Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0014664

Physical Location & Seq

Genomic Coordinates Reverse (-)

27807139 .. 27807897

Gene Structure 759 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1184800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGGAAATGGAGTCTGCTTTCTTCCAATTTTCAAGTCCAGACTTCTCATCAGATTCCTCCTTTGGTTCATTACACTCCTTTTCATGGGGTGATGAATCACTACTACTTCCTTTCAATAGCCATCAGTTGATGAATTTTCCACCATTCAACATCGACGACTCCCAAGACATGTTGCTCTACGATGTGGTGGCCAAAGGCGCAAAACAGACATTAGTTGCACAGAACGAGGCGAATAGCTTCAGTGGGGTTAAAGAAGAGGAGGTGACTTCAGCCAACAACCAAACCCTAGAAGAAAATTCCACAAAAGAAAAGGCTTATAGAGGGGTGAGGAGAAGGCCTTGGGGAAAATATGCAGCAGAAATAAGAGACTCCACAAGGCATGGGATTAGGGTTTGGCTCGGCACGTTCGATAGTGCAGAGGCAGCTGCTTTAGCTTATGACCAAGCTGCATTTGCACTGAGAGGTTCTTTGGCTGTGCTTAATTTTCCAGCACAAGTTGTCCAAGAGTCTCTTCAAGAAATTAAGTATAGACACGATGAAGCGTGCTCGCCTGTTATTGCACTCAAGAGGAGGCACTCCATGAAAAGAAAGTCGATGCACAAAAAGAGTAATAAACCAGTTAGCCAACGTACGGATCAAAGAAAAGTACAGGAGGTTTTCCCACAAAATGTGATGGTATTAGAGGATTTGGGCGTTGAGTATTTGGAAGAACTTTTGGACATAAGCTCATGTGGAAGTAATAACTGGAGTCCGCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009507 GO:0009536 GO:0009719 GO:0009723 GO:0009725 GO:0009755 GO:0009873 GO:0009889 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0080090 GO:0140110 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 map04016 map04075

Pfam Domains

Protein Families

AP2

Protein Analysis

253

Amino Acids

28.48

Weight (kDa)

5.59

Isoelectric Point (pI)

