Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0014664

Physical Location & Seq

Genomic Coordinates Reverse (-)

21435057 .. 21435818

Gene Structure 762 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g18500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGGAAATGGAGTCTGCTTTCTTCCAATTTTCAAGTCCTTCAGATTTCTCATCGGATTCCTCCTTCGGTTCACTAGACTCATTTTCATGGGATGATGAATCACTACAACTTCCTTTCAATAGCCATGAGTTGATGAATTTTTCACCGTTTAGCATCAACGACTCCCAAGACACGTTGCTGCACGATGTGGTGGCCAGAAGCGCAAAACAGACATTTGTTGCACAGAACGAGGCGAACAACTTCAATAGGGTTAAAGAAGAGGAGGTGACTTCAGCCAACAACCAAACCCTAGAAGAAAAATCCACAAAGGAGAAGGCTTATAGAGGGGTGAGGAGAAGGCCTTGGGGAAAATATGCTGCCGAAATAAGAGACTCAACAAGGAATGGAATTCGGGTTTGGCTCGGCACATTCGATAGCCCTGAGGCTGCTGCTTTAGCTTATGACCAAGCTGCATTTGCGCTGAGGGGTTCTTTGGCTGTGCTTAATTTTCCAGCACAAGTTGTCCAAGAGTCTCTTCAAGAAATCAAGTATAGACACGATGAAGCGTGCTCACCTGTCATCGCACTTAAGAGGAGGCACTCCATGAAAAGAAAGTCGATGCACAAAAAGTGTAATAAACTAGTTAGCCAATGCACGGATCAAAGAAAAGTAAATGAGGTTTTGCCACAAAATGTAATGGTATTAGAGGATTTGGGCGTTGAGTATTTGGAAGAACTTTTGGACATAAGCTCCAGTGGAAGTAATAACTGGTGTCTGCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009507 GO:0009536 GO:0009719 GO:0009723 GO:0009725 GO:0009755 GO:0009873 GO:0009889 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0080090 GO:0140110 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 map04016 map04075

Pfam Domains

Protein Families

AP2

Protein Analysis

254

Amino Acids

28.74

Weight (kDa)

5.36

Isoelectric Point (pI)

