Rh6CG310900

Peptide transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0017245
Physical Location & Seq
Forward (+)
49551896 .. 49554723
2828 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG310900.1

Sequence Viewer

Length: 1407 bp
ATGTCACTACTAACCCTAGCAGTATCAGTGCCAGCTCTGAGACCACCATCTTGCGGCCCTGGAATCAAGGACGAGGACTGCACATTAAGAGCTTCGCCATTCCAAGTAGGGATTTTCTATTGTGCATTGTACATGATAGCGGTTGGAATTGGTGGAACAAAACCCAATATCTCAACCATGGGGGCAGACCAATTTGACAGTTTTGAGCCAAAGGAGAAGCATCAGAAGCTCTCCTTCTTTAATTGGTGGATGTTTTGCATAGCCTTTGGTAACTTCTTTTCTTACACTTTCTTGGTGTACATACAAGACAACGTCGGTTGGTCGCTTGGCTATGGGCTCCCAACAATAGGGCTTGTGATCTCAGTGTTGGTGTTCTTGGTTGGTACCCCATTTTACAGGCACAAAATGCCTTCAGGGAGTCCTCTAACAAGGGTTGCTCAGGTACTGGTTGCAGCTGTTAGGAAGTGGAAAGTGAATATCCCAAATGACCCCAAAGAGCTTCATGATCAACCAAGCTTGGATGAACATGCAGACAAAATGAAACACAGAATTGACCACACCTCCTCATTAAGATTCCTTGACAGAGCTGCAGTAAAAAGTACCAGGCCAAGTACACCATGGACTCTTTGTCCGGTGACCCAAGTAGAAGAAACCAAGCAAATGATGAAGATGATTCCAGTTTTACTCACCACATTCATTCCTTCCATTATCATAGCTCAAACCCACACCCTTTTCATAAAGCAGGGCACCACTCTAGATGCTTCCATGGGTCCCCATTTCAAAATCCCCCCTGCATCTTTCGGAGCCTTCGTAACCATTTTCGTCCTAGTAACCCTCGCAATCTATGACCGCTACTTGGTTCCAACACTACGGACTTACACCCAAAACCCTAGGGGAATCACATTGCTCCAAAGAATGGGAATAGGGTATGTGGTGCAGATCGTAATCATGGTCCTTGCTTGCTTGGTTGAGAAAAAACGACTTCTCGTCGCAAGGGAAAACGGCATTGTTGGCAAAGGAGAGAAAGTTCCCCTCACAATATTTATTCTGCTGCCTCAGTTTGCTCTTATGGGTGTGGCTGATGCGTTTCTGGAAGTTGCAAAGATAGAGTTCTTCTACGACCAAGCACCACAAGGCATGAAGAGCATGGGGACATCATATTATACTAGCAGCTATGCAGTTGGGAGTTTCCTCAGTAGTTTTCTTCTGAAAACAGTTTCTGATATGACCAAGACAGATGGCCACAAAGGTTGGGTCTTGGACAATTTGAATGTATCACGCTTAGACTACTACTATGCATTGTTGGCTGGTTTGGTATTTCTTAATTTCTTATTATTTTTGGTTGTTGCAAAGTCTTTTGCTTATAATGTTGACATCTCGGAAGCCAAGATAGCTGTGGAAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PTR2

Protein Analysis

468

Amino Acids

52.13

Weight (kDa)

9.07

Isoelectric Point (pI)

