Rorug06G0186000

Peptide transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0017245
Physical Location & Seq
Forward (+)
29443419 .. 29443766
348 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0186000.1

Sequence Viewer

Length: 348 bp
ATGTATGACGATGCAGGCTTTCAGAGGTGGTGCATGATGCAAAGACATGTATTCCAATGCATAATAGAGGACCTTTGCAGCCTCAATAGTTTTTTGGGGAAAAAACCAGATGCCACTGGAAAAATAGGTTTGCTTTTCGAACAAAAAATGACATGTGCCCTAAGAATGCTTGTGTACGGGACAGTTATTGATCAATGTGATGAAATCACTTTGATGGAGGCTTCTACAACGCTGAAAGCCTGCTTCGTAGACAAGTTTGGTATCTTTACCCGGGATGGTTCCTTTATCCTCCAAATCCCACTGACTTACGTAGTCTTCTCAACAGAGGACAACACAACGGTTTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PTR2

Protein Analysis

115

Amino Acids

13.12

Weight (kDa)

4.78

Isoelectric Point (pI)

36.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017245)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g20840
prunus_persica Prupe.8G218300_v2.0.a1 Prupe.8G218300_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0287231
rosa_laevigata RLG00000012516
rosa_multiflora Rmu_sc0005297.1_g000025
rosa_roxburghii Rroxscaffold_7G00181650
rosa_rugosa Rorug06G0185900 Rorug06G0186000
rosa_samantha Rh6BG302900 Rh6CG310900 Rh6DG294600
rosa_wichuraiana Rw6G025700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 249
AfaI GTAC 1 cut(s) 176
AflIII ACRYGT 2 cut(s) 46, 152
Ama87I CYCGRG 1 cut(s) 270
ApeKI GCWGC 1 cut(s) 78
AspS9I GGNCC 1 cut(s) 70
AsuC2I CCSGG 2 cut(s) 271, 272
AsuII TTCGAA 1 cut(s) 138
AvaI CYCGRG 1 cut(s) 270
AvaII GGWCC 1 cut(s) 70
BaeGI GKGCMC 1 cut(s) 160
BbsI GAAGAC 1 cut(s) 307
BbvI GCAGC 1 cut(s) 90
BccI CCATC 2 cut(s) 208, 269
BclI TGATCA 1 cut(s) 190
BcnI CCSGG 2 cut(s) 271, 272
BisI GCNGC 1 cut(s) 79
BlsI GCNGC 1 cut(s) 80
Bme1390I CCNGG 2 cut(s) 271, 272
Bme18I GGWCC 1 cut(s) 70
BmeT110I CYCGRG 1 cut(s) 270
BmgT120I GGNCC 1 cut(s) 70
BmiI GGNNCC 1 cut(s) 280
BmrFI CCNGG 2 cut(s) 271, 272
BmsI GCATC 2 cut(s) 27, 100
BpiI GAAGAC 1 cut(s) 307
Bpu14I TTCGAA 1 cut(s) 138
BpuMI CCSGG 2 cut(s) 271, 272
BsaAI YACGTR 1 cut(s) 310
BsaJI CCNNGG 1 cut(s) 270
Bse1I ACTGG 1 cut(s) 121
BseDI CCNNGG 1 cut(s) 270
BseGI GGATG 1 cut(s) 280
BseNI ACTGG 1 cut(s) 121
BseSI GKGCMC 1 cut(s) 160
BseXI GCAGC 1 cut(s) 90
BsiHKCI CYCGRG 1 cut(s) 270
BsiSI CCGG 1 cut(s) 271
BslFI GGGAC 1 cut(s) 193
BsmFI GGGAC 1 cut(s) 193
BsmI GAATGC 1 cut(s) 171
BsoBI CYCGRG 1 cut(s) 270
Bsp119I TTCGAA 1 cut(s) 138
Bsp1286I GDGCHC 1 cut(s) 160
Bsp143I GATC 1 cut(s) 190
BspLI GGNNCC 1 cut(s) 280
BspT104I TTCGAA 1 cut(s) 138
BsrI ACTGG 1 cut(s) 121
BssECI CCNNGG 1 cut(s) 270
BssMI GATC 1 cut(s) 190
Bst4CI ACNGT 2 cut(s) 184, 340
BstBAI YACGTR 1 cut(s) 310
BstBI TTCGAA 1 cut(s) 138
BstC8I GCNNGC 2 cut(s) 16, 241
BstDEI CTNAG 1 cut(s) 161
BstF5I GGATG 1 cut(s) 280
BstKTI GATC 1 cut(s) 193
BstMBI GATC 1 cut(s) 190
BstNSI RCATGY 2 cut(s) 50, 156
BstSCI CCNGG 2 cut(s) 269, 270
BstSLI GKGCMC 1 cut(s) 160
BstSNI TACGTA 1 cut(s) 310
BstV1I GCAGC 1 cut(s) 90