66.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	106 - 156	1.4e-14	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0014664)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g21550
malus_domestica	MD05G1198700.v1.1 MD10G1184800.v1.1
prunus_persica	Prupe.8G224600_v2.0.a1
pyrus_communis	pycom05g18500
rosa_chinensis	RchiOBHm_Chr6g0288231
rosa_laevigata	RLG00000012427
rosa_multiflora	Rmu_co8374589.1_g000001 Rmu_sc0004300.1_g000003 Rmu_sc0009830.1_g000005
rosa_roxburghii	Rroxscaffold_7G00180360
rosa_rugosa	Rorug06G0194800
rosa_samantha	Rh6AG305700 Rh6BG311500 Rh6CG319500 Rh6DG304700
rosa_wichuraiana	Rw6G026450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	645
AcoI	YGGCCR	1 cut(s)	192
AcsI	RAATTY	2 cut(s)	136, 387
AcuI	CTGAAG	2 cut(s)	24, 255
AdeI	CACNNNGTG	1 cut(s)	187
AfiI	CCNNNNNNNGG	1 cut(s)	634
AflII	CTTAAG	1 cut(s)	566
AflIII	ACRYGT	1 cut(s)	171
AgsI	TTSAA	4 cut(s)	33, 118, 244, 518
AhlI	ACTAGT	1 cut(s)	619
AjuI	GAANNNNNNNTTGG	4 cut(s)	379, 411, 498, 530
AluBI	AGCT	3 cut(s)	437, 449, 729
AluI	AGCT	3 cut(s)	437, 449, 729
Alw21I	GWGCWC	1 cut(s)	551
Alw26I	GTCTC	2 cut(s)	363, 516
AlwI	GGATC	1 cut(s)	645
AoxI	GGCC	2 cut(s)	192, 338
ApeKI	GCWGC	5 cut(s)	178, 356, 425, 428, 449
ApoI	RAATTY	2 cut(s)	136, 387
Asp700I	GAANNNNTTC	1 cut(s)	239
AspLEI	GCGC	2 cut(s)	203, 460
AsuHPI	GGTGA	4 cut(s)	135, 277, 340, 543
AxyI	CCTNAGG	1 cut(s)	420
BalI	TGGCCA	1 cut(s)	194
Bbv12I	GWGCWC	1 cut(s)	551
BbvCI	CCTCAGC	1 cut(s)	461
BbvI	GCAGC	5 cut(s)	165, 343, 412, 415, 436
BcoDI	GTCTC	2 cut(s)	363, 516
BcuI	ACTAGT	1 cut(s)	619
BfaI	CTAG	3 cut(s)	74, 290, 620
BfmI	CTRYAG	1 cut(s)	755
BfrI	CTTAAG	1 cut(s)	566
BisI	GCNGC	5 cut(s)	179, 357, 426, 429, 450
BlsI	GCNGC	5 cut(s)	180, 358, 427, 430, 451
BmsI	GCATC	2 cut(s)	162, 588
BpmI	CTGGAG	1 cut(s)	715
Bpu10I	CCTNAGC	1 cut(s)	461
BsaJI	CCNNGG	1 cut(s)	341
BsaXI	ACNNNNNCTCC	2 cut(s)	713, 743
Bsc4I	CCNNNNNNNGG	1 cut(s)	634
Bse1I	ACTGG	2 cut(s)	732, 752
Bse21I	CCTNAGG	1 cut(s)	420
BseDI	CCNNGG	1 cut(s)	341
BseGI	GGATG	1 cut(s)	97
BseLI	CCNNNNNNNGG	1 cut(s)	634
BseMII	CTCAG	2 cut(s)	411, 452
BseNI	ACTGG	2 cut(s)	732, 752
BseRI	GAGGAG	3 cut(s)	275, 346, 586
BseXI	GCAGC	5 cut(s)	165, 343, 412, 415, 436
BsgI	GTGCAG	1 cut(s)	164
BshFI	GGCC	2 cut(s)	194, 340
BsiHKAI	GWGCWC	1 cut(s)	551
BslI	CCNNNNNNNGG	1 cut(s)	634
BsmAI	GTCTC	2 cut(s)	363, 516