63.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	105 - 155	1.8e-14	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0014664)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g21550
malus_domestica	MD05G1198700.v1.1 MD10G1184800.v1.1
prunus_persica	Prupe.8G224600_v2.0.a1
pyrus_communis	pycom05g18500
rosa_chinensis	RchiOBHm_Chr6g0288231
rosa_laevigata	RLG00000012427
rosa_multiflora	Rmu_co8374589.1_g000001 Rmu_sc0004300.1_g000003 Rmu_sc0009830.1_g000005
rosa_roxburghii	Rroxscaffold_7G00180360
rosa_rugosa	Rorug06G0194800
rosa_samantha	Rh6AG305700 Rh6BG311500 Rh6CG319500 Rh6DG304700
rosa_wichuraiana	Rw6G026450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	752
AclWI	GGATC	1 cut(s)	642
AcoI	YGGCCR	1 cut(s)	189
AcsI	RAATTY	2 cut(s)	133, 295
AcuI	CTGAAG	2 cut(s)	223, 252
AfaI	GTAC	2 cut(s)	631, 648
AfiI	CCNNNNNNNGG	2 cut(s)	84, 631
AflIII	ACRYGT	1 cut(s)	168
AgsI	TTSAA	4 cut(s)	33, 115, 148, 515
AjuI	GAANNNNNNNTTGG	2 cut(s)	495, 527
AluBI	AGCT	5 cut(s)	237, 425, 434, 446, 726
AluI	AGCT	5 cut(s)	237, 425, 434, 446, 726
Alw21I	GWGCWC	1 cut(s)	548
Alw26I	GTCTC	2 cut(s)	360, 513
AlwI	GGATC	1 cut(s)	642
AoxI	GGCC	2 cut(s)	189, 335
ApeKI	GCWGC	4 cut(s)	353, 422, 425, 446
ApoI	RAATTY	2 cut(s)	133, 295
Asp700I	GAANNNNTTC	1 cut(s)	236
AspLEI	GCGC	1 cut(s)	200
AsuHPI	GGTGA	3 cut(s)	101, 274, 337
BalI	TGGCCA	1 cut(s)	191
Bbv12I	GWGCWC	1 cut(s)	548
BbvI	GCAGC	4 cut(s)	365, 412, 433, 434
BccI	CCATC	2 cut(s)	129, 667
BcoDI	GTCTC	2 cut(s)	360, 513
BfaI	CTAG	1 cut(s)	287
BisI	GCNGC	4 cut(s)	354, 423, 426, 447
BlsI	GCNGC	4 cut(s)	355, 424, 427, 448
BmsI	GCATC	1 cut(s)	585
BpuEI	CTTGAG	1 cut(s)	548
BsaJI	CCNNGG	1 cut(s)	338
Bsc4I	CCNNNNNNNGG	2 cut(s)	84, 631
Bse1I	ACTGG	2 cut(s)	617, 749
BseDI	CCNNGG	1 cut(s)	338
BseLI	CCNNNNNNNGG	2 cut(s)	84, 631
BseMII	CTCAG	1 cut(s)	449
BseNI	ACTGG	2 cut(s)	617, 749
BseRI	GAGGAG	3 cut(s)	272, 343, 583
BseXI	GCAGC	4 cut(s)	365, 412, 433, 434
BsgI	GTGCAG	1 cut(s)	435
BshFI	GGCC	2 cut(s)	191, 337
BsiHKAI	GWGCWC	1 cut(s)	548
BsiWI	CGTACG	1 cut(s)	629
BslI	CCNNNNNNNGG	2 cut(s)	84, 631
BsmAI	GTCTC	2 cut(s)	360, 513
BsnI	GGCC	2 cut(s)	191, 337
Bsp1286I	GDGCHC	1 cut(s)	548
Bsp143I	GATC	1 cut(s)	634
BspACI	CCGC	1 cut(s)	752
BspANI	GGCC	2 cut(s)	191, 337
BspCNI	CTCAG	1 cut(s)	450
BspPI	GGATC	1 cut(s)	642
BsrI	ACTGG	2 cut(s)	617, 749
BssECI	CCNNGG	1 cut(s)	338
BssMI	GATC	1 cut(s)	634
BssT1I	CCWWGG	1 cut(s)	338
Bst6I	CTCTTC	2 cut(s)	249, 516
BstC8I	GCNNGC	2 cut(s)	544, 548
BstDEI	CTNAG	1 cut(s)	458
BstHHI	GCGC	1 cut(s)	200
BstKTI	GATC	1 cut(s)	637
BstMAI	GTCTC	2 cut(s)	360, 513
BstMBI	GATC	1 cut(s)	634
BstMWI	GCNNNNNNNGC	4 cut(s)	197, 422, 431, 452
BstNSI	RCATGY	1 cut(s)	172
BstV1I	GCAGC	4 cut(s)	365, 412, 433, 434
BsuRI	GGCC	2 cut(s)	191, 337
BtsIMutI	CAGTG	2 cut(s)	247, 455
Cac8I	GCNNGC	2 cut(s)	544, 548
CfoI	GCGC	1 cut(s)	200
Csp6I	GTAC	2 cut(s)	630, 647
CviAII	CATG	5 cut(s)	84, 169, 380, 580, 729
CviQI	GTAC	2 cut(s)	630, 647
DdeI	CTNAG	1 cut(s)	458
DpnI	GATC	1 cut(s)	636
DpnII	GATC	1 cut(s)	634
EaeI	YGGCCR	1 cut(s)	189
Eam1104I	CTCTTC	2 cut(s)	249, 516
EarI	CTCTTC	2 cut(s)	249, 516
Eco130I	CCWWGG	1 cut(s)	338
Eco147I	AGGCCT	1 cut(s)	337
Eco57I	CTGAAG	2 cut(s)	223, 252
EcoT14I	CCWWGG	1 cut(s)	338