BstV2I GAAGAC 1 cut(s) 307
BtsCI GGATG 1 cut(s) 280
BtsIMutI CAGTG 2 cut(s) 114, 299
Cac8I GCNNGC 2 cut(s) 16, 241
Cfr13I GGNCC 1 cut(s) 70
Cfr9I CCCGGG 1 cut(s) 270
Csp6I GTAC 1 cut(s) 175
CviAII CATG 3 cut(s) 34, 47, 153
CviJI RGCY 4 cut(s) 18, 81, 221, 239
CviKI_1 RGCY 4 cut(s) 18, 81, 221, 239
CviQI GTAC 1 cut(s) 175
DdeI CTNAG 1 cut(s) 161
DpnI GATC 1 cut(s) 192
DpnII GATC 1 cut(s) 190
Eco105I TACGTA 1 cut(s) 310
Eco47I GGWCC 1 cut(s) 70
Eco88I CYCGRG 1 cut(s) 270
EcoO109I RGGNCCY 1 cut(s) 70
EcoT22I ATGCAT 1 cut(s) 62
FaeI CATG 3 cut(s) 37, 50, 156
FaiI YATR 5 cut(s) 6, 35, 48, 62, 154
FaqI GGGAC 1 cut(s) 193
FatI CATG 3 cut(s) 33, 46, 152
FbaI TGATCA 1 cut(s) 190
FblI GTMKAC 1 cut(s) 249
Fnu4HI GCNGC 1 cut(s) 79
FokI GGATG 1 cut(s) 287
Fsp4HI GCNGC 1 cut(s) 79
GluI GCNGC 1 cut(s) 79
HapII CCGG 1 cut(s) 271
Hin1II CATG 3 cut(s) 37, 50, 156
HpaII CCGG 1 cut(s) 271
Hpy166II GTNNAC 2 cut(s) 175, 250
Hpy188I TCNGA 1 cut(s) 24
Hpy8I GTNNAC 2 cut(s) 175, 250
HpyCH4III ACNGT 2 cut(s) 184, 340
HpyCH4IV ACGT 1 cut(s) 309
HpyCH4V TGCA 5 cut(s) 14, 33, 40, 60, 78
HpyF3I CTNAG 1 cut(s) 161
HpySE526I ACGT 1 cut(s) 309
Hsp92II CATG 3 cut(s) 37, 50, 156
Ksp22I TGATCA 1 cut(s) 190
Kzo9I GATC 1 cut(s) 190
LpnPI CCDG 4 cut(s) 102, 120, 253, 284
Lsp1109I GCAGC 1 cut(s) 90
LweI GCATC 2 cut(s) 27, 100
MaeII ACGT 1 cut(s) 309
MalI GATC 1 cut(s) 192
MboI GATC 1 cut(s) 190
MboII GAAGA 1 cut(s) 307
MhlI GDGCHC 1 cut(s) 160
MnlI CCTC 6 cut(s) 18, 61, 92, 211, 299, 319
Mph1103I ATGCAT 1 cut(s) 62
MslI CAYNNNNRTG 1 cut(s) 212
MspI CCGG 1 cut(s) 271
MspR9I CCNGG 2 cut(s) 271, 272
Mva1269I GAATGC 1 cut(s) 171
NciI CCSGG 2 cut(s) 271, 272
NdeII GATC 1 cut(s) 190
NlaIII CATG 3 cut(s) 37, 50, 156
NlaIV GGNNCC 1 cut(s) 280
NsiI ATGCAT 1 cut(s) 62
NspI RCATGY 2 cut(s) 50, 156
NspV TTCGAA 1 cut(s) 138
PciI ACATGT 2 cut(s) 46, 152
PctI GAATGC 1 cut(s) 171
PkrI GCNGC 1 cut(s) 80
Ppu21I YACGTR 1 cut(s) 310
PpuMI RGGWCCY 1 cut(s) 70
PscI ACATGT 2 cut(s) 46, 152
Psp5II RGGWCCY 1 cut(s) 70
PspN4I GGNNCC 1 cut(s) 280
PspPI GGNCC 1 cut(s) 70
PspPPI RGGWCCY 1 cut(s) 70
RsaI GTAC 1 cut(s) 176
RsaNI GTAC 1 cut(s) 175
RseI CAYNNNNRTG 1 cut(s) 212
SatI GCNGC 1 cut(s) 79
Sau3AI GATC 1 cut(s) 190
Sau96I GGNCC 1 cut(s) 70
ScrFI CCNGG 2 cut(s) 271, 272
SduI GDGCHC 1 cut(s) 160
SetI ASST 4 cut(s) 29, 75, 130, 312
SfaNI GCATC 2 cut(s) 27, 100
SfuI TTCGAA 1 cut(s) 138
SinI GGWCC 1 cut(s) 70
SmaI CCCGGG 1 cut(s) 272
SmiMI CAYNNNNRTG 1 cut(s) 212
SnaBI TACGTA 1 cut(s) 310
StyD4I CCNGG 2 cut(s) 269, 270
TaaI ACNGT 2 cut(s) 184, 340
TaiI ACGT 1 cut(s) 312
TaqI TCGA 1 cut(s) 138
TscAI CASTG 2 cut(s) 121, 306
TseI GCWGC 1 cut(s) 78
TspDTI ATGAA 1 cut(s) 216
TspMI CCCGGG 1 cut(s) 270
TspRI CASTG 2 cut(s) 121, 306
VpaK11BI GGWCC 1 cut(s) 70
XceI RCATGY 2 cut(s) 50, 156
XmaI CCCGGG 1 cut(s) 270
XmiI GTMKAC 1 cut(s) 249
Zsp2I ATGCAT 1 cut(s) 62
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.