Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0014664

Physical Location & Seq

Genomic Coordinates Reverse (-)

50384339 .. 50385662

Gene Structure 1324 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG305700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGGAAATGGAGTCATACTCTCTCTTCCAATTCTCAAACCCTTCTCAATTCTCACCTGAATCCTCCTTCGGTTCGTCGCTAGATTCTTTCTCGTGGGACGACGCTTTACTCGATACTTTCAACAACGATATGTTGAACTTTCCACCATTTAACACAAATCATGAGCCTCAAGATTTGTTGCTGTTCGATGCTGTGGCTAAAGAACCAGCATTAGTGGCTGAAGAAACGCACTGGTTTGGTGGAGCTGTAAAGGAAGAGGAGGTCACTTCCAATTCCAATGCCTTCCAAGTGTTTGAAGGGAAACCCAGAAAGGAAAAGTCGTACAGAGGGGTCAGGAGGAGGCCTTGGGGCAAATACGCAGCTGAAATAAGGGACTCGACGAGGCATGGAGTCAGGGTTTGGCTTGGCACTTTCGATAGTGCCGAGGCAGCTGCTTTGGCCTATGACCAAGCTGCATTTTCACTGAGGGGTCCTTTGGCTGTGCTCAATTTTCCGGTTGAAGTTGTGAGGGAGTCACTTCAAGAGATCAAGTGTAGATATGACGAAGGGTGCTCGCCAATTGTGGCACTCAAGAGGAGGCACTCGACGAGAAGAAAGTCTTTGTGCAAAAAGAATAGTTGTAATAAAGAGCAAGGAAAAGTCAAGAGTTCGATTCCTTCCAAAGTAACAAAGAATAAAACGCAAGAGAACGTCGTAACGCAAAATGTGGTGGTATTAGAGGATTTGGGTGCTGAATACTTGGAGGAGCTTTTGTATCAAAGCTCATGTGAAAGTGCTAGTTTTTCTTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009507 GO:0009536 GO:0009719 GO:0009723 GO:0009725 GO:0009755 GO:0009873 GO:0009889 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0080090 GO:0140110 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 map04016 map04075

Pfam Domains

Protein Families

AP2

Protein Analysis

263

Amino Acids

29.65

Weight (kDa)

5.56

Isoelectric Point (pI)

