPPI RGGWCCY 1 cut(s) 107
PstNI CAGNNNCTG 1 cut(s) 557
SapI GCTCTTC 1 cut(s) 473
SaqAI TTAA 1 cut(s) 660
SatI GCNGC 2 cut(s) 389, 508
Sau3AI GATC 1 cut(s) 276
Sau96I GGNCC 2 cut(s) 107, 289
SduI GDGCHC 1 cut(s) 86
SetI ASST 5 cut(s) 55, 512, 589, 733, 742
SfaNI GCATC 3 cut(s) 85, 140, 409
SinI GGWCC 2 cut(s) 107, 289
Sse9I AATT 2 cut(s) 601, 661
SsiI CCGC 1 cut(s) 187
SspI AATATT 1 cut(s) 378
SspMI CTAG 4 cut(s) 92, 164, 228, 504
StyI CCWWGG 2 cut(s) 102, 227
TaaI ACNGT 1 cut(s) 553
TasI AATT 2 cut(s) 601, 661
TfiI GAWTC 2 cut(s) 10, 234
Tru1I TTAA 1 cut(s) 660
Tru9I TTAA 1 cut(s) 660
TseI GCWGC 2 cut(s) 388, 507
TspDTI ATGAA 4 cut(s) 17, 22, 61, 491
TspGWI ACGGA 1 cut(s) 223
Van91I CCANNNNNTGG 1 cut(s) 253
VpaK11BI GGWCC 2 cut(s) 107, 289
XbaI TCTAGA 1 cut(s) 91
XcmI CCANNNNNNNNNTGG 1 cut(s) 730
XmaJI CCTAGG 1 cut(s) 227
XspI CTAG 4 cut(s) 92, 164, 228, 504
Zsp2I ATGCAT 1 cut(s) 637
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.