35.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PTR2 PF00854 1 - 419 2.3e-96 POT family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017245)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g20840
prunus_persica Prupe.8G218300_v2.0.a1 Prupe.8G218300_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0287231
rosa_laevigata RLG00000012516
rosa_multiflora Rmu_sc0005297.1_g000025
rosa_roxburghii Rroxscaffold_7G00181650
rosa_rugosa Rorug06G0185900 Rorug06G0186000
rosa_samantha Rh6BG302900 Rh6CG310900 Rh6DG294600
rosa_wichuraiana Rw6G025700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1365
Acc65I GGTACC 1 cut(s) 383
AccB1I GGYRCC 2 cut(s) 383, 746
AccB7I CCANNNNNTGG 1 cut(s) 916
AciI CCGC 3 cut(s) 54, 140, 850
AcoI YGGCCR 1 cut(s) 1240
AcuI CTGAAG 1 cut(s) 396
AfaI GTAC 6 cut(s) 131, 299, 385, 444, 601, 613
AfiI CCNNNNNNNGG 4 cut(s) 53, 347, 856, 916
AgsI TTSAA 2 cut(s) 781, 1270
AhdI GACNNNNNGTC 2 cut(s) 627, 986
AjnI CCWGG 2 cut(s) 58, 602
AloI GAACNNNNNNTCC 2 cut(s) 1011, 1043
Alw26I GTCTC 1 cut(s) 34
AlwNI CAGNNNCTG 2 cut(s) 445, 1220
AoxI GGCC 3 cut(s) 55, 605, 1240
ApeKI GCWGC 4 cut(s) 452, 587, 1051, 1170
ArsI GACNNNNNNTTYG 2 cut(s) 1239, 1271
Asp718I GGTACC 1 cut(s) 383
AspA2I CCTAGG 1 cut(s) 890
AspS9I GGNCC 3 cut(s) 56, 770, 952
AsuHPI GGTGA 2 cut(s) 646, 679
AvaII GGWCC 2 cut(s) 770, 952
AvrII CCTAGG 1 cut(s) 890
BaeGI GKGCMC 1 cut(s) 749
BalI TGGCCA 1 cut(s) 1242
BanI GGYRCC 2 cut(s) 383, 746
BanII GRGCYC 1 cut(s) 339
BbvI GCAGC 4 cut(s) 464, 574, 1038, 1182
BccI CCATC 2 cut(s) 55, 1232
BceAI ACGGC 1 cut(s) 1018
BciT130I CCWGG 2 cut(s) 60, 604
BclI TGATCA 1 cut(s) 505
BcoDI GTCTC 1 cut(s) 34
BfaI CTAG 5 cut(s) 17, 755, 827, 891, 1167
BfmI CTRYAG 1 cut(s) 588
BisI GCNGC 5 cut(s) 55, 453, 588, 1052, 1171
BlnI CCTAGG 1 cut(s) 890
BlsI GCNGC 5 cut(s) 56, 454, 589, 1053, 1172
Bme1390I CCNGG 2 cut(s) 60, 604
Bme18I GGWCC 2 cut(s) 770, 952
BmeRI GACNNNNNGTC 2 cut(s) 627, 986
BmgT120I GGNCC 3 cut(s) 56, 770, 952
BmiI GGNNCC 7 cut(s) 338, 385, 748, 771, 772, 805, 861
BmrFI CCNGG 2 cut(s) 60, 604
BmsI GCATC 4 cut(s) 229, 748, 803, 1072
Bpu10I CCTNAGC 1 cut(s) 438
BsaBI GATNNNNATC 1 cut(s) 944
BsaI GGTCTC 1 cut(s) 34
BsaJI CCNNGG 5 cut(s) 58, 177, 617, 765, 890
BsaWI WCCGGW 1 cut(s) 631
BsaXI ACNNNNNCTCC 6 cut(s) 545, 575, 795, 825, 1011, 1041
Bsc4I CCNNNNNNNGG 4 cut(s) 53, 347, 856, 916
Bse1I ACTGG 2 cut(s) 450, 677
Bse3DI GCAATG 1 cut(s) 902
Bse8I GATNNNNATC 1 cut(s) 944
BseBI CCWGG 2 cut(s) 60, 604
BseDI CCNNGG 5 cut(s) 58, 177, 617, 765, 890
BseGI GGATG 2 cut(s) 255, 526
BseJI GATNNNNATC 1 cut(s) 944
BseLI CCNNNNNNNGG 4 cut(s) 53, 347, 856, 916