BsnI	GGCC	2 cut(s)	194, 340
Bsp1286I	GDGCHC	1 cut(s)	551
Bsp143I	GATC	1 cut(s)	637
BspANI	GGCC	2 cut(s)	194, 340
BspCNI	CTCAG	2 cut(s)	412, 453
BspMAI	CTGCAG	1 cut(s)	759
BspPI	GGATC	1 cut(s)	645
BspTI	CTTAAG	1 cut(s)	566
BsrI	ACTGG	2 cut(s)	732, 752
BssECI	CCNNGG	1 cut(s)	341
BssMI	GATC	1 cut(s)	637
BssT1I	CCWWGG	1 cut(s)	341
Bst4CI	ACNGT	1 cut(s)	147
Bst6I	CTCTTC	2 cut(s)	252, 519
BstAFI	CTTAAG	1 cut(s)	566
BstC8I	GCNNGC	1 cut(s)	547
BstDEI	CTNAG	2 cut(s)	420, 461
BstF5I	GGATG	1 cut(s)	97
BstHHI	GCGC	2 cut(s)	203, 460
BstKTI	GATC	1 cut(s)	640
BstMAI	GTCTC	2 cut(s)	363, 516
BstMBI	GATC	1 cut(s)	637
BstMWI	GCNNNNNNNGC	3 cut(s)	200, 434, 455
BstSFI	CTRYAG	1 cut(s)	755
BstV1I	GCAGC	5 cut(s)	165, 343, 412, 415, 436
Bsu36I	CCTNAGG	1 cut(s)	420
BsuRI	GGCC	2 cut(s)	194, 340
BtgZI	GCGATG	1 cut(s)	544
BtsCI	GGATG	1 cut(s)	97
BtsIMutI	CAGTG	1 cut(s)	739
Cac8I	GCNNGC	1 cut(s)	547
CfoI	GCGC	2 cut(s)	203, 460
CviAII	CATG	3 cut(s)	87, 125, 583
DdeI	CTNAG	2 cut(s)	420, 461
DpnI	GATC	1 cut(s)	639
DpnII	GATC	1 cut(s)	637
DraIII	CACNNNGTG	1 cut(s)	187
EaeI	YGGCCR	1 cut(s)	192
Eam1104I	CTCTTC	2 cut(s)	252, 519
EarI	CTCTTC	2 cut(s)	252, 519
Eco130I	CCWWGG	1 cut(s)	341
Eco147I	AGGCCT	1 cut(s)	340
Eco57I	CTGAAG	2 cut(s)	24, 255
Eco81I	CCTNAGG	1 cut(s)	420
EcoRI	GAATTC	1 cut(s)	387
EcoT14I	CCWWGG	1 cut(s)	341
ErhI	CCWWGG	1 cut(s)	341
FaeI	CATG	3 cut(s)	90, 128, 586
FaiI	YATR	8 cut(s)	88, 126, 321, 354, 441, 531, 584, 725
FalI	AAGNNNNNCTT	2 cut(s)	498, 530
FatI	CATG	3 cut(s)	86, 124, 582
Fnu4HI	GCNGC	5 cut(s)	179, 357, 426, 429, 450
FokI	GGATG	1 cut(s)	104
Fsp4HI	GCNGC	5 cut(s)	179, 357, 426, 429, 450
FspBI	CTAG	3 cut(s)	74, 290, 620
GlaI	GCGC	2 cut(s)	202, 459
GluI	GCNGC	5 cut(s)	179, 357, 426, 429, 450
GsuI	CTGGAG	1 cut(s)	715
HaeIII	GGCC	2 cut(s)	194, 340
HhaI	GCGC	2 cut(s)	203, 460
Hin1II	CATG	3 cut(s)	90, 128, 586
Hin6I	GCGC	2 cut(s)	201, 458
HinP1I	GCGC	2 cut(s)	201, 458
HinfI	GANTC	7 cut(s)	11, 56, 77, 98, 161, 371, 509
HphI	GGTGA	4 cut(s)	135, 277, 340, 543
Hpy166II	GTNNAC	1 cut(s)	71
Hpy188I	TCNGA	2 cut(s)	43, 55
Hpy188III	TCNNGA	1 cut(s)	518
Hpy8I	GTNNAC	1 cut(s)	71
HpyAV	CCTTC	4 cut(s)	48, 73, 307, 330
HpyCH4III	ACNGT	1 cut(s)	147
HpyCH4IV	ACGT	1 cut(s)	173
HpyCH4V	TGCA	6 cut(s)	181, 221, 452, 601, 633, 757
HpyF10VI	GCNNNNNNNGC	3 cut(s)	200, 434, 455
HpyF3I	CTNAG	2 cut(s)	420, 461
HpySE526I	ACGT	1 cut(s)	173