ErhI	CCWWGG	1 cut(s)	338
FaeI	CATG	5 cut(s)	87, 172, 383, 583, 732
FalI	AAGNNNNNCTT	2 cut(s)	495, 527
FatI	CATG	5 cut(s)	83, 168, 379, 579, 728
Fnu4HI	GCNGC	4 cut(s)	354, 423, 426, 447
Fsp4HI	GCNGC	4 cut(s)	354, 423, 426, 447
FspBI	CTAG	1 cut(s)	287
GlaI	GCGC	1 cut(s)	199
GluI	GCNGC	4 cut(s)	354, 423, 426, 447
HaeIII	GGCC	2 cut(s)	191, 337
HhaI	GCGC	1 cut(s)	200
Hin1II	CATG	5 cut(s)	87, 172, 383, 583, 732
Hin6I	GCGC	1 cut(s)	198
HinP1I	GCGC	1 cut(s)	198
HinfI	GANTC	7 cut(s)	11, 53, 95, 158, 368, 506, 748
HphI	GGTGA	3 cut(s)	101, 274, 337
Hpy188I	TCNGA	1 cut(s)	52
Hpy188III	TCNNGA	3 cut(s)	38, 515, 565
Hpy99I	CGWCG	1 cut(s)	158
HpyAV	CCTTC	1 cut(s)	327
HpyCH4IV	ACGT	2 cut(s)	404, 628
HpyCH4V	TGCA	7 cut(s)	218, 353, 416, 449, 455, 560, 598
HpyF10VI	GCNNNNNNNGC	4 cut(s)	197, 422, 431, 452
HpyF3I	CTNAG	1 cut(s)	458
HpySE526I	ACGT	2 cut(s)	404, 628
Hsp92II	CATG	5 cut(s)	87, 172, 383, 583, 732
HspAI	GCGC	1 cut(s)	198
Kzo9I	GATC	1 cut(s)	634
LpnPI	CCDG	6 cut(s)	51, 501, 564, 630, 635, 730
Lsp1109I	GCAGC	4 cut(s)	365, 412, 433, 434
LweI	GCATC	1 cut(s)	585
MaeI	CTAG	1 cut(s)	287
MaeII	ACGT	2 cut(s)	404, 628
MaeIII	GTNAC	1 cut(s)	262
MalI	GATC	1 cut(s)	636
MboI	GATC	1 cut(s)	634
MboII	GAAGA	5 cut(s)	13, 266, 302, 503, 719
MhlI	GDGCHC	1 cut(s)	548
MlsI	TGGCCA	1 cut(s)	191
MluCI	AATT	5 cut(s)	26, 133, 295, 481, 519
MluNI	TGGCCA	1 cut(s)	191
MlyI	GAGTC	5 cut(s)	20, 152, 362, 515, 757
Mox20I	TGGCCA	1 cut(s)	191
MroXI	GAANNNNTTC	1 cut(s)	236
MscI	TGGCCA	1 cut(s)	191
MseI	TTAA	3 cut(s)	249, 480, 522
Msp20I	TGGCCA	1 cut(s)	191
MspA1I	CMGCKG	1 cut(s)	425
MwoI	GCNNNNNNNGC	4 cut(s)	197, 422, 431, 452
NdeII	GATC	1 cut(s)	634
NlaIII	CATG	5 cut(s)	87, 172, 383, 583, 732
NmeAIII	GCCGAG	1 cut(s)	378
NmuCI	GTSAC	1 cut(s)	262
NspI	RCATGY	1 cut(s)	172
PceI	AGGCCT	1 cut(s)	337
PciI	ACATGT	1 cut(s)	168
PcsI	WCGNNNNNNNCGW	1 cut(s)	405
PdmI	GAANNNNTTC	1 cut(s)	236
PfeI	GAWTC	2 cut(s)	53, 95
Pfl23II	CGTACG	1 cut(s)	629
PkrI	GCNGC	4 cut(s)	355, 424, 427, 448
PleI	GAGTC	5 cut(s)	19, 152, 362, 514, 756
PpsI	GAGTC	5 cut(s)	19, 152, 362, 514, 756
PscI	ACATGT	1 cut(s)	168
PspLI	CGTACG	1 cut(s)	629
PvuII	CAGCTG	1 cut(s)	425
RsaI	GTAC	2 cut(s)	631, 648
RsaNI	GTAC	2 cut(s)	630, 647
SaqAI	TTAA	3 cut(s)	249, 480, 522
SatI	GCNGC	4 cut(s)	354, 423, 426, 447
Sau3AI	GATC	1 cut(s)	634
SchI	GAGTC	5 cut(s)	20, 152, 362, 515, 757
SduI	GDGCHC	1 cut(s)	548
SfaNI	GCATC	1 cut(s)	585
SmlI	CTYRAG	1 cut(s)	563
SmoI	CTYRAG	1 cut(s)	563
Sse9I	AATT	5 cut(s)	26, 133, 295, 481, 519
SseBI	AGGCCT	1 cut(s)	337
SsiI	CCGC	1 cut(s)	752
SspMI	CTAG	1 cut(s)	287
StuI	AGGCCT	1 cut(s)	337
StyI	CCWWGG	1 cut(s)	338
TaiI	ACGT	2 cut(s)	407, 631
TaqI	TCGA	3 cut(s)	153, 408, 593
TasI	AATT	5 cut(s)	26, 133, 295, 481, 519
TatI	WGTACW	1 cut(s)	646
TfiI	GAWTC	2 cut(s)	53, 95
Tru1I	TTAA	3 cut(s)	249, 480, 522
Tru9I	TTAA	3 cut(s)	249, 480, 522
TscAI	CASTG	2 cut(s)	247, 462
TseFI	GTSAC	1 cut(s)	262
TseI	GCWGC	4 cut(s)	353, 422, 425, 446
Tsp45I	GTSAC	1 cut(s)	262
TspDTI	ATGAA	6 cut(s)	57, 72, 108, 146, 552, 596
TspGWI	ACGGA	1 cut(s)	647
TspRI	CASTG	2 cut(s)	247, 462
XapI	RAATTY	2 cut(s)	133, 295
XceI	RCATGY	1 cut(s)	172
XmnI	GAANNNNTTC	1 cut(s)	236
XspI	CTAG	1 cut(s)	287

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.