55.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	107 - 157	9.7e-15	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0014664)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g21550
malus_domestica	MD05G1198700.v1.1 MD10G1184800.v1.1
prunus_persica	Prupe.8G224600_v2.0.a1
pyrus_communis	pycom05g18500
rosa_chinensis	RchiOBHm_Chr6g0288231
rosa_laevigata	RLG00000012427
rosa_multiflora	Rmu_co8374589.1_g000001 Rmu_sc0004300.1_g000003 Rmu_sc0009830.1_g000005
rosa_roxburghii	Rroxscaffold_7G00180360
rosa_rugosa	Rorug06G0194800
rosa_samantha	Rh6AG305700 Rh6BG311500 Rh6CG319500 Rh6DG304700
rosa_wichuraiana	Rw6G026450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	240
AfaI	GTAC	1 cut(s)	323
AgsI	TTSAA	5 cut(s)	121, 136, 296, 500, 521
AluBI	AGCT	6 cut(s)	245, 362, 431, 452, 748, 762
AluI	AGCT	6 cut(s)	245, 362, 431, 452, 748, 762
Alw21I	GWGCWC	2 cut(s)	486, 554
AoxI	GGCC	2 cut(s)	341, 438
ApeKI	GCWGC	4 cut(s)	359, 428, 431, 452
AspS9I	GGNCC	1 cut(s)	470
AsuHPI	GGTGA	1 cut(s)	45
AvaII	GGWCC	1 cut(s)	470
BauI	CACGAG	1 cut(s)	91
Bbv12I	GWGCWC	2 cut(s)	486, 554
BbvI	GCAGC	4 cut(s)	371, 418, 439, 440
BcgI	CGANNNNNNTGC	2 cut(s)	413, 447
BfaI	CTAG	2 cut(s)	80, 777
BisI	GCNGC	4 cut(s)	360, 429, 432, 453
BlsI	GCNGC	4 cut(s)	361, 430, 433, 454
Bme18I	GGWCC	1 cut(s)	470
BmgT120I	GGNCC	1 cut(s)	470
BmiI	GGNNCC	1 cut(s)	471
BmsI	GCATC	1 cut(s)	178
BplI	GAGNNNNNCTC	1 cut(s)	34
BpuEI	CTTGAG	2 cut(s)	153, 554
BsaJI	CCNNGG	2 cut(s)	344, 423
BsaWI	WCCGGW	1 cut(s)	493
BsaXI	ACNNNNNCTCC	4 cut(s)	381, 411, 737, 767
Bse1I	ACTGG	1 cut(s)	236
BseDI	CCNNGG	2 cut(s)	344, 423
BseMII	CTCAG	1 cut(s)	455
BseNI	ACTGG	1 cut(s)	236
BseRI	GAGGAG	4 cut(s)	272, 352, 589, 758
BseXI	GCAGC	4 cut(s)	371, 418, 439, 440
BshFI	GGCC	2 cut(s)	343, 440
BsiHKAI	GWGCWC	2 cut(s)	486, 554
BsiSI	CCGG	1 cut(s)	494
BslFI	GGGAC	2 cut(s)	110, 386
BsmFI	GGGAC	2 cut(s)	110, 386
BsnI	GGCC	2 cut(s)	343, 440
Bsp1286I	GDGCHC	2 cut(s)	486, 554
Bsp143I	GATC	1 cut(s)	525
BspANI	GGCC	2 cut(s)	343, 440
BspCNI	CTCAG	1 cut(s)	456
BspHI	TCATGA	1 cut(s)	160
BspLI	GGNNCC	1 cut(s)	471
BsrI	ACTGG	1 cut(s)	236
BssECI	CCNNGG	2 cut(s)	344, 423
BssMI	GATC	1 cut(s)	525
BssSI	CACGAG	1 cut(s)	91
BssT1I	CCWWGG	1 cut(s)	344
Bst2BI	CACGAG	1 cut(s)	91
Bst6I	CTCTTC	2 cut(s)	29, 249
BstC8I	GCNNGC	1 cut(s)	554
BstDEI	CTNAG	1 cut(s)	464
BstKTI	GATC	1 cut(s)	528
BstMBI	GATC	1 cut(s)	525
BstMWI	GCNNNNNNNGC	3 cut(s)	215, 428, 437
BstV1I	GCAGC	4 cut(s)	371, 418, 439, 440
BsuRI	GGCC	2 cut(s)	343, 440
BtsIMutI	CAGTG	2 cut(s)	229, 461
Cac8I	GCNNGC	1 cut(s)	554
CciI	TCATGA	1 cut(s)	160
Cfr13I	GGNCC	1 cut(s)	470
CseI	GACGC	1 cut(s)	110
Csp6I	GTAC	1 cut(s)	322
CviAII	CATG	3 cut(s)	161, 386, 765
CviQI	GTAC	1 cut(s)	322
DdeI	CTNAG	1 cut(s)	464
DpnI	GATC	1 cut(s)	527
DpnII	GATC	1 cut(s)	525
Eam1104I	CTCTTC	2 cut(s)	29, 249
EarI	CTCTTC	2 cut(s)	29, 249
Eco130I	CCWWGG	1 cut(s)	344
Eco147I	AGGCCT	1 cut(s)	343
Eco47I	GGWCC	1 cut(s)	470
Eco57I	CTGAAG	1 cut(s)	240
EcoO109I	RGGNCCY	1 cut(s)	470
EcoT14I	CCWWGG	1 cut(s)	344
ErhI	CCWWGG	1 cut(s)	344
FaeI	CATG	3 cut(s)	164, 389, 768
