Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0014664

Physical Location & Seq

Genomic Coordinates Reverse (-)

17916352 .. 17917332

Gene Structure 981 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g21550.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

ATGGAAATGGAGTCCTACTCTATCTTGCAATTCTCAAACCCTTCTCAATTCTCACCTGAATCCTCCTTCGGTAATTCGTCGCTGGATTCTTTCTCATGGGACGACGCTTTACTCGACACTTTCAACAACGATATGTTGAACTTTCCACCGTTTAACACAAATGATCAGCCCCAGGATGTGTTGCTGCTCGATGCTGTGGCTAAAGAACCAGCAATGGTGGAAGAAGAGACGAACTGGTTCGGTGGAGCTGTAAAGGAAGAGGAGGTCACTTCCGATTCGATTACCTTCGAAGGGTTCGAAGAGAAACCCCGAAAAGAGAAGTCGTACAGAGGCGTCAGGAGGAGGCCTTGGGGGAAATACGCAGCTGAAATAAGGGACTCGACGAGGCATGGCGTCAGGGTTTGGCTTGGAACGTTCGACAGTCCCGAGGCAGCTGCTTTGGCTTATGACCAAGCTGCATTTGCACTGAGAGGTCCTTTGGCTGTGCTCAATTTTCCGGTTGAAGTTGTGAGGGAGTCACTTCAAGAAATCAAGTGTAAATACGACGTGGGGTGCTCGCCGGTGGTGGCACTCAAGAGGAGGCACTCGATGAGAAGGAAGTCTGCGTGCAAAAAGAATAGTAATAACAAAGAGCAAGAAAAAGGCAAGAGCTCCATTTCTTTCAATATAGCAAAGAAGAGAACAACACAAGAGAACATCACAGCAGAATCGAATGTGGTGGTATTAGAGGATTTGGGTGCTGAATACTTGGAGGAACTATTGTACCAAAGCTCATGTGAAAGTGCTAGGCCTACTAAATTCTATTACTTAATCGCGCCTTATTCCTCTTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009507 GO:0009536 GO:0009719 GO:0009723 GO:0009725 GO:0009755 GO:0009873 GO:0009889 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0080090 GO:0140110 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 map04016 map04075

Pfam Domains

Protein Families

AP2

Protein Analysis

278

Amino Acids

31.35

Weight (kDa)

5.1

Isoelectric Point (pI)