BseMI GCAATG 1 cut(s) 902
BseMII CTCAG 5 cut(s) 29, 375, 452, 1070, 1207
BseNI ACTGG 2 cut(s) 450, 677
BseRI GAGGAG 1 cut(s) 553
BseSI GKGCMC 1 cut(s) 749
BseXI GCAGC 4 cut(s) 464, 574, 1038, 1182
BsgI GTGCAG 2 cut(s) 64, 956
BshFI GGCC 3 cut(s) 57, 607, 1242
BshNI GGYRCC 2 cut(s) 383, 746
BsiSI CCGG 1 cut(s) 632
BslFI GGGAC 2 cut(s) 756, 1165
BslI CCNNNNNNNGG 4 cut(s) 53, 347, 856, 916
BsmAI GTCTC 1 cut(s) 34
BsmFI GGGAC 2 cut(s) 756, 1165
BsnI GGCC 3 cut(s) 57, 607, 1242
Bso31I GGTCTC 1 cut(s) 34
Bsp1286I GDGCHC 2 cut(s) 339, 749
Bsp1407I TGTACA 2 cut(s) 129, 297
Bsp143I GATC 3 cut(s) 357, 505, 939
Bsp19I CCATGG 3 cut(s) 177, 617, 765
BspACI CCGC 3 cut(s) 54, 140, 850
BspANI GGCC 3 cut(s) 57, 607, 1242
BspCNI CTCAG 5 cut(s) 30, 374, 451, 1069, 1206
BspHI TCATGA 1 cut(s) 502
BspLI GGNNCC 7 cut(s) 338, 385, 748, 771, 772, 805, 861
BspMAI CTGCAG 1 cut(s) 592
BspQI GCTCTTC 1 cut(s) 1136
BspT107I GGYRCC 2 cut(s) 383, 746
BspTNI GGTCTC 1 cut(s) 34
BsrDI GCAATG 1 cut(s) 902
BsrGI TGTACA 2 cut(s) 129, 297
BsrI ACTGG 2 cut(s) 450, 677
BssECI CCNNGG 5 cut(s) 58, 177, 617, 765, 890
BssMI GATC 3 cut(s) 357, 505, 939
BssT1I CCWWGG 4 cut(s) 177, 617, 765, 890
Bst2UI CCWGG 2 cut(s) 60, 604
Bst4CI ACNGT 2 cut(s) 200, 1216
Bst6I CTCTTC 1 cut(s) 1136
BstAPI GCANNNNNTGC 1 cut(s) 406
BstAUI TGTACA 2 cut(s) 129, 297
BstC8I GCNNGC 2 cut(s) 33, 961
BstDEI CTNAG 6 cut(s) 38, 361, 438, 1056, 1193, 1282
BstDSI CCRYGG 3 cut(s) 177, 617, 765
BstEII GGTNACC 1 cut(s) 634
BstF5I GGATG 2 cut(s) 255, 526
BstKTI GATC 3 cut(s) 360, 508, 942
BstMAI GTCTC 1 cut(s) 34
BstMBI GATC 3 cut(s) 357, 505, 939
BstMWI GCNNNNNNNGC 7 cut(s) 226, 406, 1011, 1143, 1304, 1391, 1400
BstNI CCWGG 2 cut(s) 60, 604
BstNSI RCATGY 1 cut(s) 530
BstPI GGTNACC 1 cut(s) 634
BstSCI CCNGG 2 cut(s) 58, 602
BstSFI CTRYAG 1 cut(s) 588
BstSLI GKGCMC 1 cut(s) 749
BstV1I GCAGC 4 cut(s) 464, 574, 1038, 1182
BsuRI GGCC 3 cut(s) 57, 607, 1242
BtgI CCRYGG 3 cut(s) 177, 617, 765
BtsCI GGATG 2 cut(s) 255, 526
BtsIMutI CAGTG 2 cut(s) 33, 369
Cac8I GCNNGC 2 cut(s) 33, 961
CaiI CAGNNNCTG 2 cut(s) 445, 1220
CciI TCATGA 1 cut(s) 502
Cfr13I GGNCC 3 cut(s) 56, 770, 952
Csp6I GTAC 6 cut(s) 130, 298, 384, 443, 600, 612
CspCI CAANNNNNGTGG 2 cut(s) 1232, 1267
CviAII CATG 9 cut(s) 133, 178, 503, 527, 618, 766, 949, 1138, 1147
CviQI GTAC 6 cut(s) 130, 298, 384, 443, 600, 612
DdeI CTNAG 6 cut(s) 38, 361, 438, 1056, 1193, 1282
DpnI GATC 3 cut(s) 359, 507, 941
DpnII GATC 3 cut(s) 357, 505, 939
DriI GACNNNNNGTC 2 cut(s) 627, 986
EaeI YGGCCR 1 cut(s) 1240
Eam1104I CTCTTC 1 cut(s) 1136
Eam1105I GACNNNNNGTC 2 cut(s) 627, 986
EarI CTCTTC 1 cut(s) 1136