FaiI	YATR	7 cut(s)	16, 131, 162, 387, 444, 540, 766
FalI	AAGNNNNNCTT	2 cut(s)	583, 615
FaqI	GGGAC	2 cut(s)	110, 386
FatI	CATG	3 cut(s)	160, 385, 764
Fnu4HI	GCNGC	4 cut(s)	360, 429, 432, 453
Fsp4HI	GCNGC	4 cut(s)	360, 429, 432, 453
FspBI	CTAG	2 cut(s)	80, 777
GluI	GCNGC	4 cut(s)	360, 429, 432, 453
HaeIII	GGCC	2 cut(s)	343, 440
HapII	CCGG	1 cut(s)	494
HgaI	GACGC	1 cut(s)	110
Hin1II	CATG	3 cut(s)	164, 389, 768
HinfI	GANTC	7 cut(s)	11, 59, 83, 374, 390, 512, 652
HpaII	CCGG	1 cut(s)	494
HphI	GGTGA	1 cut(s)	45
Hpy188III	TCNNGA	6 cut(s)	161, 170, 334, 521, 571, 643
Hpy99I	CGWCG	5 cut(s)	79, 104, 382, 589, 695
HpyAV	CCTTC	6 cut(s)	51, 76, 290, 292, 539, 666
HpyCH4IV	ACGT	1 cut(s)	690
HpyCH4V	TGCA	2 cut(s)	455, 606
HpyF10VI	GCNNNNNNNGC	3 cut(s)	215, 428, 437
HpyF3I	CTNAG	1 cut(s)	464
HpySE526I	ACGT	1 cut(s)	690
Hsp92II	CATG	3 cut(s)	164, 389, 768
Kzo9I	GATC	1 cut(s)	525
LmnI	GCTCC	2 cut(s)	242, 745
LpnPI	CCDG	7 cut(s)	69, 217, 219, 319, 319, 379, 507
Lsp1109I	GCAGC	4 cut(s)	371, 418, 439, 440
LweI	GCATC	1 cut(s)	178
MaeI	CTAG	2 cut(s)	80, 777
MaeII	ACGT	1 cut(s)	690
MaeIII	GTNAC	4 cut(s)	262, 513, 664, 694
MalI	GATC	1 cut(s)	527
MboI	GATC	1 cut(s)	525
MboII	GAAGA	4 cut(s)	16, 233, 266, 603
MfeI	CAATTG	1 cut(s)	558
MhlI	GDGCHC	2 cut(s)	486, 554
MluCI	AATT	5 cut(s)	29, 47, 271, 487, 558
MlyI	GAGTC	4 cut(s)	20, 368, 399, 521
MseI	TTAA	1 cut(s)	150
MspA1I	CMGCKG	2 cut(s)	362, 431
MspI	CCGG	1 cut(s)	494
MunI	CAATTG	1 cut(s)	558
MwoI	GCNNNNNNNGC	3 cut(s)	215, 428, 437
NdeII	GATC	1 cut(s)	525
NlaIII	CATG	3 cut(s)	164, 389, 768
NlaIV	GGNNCC	1 cut(s)	471
NmeAIII	GCCGAG	1 cut(s)	448
NmuCI	GTSAC	2 cut(s)	262, 513
PagI	TCATGA	1 cut(s)	160
PceI	AGGCCT	1 cut(s)	343
PcsI	WCGNNNNNNNCGW	2 cut(s)	108, 420
PfeI	GAWTC	3 cut(s)	59, 83, 652
PkrI	GCNGC	4 cut(s)	361, 430, 433, 454
PleI	GAGTC	4 cut(s)	19, 368, 398, 520
PpsI	GAGTC	4 cut(s)	19, 368, 398, 520
PpuMI	RGGWCCY	1 cut(s)	470
Psp5II	RGGWCCY	1 cut(s)	470
PspN4I	GGNNCC	1 cut(s)	471
PspPI	GGNCC	1 cut(s)	470
PspPPI	RGGWCCY	1 cut(s)	470
PvuII	CAGCTG	2 cut(s)	362, 431
RsaI	GTAC	1 cut(s)	323
RsaNI	GTAC	1 cut(s)	322
SaqAI	TTAA	1 cut(s)	150
SatI	GCNGC	4 cut(s)	360, 429, 432, 453
Sau3AI	GATC	1 cut(s)	525
Sau96I	GGNCC	1 cut(s)	470
SchI	GAGTC	4 cut(s)	20, 368, 399, 521
SduI	GDGCHC	2 cut(s)	486, 554
SetI	ASST	9 cut(s)	58, 247, 264, 364, 433, 454, 693, 750, 764
SfaNI	GCATC	1 cut(s)	178
SinI	GGWCC	1 cut(s)	470
SmlI	CTYRAG	2 cut(s)	168, 569
SmoI	CTYRAG	2 cut(s)	168, 569
Sse9I	AATT	5 cut(s)	29, 47, 271, 487, 558
SseBI	AGGCCT	1 cut(s)	343
SspMI	CTAG	2 cut(s)	80, 777
StuI	AGGCCT	1 cut(s)	343
StyI	CCWWGG	1 cut(s)	344
TaiI	ACGT	1 cut(s)	693
TaqI	TCGA	6 cut(s)	111, 186, 377, 414, 584, 650
TasI	AATT	5 cut(s)	29, 47, 271, 487, 558
TfiI	GAWTC	3 cut(s)	59, 83, 652
Tru1I	TTAA	1 cut(s)	150
Tru9I	TTAA	1 cut(s)	150
TscAI	CASTG	2 cut(s)	236, 468
TseFI	GTSAC	2 cut(s)	262, 513
TseI	GCWGC	4 cut(s)	359, 428, 431, 452
Tsp45I	GTSAC	2 cut(s)	262, 513
TspRI	CASTG	2 cut(s)	236, 468
VpaK11BI	GGWCC	1 cut(s)	470
XspI	CTAG	2 cut(s)	80, 777

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.