69.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	108 - 158	6.4e-15	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014664)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g21550
malus_domestica	MD05G1198700.v1.1 MD10G1184800.v1.1
prunus_persica	Prupe.8G224600_v2.0.a1
pyrus_communis	pycom05g18500
rosa_chinensis	RchiOBHm_Chr6g0288231
rosa_laevigata	RLG00000012427
rosa_multiflora	Rmu_co8374589.1_g000001 Rmu_sc0004300.1_g000003 Rmu_sc0009830.1_g000005
rosa_roxburghii	Rroxscaffold_7G00180360
rosa_rugosa	Rorug06G0194800
rosa_samantha	Rh6AG305700 Rh6BG311500 Rh6CG319500 Rh6DG304700
rosa_wichuraiana	Rw6G026450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	815
AclI	AACGTT	1 cut(s)	413
AcsI	RAATTY	1 cut(s)	797
AcyI	GRCGYC	2 cut(s)	333, 393
AfaI	GTAC	2 cut(s)	326, 764
AfiI	CCNNNNNNNGG	1 cut(s)	291
AgsI	TTSAA	5 cut(s)	124, 139, 503, 524, 664
AjiI	CACGTC	1 cut(s)	547
AjnI	CCWGG	1 cut(s)	171
AluBI	AGCT	6 cut(s)	248, 365, 434, 455, 651, 771
AluI	AGCT	6 cut(s)	248, 365, 434, 455, 651, 771
Alw21I	GWGCWC	3 cut(s)	489, 557, 653
Alw26I	GTCTC	1 cut(s)	221
Ama87I	CYCGRG	1 cut(s)	425
AoxI	GGCC	2 cut(s)	344, 788
ApeKI	GCWGC	5 cut(s)	184, 362, 431, 434, 455
ApoI	RAATTY	1 cut(s)	797
Asp700I	GAANNNNTTC	1 cut(s)	236
AspLEI	GCGC	1 cut(s)	817
AspS9I	GGNCC	1 cut(s)	473
AsuHPI	GGTGA	1 cut(s)	45
AsuII	TTCGAA	2 cut(s)	288, 297
AvaI	CYCGRG	1 cut(s)	425
AvaII	GGWCC	1 cut(s)	473
BaeI	ACNNNNGTAYC	2 cut(s)	746, 779
BanII	GRGCYC	1 cut(s)	653
Bbv12I	GWGCWC	3 cut(s)	489, 557, 653
BbvI	GCAGC	5 cut(s)	171, 374, 421, 442, 443
BcgI	CGANNNNNNTGC	2 cut(s)	416, 450
BciT130I	CCWGG	1 cut(s)	173
BclI	TGATCA	1 cut(s)	163
BcoDI	GTCTC	1 cut(s)	221
BfaI	CTAG	1 cut(s)	786
BisI	GCNGC	5 cut(s)	185, 363, 432, 435, 456
BlsI	GCNGC	5 cut(s)	186, 364, 433, 436, 457
Bme1390I	CCNGG	1 cut(s)	173
Bme18I	GGWCC	1 cut(s)	473
BmeT110I	CYCGRG	1 cut(s)	425
BmgBI	CACGTC	1 cut(s)	547
BmgT120I	GGNCC	1 cut(s)	473
BmrFI	CCNGG	1 cut(s)	173
BmsI	GCATC	1 cut(s)	181
BplI	GAGNNNNNCTC	1 cut(s)	34
Bpu14I	TTCGAA	2 cut(s)	288, 297
BpuEI	CTTGAG	1 cut(s)	557
BsaHI	GRCGYC	2 cut(s)	333, 393
BsaJI	CCNNGG	3 cut(s)	171, 347, 426
BsaWI	WCCGGW	1 cut(s)	496
Bsc4I	CCNNNNNNNGG	1 cut(s)	291
Bse118I	RCCGGY	1 cut(s)	559
Bse1I	ACTGG	1 cut(s)	239
Bse3DI	GCAATG	1 cut(s)	219
BseBI	CCWGG	1 cut(s)	173
BseDI	CCNNGG	3 cut(s)	171, 347, 426
BseGI	GGATG	1 cut(s)	181
BseLI	CCNNNNNNNGG	1 cut(s)	291
BseMI	GCAATG	1 cut(s)	219
BseMII	CTCAG	1 cut(s)	458
BseNI	ACTGG	1 cut(s)	239
BseRI	GAGGAG	3 cut(s)	275, 355, 592
BseXI	GCAGC	5 cut(s)	171, 374, 421, 442, 443
Bsh1236I	CGCG	1 cut(s)	815
BshFI	GGCC	2 cut(s)	346, 790
BsiHKAI	GWGCWC	3 cut(s)	489, 557, 653
BsiHKCI	CYCGRG	1 cut(s)	425
BsiSI	CCGG	2 cut(s)	497, 560
BslFI	GGGAC	3 cut(s)	113, 389, 408
BslI	CCNNNNNNNGG	1 cut(s)	291
BsmAI	GTCTC	1 cut(s)	221
BsmBI	CGTCTC	1 cut(s)	221
BsmFI	GGGAC	3 cut(s)	113, 389, 408