Eco130I CCWWGG 4 cut(s) 177, 617, 765, 890
Eco24I GRGCYC 1 cut(s) 339
Eco31I GGTCTC 1 cut(s) 34
Eco47I GGWCC 2 cut(s) 770, 952
Eco57I CTGAAG 1 cut(s) 396
Eco91I GGTNACC 1 cut(s) 634
EcoO109I RGGNCCY 1 cut(s) 770
EcoO65I GGTNACC 1 cut(s) 634
EcoRII CCWGG 2 cut(s) 58, 602
EcoT14I CCWWGG 4 cut(s) 177, 617, 765, 890
EcoT22I ATGCAT 1 cut(s) 1300
EcoT38I GRGCYC 1 cut(s) 339
ErhI CCWWGG 4 cut(s) 177, 617, 765, 890
FaeI CATG 9 cut(s) 136, 181, 506, 530, 621, 769, 952, 1141, 1150
FalI AAGNNNNNCTT 2 cut(s) 218, 250
FaqI GGGAC 2 cut(s) 756, 1165
FatI CATG 9 cut(s) 132, 177, 502, 526, 617, 765, 948, 1137, 1146
FbaI TGATCA 1 cut(s) 505
Fnu4HI GCNGC 5 cut(s) 55, 453, 588, 1052, 1171
FokI GGATG 2 cut(s) 262, 533
FriOI GRGCYC 1 cut(s) 339
Fsp4HI GCNGC 5 cut(s) 55, 453, 588, 1052, 1171
FspBI CTAG 5 cut(s) 17, 755, 827, 891, 1167
GluI GCNGC 5 cut(s) 55, 453, 588, 1052, 1171
HaeIII GGCC 3 cut(s) 57, 607, 1242
HapII CCGG 1 cut(s) 632
Hin1II CATG 9 cut(s) 136, 181, 506, 530, 621, 769, 952, 1141, 1150
HincII GTYRAC 1 cut(s) 1372
HindII GTYRAC 1 cut(s) 1372
HindIII AAGCTT 2 cut(s) 514, 1401
HinfI GANTC 6 cut(s) 63, 418, 573, 622, 673, 897
HpaII CCGG 1 cut(s) 632
HphI GGTGA 2 cut(s) 646, 679
Hpy166II GTNNAC 3 cut(s) 298, 614, 1372
Hpy188I TCNGA 6 cut(s) 39, 225, 803, 1209, 1222, 1381
Hpy188III TCNNGA 3 cut(s) 503, 755, 1091
Hpy8I GTNNAC 3 cut(s) 298, 614, 1372
Hpy99I CGWCG 2 cut(s) 317, 992
HpyAV CCTTC 4 cut(s) 244, 420, 711, 817
HpyCH4III ACNGT 2 cut(s) 200, 1216
HpyCH4IV ACGT 1 cut(s) 312
HpyF10VI GCNNNNNNNGC 7 cut(s) 226, 406, 1011, 1143, 1304, 1391, 1400
HpyF3I CTNAG 6 cut(s) 38, 361, 438, 1056, 1193, 1282
HpySE526I ACGT 1 cut(s) 312
Hsp92II CATG 9 cut(s) 136, 181, 506, 530, 621, 769, 952, 1141, 1150
KflI GGGWCCC 1 cut(s) 770
KpnI GGTACC 1 cut(s) 387
Ksp22I TGATCA 1 cut(s) 505
Kzo9I GATC 3 cut(s) 357, 505, 939
LguI GCTCTTC 1 cut(s) 1136
LmnI GCTCC 3 cut(s) 342, 803, 912
Lsp1109I GCAGC 4 cut(s) 464, 574, 1038, 1182
LweI GCATC 4 cut(s) 229, 748, 803, 1072
MaeI CTAG 5 cut(s) 17, 755, 827, 891, 1167
MaeII ACGT 1 cut(s) 312
MaeIII GTNAC 5 cut(s) 3, 269, 634, 811, 829
MalI GATC 3 cut(s) 359, 507, 941
MboI GATC 3 cut(s) 357, 505, 939
MboII GAAGA 5 cut(s) 659, 679, 1105, 1153, 1196
MhlI GDGCHC 2 cut(s) 339, 749
MlsI TGGCCA 1 cut(s) 1242
MluCI AATT 6 cut(s) 147, 191, 241, 549, 1264, 1324
MluNI TGGCCA 1 cut(s) 1242
MlyI GAGTC 2 cut(s) 427, 616
MmeI TCCRAC 2 cut(s) 124, 887
MnlI CCTC 8 cut(s) 67, 432, 571, 574, 845, 1043, 1065, 1202
Mox20I TGGCCA 1 cut(s) 1242
Mph1103I ATGCAT 1 cut(s) 1300
MscI TGGCCA 1 cut(s) 1242
MseI TTAA 4 cut(s) 86, 240, 569, 1323
Msp20I TGGCCA 1 cut(s) 1242
MspA1I CMGCKG 1 cut(s) 455
MspI CCGG 1 cut(s) 632