Hsp92II	CATG	3 cut(s)	90, 128, 586
HspAI	GCGC	2 cut(s)	201, 458
Kzo9I	GATC	1 cut(s)	637
LmnI	GCTCC	1 cut(s)	734
LpnPI	CCDG	6 cut(s)	208, 432, 504, 567, 733, 745
Lsp1109I	GCAGC	5 cut(s)	165, 343, 412, 415, 436
LweI	GCATC	2 cut(s)	162, 588
MaeI	CTAG	3 cut(s)	74, 290, 620
MaeII	ACGT	1 cut(s)	173
MaeIII	GTNAC	1 cut(s)	265
MalI	GATC	1 cut(s)	639
MboI	GATC	1 cut(s)	637
MboII	GAAGA	5 cut(s)	13, 269, 305, 506, 722
MhlI	GDGCHC	1 cut(s)	551
MlsI	TGGCCA	1 cut(s)	194
MluCI	AATT	4 cut(s)	26, 136, 387, 484
MluNI	TGGCCA	1 cut(s)	194
MlyI	GAGTC	5 cut(s)	20, 71, 155, 365, 518
Mox20I	TGGCCA	1 cut(s)	194
MroXI	GAANNNNTTC	1 cut(s)	239
MscI	TGGCCA	1 cut(s)	194
MseI	TTAA	3 cut(s)	252, 483, 567
MslI	CAYNNNNRTG	1 cut(s)	85
Msp20I	TGGCCA	1 cut(s)	194
MspCI	CTTAAG	1 cut(s)	566
MwoI	GCNNNNNNNGC	3 cut(s)	200, 434, 455
NdeII	GATC	1 cut(s)	637
NlaIII	CATG	3 cut(s)	90, 128, 586
NmeAIII	GCCGAG	1 cut(s)	381
NmuCI	GTSAC	1 cut(s)	265
PceI	AGGCCT	1 cut(s)	340
PcsI	WCGNNNNNNNCGW	1 cut(s)	408
PdmI	GAANNNNTTC	1 cut(s)	239
PfeI	GAWTC	2 cut(s)	56, 98
PkrI	GCNGC	5 cut(s)	180, 358, 427, 430, 451
PleI	GAGTC	5 cut(s)	19, 71, 155, 365, 517
PpsI	GAGTC	5 cut(s)	19, 71, 155, 365, 517
PstI	CTGCAG	1 cut(s)	759
RseI	CAYNNNNRTG	1 cut(s)	85
SaqAI	TTAA	3 cut(s)	252, 483, 567
SatI	GCNGC	5 cut(s)	179, 357, 426, 429, 450
Sau3AI	GATC	1 cut(s)	637
SchI	GAGTC	5 cut(s)	20, 71, 155, 365, 518
SduI	GDGCHC	1 cut(s)	551
SetI	ASST	7 cut(s)	176, 267, 439, 451, 556, 660, 731
SfaNI	GCATC	2 cut(s)	162, 588
SfcI	CTRYAG	1 cut(s)	755
SmiMI	CAYNNNNRTG	1 cut(s)	85
SmlI	CTYRAG	1 cut(s)	566
SmoI	CTYRAG	1 cut(s)	566
SpeI	ACTAGT	1 cut(s)	619
Sse9I	AATT	4 cut(s)	26, 136, 387, 484
SseBI	AGGCCT	1 cut(s)	340
SspMI	CTAG	3 cut(s)	74, 290, 620
StuI	AGGCCT	1 cut(s)	340
StyI	CCWWGG	1 cut(s)	341
TaaI	ACNGT	1 cut(s)	147
TaiI	ACGT	1 cut(s)	176
TaqI	TCGA	2 cut(s)	411, 596
TasI	AATT	4 cut(s)	26, 136, 387, 484
TfiI	GAWTC	2 cut(s)	56, 98
Tru1I	TTAA	3 cut(s)	252, 483, 567
Tru9I	TTAA	3 cut(s)	252, 483, 567
TscAI	CASTG	1 cut(s)	739
TseFI	GTSAC	1 cut(s)	265
TseI	GCWGC	5 cut(s)	178, 356, 425, 428, 449
Tsp45I	GTSAC	1 cut(s)	265
TspDTI	ATGAA	5 cut(s)	75, 111, 149, 555, 599
TspGWI	ACGGA	1 cut(s)	650
TspRI	CASTG	1 cut(s)	739
Vha464I	CTTAAG	1 cut(s)	566
XapI	RAATTY	2 cut(s)	136, 387
XmnI	GAANNNNTTC	1 cut(s)	239
XspI	CTAG	3 cut(s)	74, 290, 620

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.