BsnI	GGCC	2 cut(s)	346, 790
BsoBI	CYCGRG	1 cut(s)	425
Bsp119I	TTCGAA	2 cut(s)	288, 297
Bsp1286I	GDGCHC	3 cut(s)	489, 557, 653
Bsp143I	GATC	1 cut(s)	163
BspANI	GGCC	2 cut(s)	346, 790
BspCNI	CTCAG	1 cut(s)	459
BspFNI	CGCG	1 cut(s)	815
BspT104I	TTCGAA	2 cut(s)	288, 297
BsrDI	GCAATG	1 cut(s)	219
BsrFI	RCCGGY	1 cut(s)	559
BsrI	ACTGG	1 cut(s)	239
BssAI	RCCGGY	1 cut(s)	559
BssECI	CCNNGG	3 cut(s)	171, 347, 426
BssMI	GATC	1 cut(s)	163
BssNI	GRCGYC	2 cut(s)	333, 393
BssT1I	CCWWGG	1 cut(s)	347
Bst2UI	CCWGG	1 cut(s)	173
Bst4CI	ACNGT	2 cut(s)	150, 422
Bst6I	CTCTTC	4 cut(s)	219, 252, 294, 671
BstACI	GRCGYC	2 cut(s)	333, 393
BstBI	TTCGAA	2 cut(s)	288, 297
BstC8I	GCNNGC	2 cut(s)	557, 607
BstDEI	CTNAG	1 cut(s)	467
BstF5I	GGATG	1 cut(s)	181
BstFNI	CGCG	1 cut(s)	815
BstHHI	GCGC	1 cut(s)	817
BstKTI	GATC	1 cut(s)	166
BstMAI	GTCTC	1 cut(s)	221
BstMBI	GATC	1 cut(s)	163
BstMWI	GCNNNNNNNGC	2 cut(s)	440, 461
BstNI	CCWGG	1 cut(s)	173
BstSCI	CCNGG	1 cut(s)	171
BstUI	CGCG	1 cut(s)	815
BstV1I	GCAGC	5 cut(s)	171, 374, 421, 442, 443
BsuRI	GGCC	2 cut(s)	346, 790
BtrI	CACGTC	1 cut(s)	547
BtsCI	GGATG	1 cut(s)	181
BtsIMutI	CAGTG	1 cut(s)	464
Cac8I	GCNNGC	2 cut(s)	557, 607
CfoI	GCGC	1 cut(s)	817
Cfr10I	RCCGGY	1 cut(s)	559
Cfr13I	GGNCC	1 cut(s)	473
CseI	GACGC	3 cut(s)	113, 322, 382
Csp6I	GTAC	2 cut(s)	325, 763
CviAII	CATG	3 cut(s)	96, 389, 774
CviQI	GTAC	2 cut(s)	325, 763
DdeI	CTNAG	1 cut(s)	467
DpnI	GATC	1 cut(s)	165
DpnII	GATC	1 cut(s)	163
Eam1104I	CTCTTC	4 cut(s)	219, 252, 294, 671
EarI	CTCTTC	4 cut(s)	219, 252, 294, 671
Ecl136II	GAGCTC	1 cut(s)	651
Eco130I	CCWWGG	1 cut(s)	347
Eco147I	AGGCCT	2 cut(s)	346, 790
Eco24I	GRGCYC	1 cut(s)	653
Eco47I	GGWCC	1 cut(s)	473
Eco53kI	GAGCTC	1 cut(s)	651
Eco88I	CYCGRG	1 cut(s)	425
EcoICRI	GAGCTC	1 cut(s)	651
EcoO109I	RGGNCCY	1 cut(s)	473
EcoRII	CCWGG	1 cut(s)	171
EcoT14I	CCWWGG	1 cut(s)	347
EcoT38I	GRGCYC	1 cut(s)	653
ErhI	CCWWGG	1 cut(s)	347
Esp3I	CGTCTC	1 cut(s)	221
FaeI	CATG	3 cut(s)	99, 392, 777
FaiI	YATR	6 cut(s)	97, 134, 390, 447, 668, 775
FaqI	GGGAC	3 cut(s)	113, 389, 408
FatI	CATG	3 cut(s)	95, 388, 773
FbaI	TGATCA	1 cut(s)	163
Fnu4HI	GCNGC	5 cut(s)	185, 363, 432, 435, 456
FokI	GGATG	1 cut(s)	188
FriOI	GRGCYC	1 cut(s)	653
Fsp4HI	GCNGC	5 cut(s)	185, 363, 432, 435, 456
FspBI	CTAG	1 cut(s)	786
GlaI	GCGC	1 cut(s)	816
GluI	GCNGC	5 cut(s)	185, 363, 432, 435, 456
HaeIII	GGCC	2 cut(s)	346, 790
HapII	CCGG	2 cut(s)	497, 560
HgaI	GACGC	3 cut(s)	113, 322, 382
HhaI	GCGC	1 cut(s)	817
Hin1I	GRCGYC	2 cut(s)	333, 393
Hin1II	CATG	3 cut(s)	99, 392, 777
Hin6I	GCGC	1 cut(s)	815
HinP1I	GCGC	1 cut(s)	815
HinfI	GANTC	7 cut(s)	11, 59, 86, 275, 377, 515, 707
HpaII	CCGG	2 cut(s)	497, 560
HphI	GGTGA	1 cut(s)	45
Hpy188I	TCNGA	1 cut(s)	274
Hpy188III	TCNNGA	4 cut(s)	337, 425, 524, 574
Hpy99I	CGWCG	4 cut(s)	82, 107, 385, 548
HpyAV	CCTTC	5 cut(s)	51, 76, 284, 295, 588