MspR9I CCNGG 2 cut(s) 60, 604
MvaI CCWGG 2 cut(s) 60, 604
MwoI GCNNNNNNNGC 7 cut(s) 226, 406, 1011, 1143, 1304, 1391, 1400
NcoI CCATGG 3 cut(s) 177, 617, 765
NdeII GATC 3 cut(s) 357, 505, 939
NlaIII CATG 9 cut(s) 136, 181, 506, 530, 621, 769, 952, 1141, 1150
NlaIV GGNNCC 7 cut(s) 338, 385, 748, 771, 772, 805, 861
NmuCI GTSAC 2 cut(s) 3, 634
NsiI ATGCAT 1 cut(s) 1300
NspI RCATGY 1 cut(s) 530
PagI TCATGA 1 cut(s) 502
PciSI GCTCTTC 1 cut(s) 1136
PcsI WCGNNNNNNNCGW 1 cut(s) 807
PfeI GAWTC 4 cut(s) 63, 573, 673, 897
PflFI GACNNNGTC 1 cut(s) 311
PflMI CCANNNNNTGG 1 cut(s) 916
PkrI GCNGC 5 cut(s) 56, 454, 589, 1053, 1172
PleI GAGTC 2 cut(s) 426, 616
PpsI GAGTC 2 cut(s) 426, 616
PpuMI RGGWCCY 1 cut(s) 770
PsiI TTATAA 1 cut(s) 1365
Psp5II RGGWCCY 1 cut(s) 770
Psp6I CCWGG 2 cut(s) 58, 602
PspEI GGTNACC 1 cut(s) 634
PspGI CCWGG 2 cut(s) 58, 602
PspN4I GGNNCC 7 cut(s) 338, 385, 748, 771, 772, 805, 861
PspPI GGNCC 3 cut(s) 56, 770, 952
PspPPI RGGWCCY 1 cut(s) 770
PstI CTGCAG 1 cut(s) 592
PstNI CAGNNNCTG 2 cut(s) 445, 1220
PsyI GACNNNGTC 1 cut(s) 311
PvuII CAGCTG 1 cut(s) 455
RsaI GTAC 6 cut(s) 131, 299, 385, 444, 601, 613
RsaNI GTAC 6 cut(s) 130, 298, 384, 443, 600, 612
SapI GCTCTTC 1 cut(s) 1136
SaqAI TTAA 4 cut(s) 86, 240, 569, 1323
SatI GCNGC 5 cut(s) 55, 453, 588, 1052, 1171
Sau3AI GATC 3 cut(s) 357, 505, 939
Sau96I GGNCC 3 cut(s) 56, 770, 952
SchI GAGTC 2 cut(s) 427, 616
ScrFI CCNGG 2 cut(s) 60, 604
SduI GDGCHC 2 cut(s) 339, 749
SfaNI GCATC 4 cut(s) 229, 748, 803, 1072
SfcI CTRYAG 1 cut(s) 588
SinI GGWCC 2 cut(s) 770, 952
Sse9I AATT 6 cut(s) 147, 191, 241, 549, 1264, 1324
SsiI CCGC 3 cut(s) 54, 140, 850
SspI AATATT 1 cut(s) 1041
SspMI CTAG 5 cut(s) 17, 755, 827, 891, 1167
StyD4I CCNGG 2 cut(s) 58, 602
StyI CCWWGG 4 cut(s) 177, 617, 765, 890
TaaI ACNGT 2 cut(s) 200, 1216
TaiI ACGT 1 cut(s) 315
TasI AATT 6 cut(s) 147, 191, 241, 549, 1264, 1324
TatI WGTACW 3 cut(s) 129, 297, 611
TauI GCSGC 1 cut(s) 57
TfiI GAWTC 4 cut(s) 63, 573, 673, 897
Tru1I TTAA 4 cut(s) 86, 240, 569, 1323
Tru9I TTAA 4 cut(s) 86, 240, 569, 1323
TscAI CASTG 2 cut(s) 33, 369
TseFI GTSAC 2 cut(s) 3, 634
TseI GCWGC 4 cut(s) 452, 587, 1051, 1170
Tsp45I GTSAC 2 cut(s) 3, 634
TspDTI ATGAA 7 cut(s) 491, 537, 554, 680, 685, 724, 1154
TspGWI ACGGA 1 cut(s) 886
TspRI CASTG 2 cut(s) 33, 369
Tth111I GACNNNGTC 1 cut(s) 311
Van91I CCANNNNNTGG 1 cut(s) 916
VpaK11BI GGWCC 2 cut(s) 770, 952
XbaI TCTAGA 1 cut(s) 754
XceI RCATGY 1 cut(s) 530
XcmI CCANNNNNNNNNTGG 2 cut(s) 615, 1393
XmaJI CCTAGG 1 cut(s) 890
XspI CTAG 5 cut(s) 17, 755, 827, 891, 1167
Zsp2I ATGCAT 1 cut(s) 1300
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.