HpyCH4III	ACNGT	2 cut(s)	150, 422
HpyCH4IV	ACGT	2 cut(s)	413, 546
HpyCH4V	TGCA	4 cut(s)	28, 458, 464, 609
HpyF10VI	GCNNNNNNNGC	2 cut(s)	440, 461
HpyF3I	CTNAG	1 cut(s)	467
HpySE526I	ACGT	2 cut(s)	413, 546
Hsp92I	GRCGYC	2 cut(s)	333, 393
Hsp92II	CATG	3 cut(s)	99, 392, 777
HspAI	GCGC	1 cut(s)	815
Ksp22I	TGATCA	1 cut(s)	163
Kzo9I	GATC	1 cut(s)	163
LmnI	GCTCC	2 cut(s)	245, 656
Lsp1109I	GCAGC	5 cut(s)	171, 374, 421, 442, 443
LweI	GCATC	1 cut(s)	181
MaeI	CTAG	1 cut(s)	786
MaeII	ACGT	2 cut(s)	413, 546
MaeIII	GTNAC	2 cut(s)	265, 516
MalI	GATC	1 cut(s)	165
MboI	GATC	1 cut(s)	163
MboII	GAAGA	5 cut(s)	233, 236, 269, 311, 688
MhlI	GDGCHC	3 cut(s)	489, 557, 653
MluCI	AATT	5 cut(s)	29, 47, 73, 490, 797
MlyI	GAGTC	3 cut(s)	20, 371, 524
MroXI	GAANNNNTTC	1 cut(s)	236
MseI	TTAA	2 cut(s)	153, 809
MspA1I	CMGCKG	2 cut(s)	365, 434
MspI	CCGG	2 cut(s)	497, 560
MspR9I	CCNGG	1 cut(s)	173
MvaI	CCWGG	1 cut(s)	173
MvnI	CGCG	1 cut(s)	815
MwoI	GCNNNNNNNGC	2 cut(s)	440, 461
NdeII	GATC	1 cut(s)	163
NlaIII	CATG	3 cut(s)	99, 392, 777
NmuCI	GTSAC	2 cut(s)	265, 516
NspV	TTCGAA	2 cut(s)	288, 297
PceI	AGGCCT	2 cut(s)	346, 790
PcsI	WCGNNNNNNNCGW	3 cut(s)	111, 294, 423
PdmI	GAANNNNTTC	1 cut(s)	236
PfeI	GAWTC	4 cut(s)	59, 86, 275, 707
PkrI	GCNGC	5 cut(s)	186, 364, 433, 436, 457
PleI	GAGTC	3 cut(s)	19, 371, 523
PpsI	GAGTC	3 cut(s)	19, 371, 523
PpuMI	RGGWCCY	1 cut(s)	473
Psp124BI	GAGCTC	1 cut(s)	653
Psp1406I	AACGTT	1 cut(s)	413
Psp5II	RGGWCCY	1 cut(s)	473
Psp6I	CCWGG	1 cut(s)	171
PspGI	CCWGG	1 cut(s)	171
PspPI	GGNCC	1 cut(s)	473
PspPPI	RGGWCCY	1 cut(s)	473
PvuII	CAGCTG	2 cut(s)	365, 434
RsaI	GTAC	2 cut(s)	326, 764
RsaNI	GTAC	2 cut(s)	325, 763
SacI	GAGCTC	1 cut(s)	653
SaqAI	TTAA	2 cut(s)	153, 809
SatI	GCNGC	5 cut(s)	185, 363, 432, 435, 456
Sau3AI	GATC	1 cut(s)	163
Sau96I	GGNCC	1 cut(s)	473
SchI	GAGTC	3 cut(s)	20, 371, 524
ScrFI	CCNGG	1 cut(s)	173
SduI	GDGCHC	3 cut(s)	489, 557, 653
SfaNI	GCATC	1 cut(s)	181
SfuI	TTCGAA	2 cut(s)	288, 297
SgrAI	CRCCGGYG	1 cut(s)	559
SinI	GGWCC	1 cut(s)	473
SmlI	CTYRAG	1 cut(s)	572
SmoI	CTYRAG	1 cut(s)	572
Sse9I	AATT	5 cut(s)	29, 47, 73, 490, 797
SseBI	AGGCCT	2 cut(s)	346, 790
SspMI	CTAG	1 cut(s)	786
SstI	GAGCTC	1 cut(s)	653
StuI	AGGCCT	2 cut(s)	346, 790
StyD4I	CCNGG	1 cut(s)	171
StyI	CCWWGG	1 cut(s)	347
TaaI	ACNGT	2 cut(s)	150, 422
TaiI	ACGT	2 cut(s)	416, 549
TaqI	TCGA	9 cut(s)	114, 189, 278, 288, 297, 380, 417, 587, 710
TasI	AATT	5 cut(s)	29, 47, 73, 490, 797
TfiI	GAWTC	4 cut(s)	59, 86, 275, 707
Tru1I	TTAA	2 cut(s)	153, 809
Tru9I	TTAA	2 cut(s)	153, 809
TscAI	CASTG	1 cut(s)	471
TseFI	GTSAC	2 cut(s)	265, 516
TseI	GCWGC	5 cut(s)	184, 362, 431, 434, 455
Tsp45I	GTSAC	2 cut(s)	265, 516
TspRI	CASTG	1 cut(s)	471
VpaK11BI	GGWCC	1 cut(s)	473
XapI	RAATTY	1 cut(s)	797
XmnI	GAANNNNTTC	1 cut(s)	236
XspI	CTAG	1 cut(s)	786

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.