Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0013522

Physical Location & Seq

Genomic Coordinates Reverse (-)

17981123 .. 17987334

Gene Structure 6212 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g21710.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2661 bp

ATGATGTTCGGTTGGCTTAAGGGTGTGAAGTCTATCGGCAGTTTTAAGTGGCGTGGTGAATCATCTTTGACAACATCTTTGCTCAGGGATGTGGCTCCTGAGGTTGAATTATCTCAGTATGGAAGGGCACTGAGTCCAAGTCCAGGTAGCGAGAGCCCAACTGGGCTTCTTAATGGTGAGAGCGTAAATGTGGAACCAATTGCTGATTTGGACCTGTTCTTTGAAAGGCTGTACAGCTACTATTGTGATAAAGGGCTCTGGTGTATTGTCATAAAGTGGATAGTAGAGCTTCTGAGCCTCGGTTTCACCATATGCTTCTCTGGGTTCTTCTTATTATTTGTTGATTGGAATGGTCTTCGTAATGCAAAGTGTGGGATGGATGCATTTCAATCTGGAACCAAGCCCTGTGATCTTGCTACCGAAGCTCTTCATCAGCACCCATTAAGCCCTCTGACGCTTTCCAAAGCGATAATTGTTGGATATTTGTTTATATTTTCCATTTATTGGATCTTCTGTTTCCTGAGGTTTTTTGCTCAACTACGAGATACTTTGGGAGTCCGTCACTTCTATCACAACAGCCTCCATGTCACCGACAATGAAATTAAGACAATGCCATGGGCATCAATTTTGGAAAAGGTTGTCCAGCTACAAAGATCACAGCAGCTTTGTGTGGTCAAAGATCTTTCTGCTCATGATGTGGTTATGCGTCTGATGCGGAAGGAGAACTATTTAATTGGAATGCTTAACAAGGGGGTTCTTTCTTTTCCAATCTCTCAGTGGGTCCCAGGTACTGGTCCTACTGTCAAACTGCACTCAAATGGACAGCAAGAGCGTCTAATTCTGACAAAAACCCTTGAGTGGACCTTGAATTGGTGCATCCTGCAGAGCATGTTTGATAGGAATTTTTGTGTTAGAAGGGACTTTGTATCAAATCCAAGAACATTACAGAAAAGACTCATGGTAGTTGGGCTTGTTATGCTTCTCCTTTCGCCATTTCTTGTCATATTCATGCTGGTATATCTCTTCTTAAGGCACGCAGAACAATTTTATAACCATCCGAGCACTGCTTCATCGAGAAGATGGTCAAATTTGTCAAGGTGGATGTTTAGGGAATTCAATGAGGTGGACCACTTGTTCAAACACAGAATCAATAGCAGTTTGGTACATGCTTCTGAATATTTGAAGCAATTTCCTTCTCCTATTATATCCATTATAGCAAAGTTCATCTCATTTGTGTCTGGTGGCTTCGCTGCTATTCTAATCATCATCGCGTTCCTAGAGGAATCTCTGCTAGAGGGCCATATATTTGGTCGCAACTTGTTCTGGTATGCTGCGGTTTTTGGAACTATAACAGCTATTAGCAGGGCTGCAATTAGTGATGAGCTTCTGGTCCTTGATCCAGAGGGGGCAATGTCTATGGTGGTTCAGTACACACATTATATGCCGAAGACATGGCGTGGCAAAGAGAATACTGAGGGTGTTCGGACAGAGTTTGAATCCCTGTTTCAGTATACTGGAATGATGTTACTTGAGGAGATGGCTTCTATCTTCCTCACTCCATATTTACTTATATTTGTGGTTCCAAAGCGGGTGGATGACATTTTAGAGTTTATTGCAGAATACACAATTGATATTGAAGGTGTTGGTCATGTTTGTAGTTTTAGTGCCTTTGATTTTCAAAAACATGGTAATAGAAACTATGGGTCACCTTTCAACGTATCTCGCTCACAGAGGAGTTCTCAGGGGAAAATGGAGAAATCGTTCTTGAGCTTCCAGTGTAGCTATCCGTCGTGGGACCCAAATGCAGAAGGACATCAGTTTCTTTTGAATCTTAGAACTTTCAGGGAGCAAAAGTTGCAGGGACAAGGACCTAGACATGCATATTCTCCCCAGAGAATGTCACCTGGTAGCCCCAGTTTGAGAGCCTTTGGTGGCATGAACTATTTATCGAGGGAAAGGCTGCATCATAATCCTAGAAATGGCTATCAATTAGGTTCTCTGTGGTTAATTGATGCAGAGCAGAAGAATCATCCATACCTTCTTGATTGGTATTACACATCTGCCCCACACCATACAACGAGTTACAAGAATAGTCTGGAAGAACCATTTGAAGGTGCTGAGCATCAGTCTGTGGATTGGATGCCGCCCAACTTCACAGAAAATGGAGCAAGATTTGAAGATCTTTGGGACCATCATTATGAGGATCGATCACAGTCATATCTGGGGGCTTCTACATCAGCTCCATTCCCCCGAGATAATGTACTTCAGCACCATGACACTGGTAATCCGGCACACCAAGTGCGGAGTCACTGGTGGGCTAGAACTGGCCCTCACAGTACACAGCCCCAGTCAAGTTTCCTTGATCCTCCACAGTCAAGTTTTCTTGAGCCTCCCAATTTCATGCGCCGACCTTCAGATAAGTATTATGAAAATTTCTCAGACAGAAGCGTAGAGGAACAGGATGAAGAACATGAACGGGAACAGAATGAAAGACAAGATGCCGAACAAGATGTAGAGCAGGACCAGGAGTTGGATTGGAGGAGGAACTACCACAATCTATCTCGAACTACTTATATGGATGACTTAGACTTAGAGGCAGGAGAATTCAATCTTCATTTTGATGATGTATATAGTAGACGTCCTGAAACCCCTAAGATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000045 GO:0000407 GO:0000422 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005776 GO:0006914 GO:0006950 GO:0006952 GO:0006996 GO:0007005 GO:0007033 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0016043 GO:0016236 GO:0022411 GO:0022607 GO:0033036 GO:0034497 GO:0034613 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044248 GO:0044424 GO:0044444 GO:0044464 GO:0044804 GO:0044805 GO:0050832 GO:0050896 GO:0051179 GO:0051641 GO:0051704 GO:0051707 GO:0061726 GO:0061919 GO:0070727 GO:0070925 GO:0071840 GO:0098542 GO:1903008 GO:1905037

KEGG Pathways

Metabolic & Signaling

ko04136 ko04137 ko04138 ko04140 map04136 map04137 map04138 map04140

Pfam Domains

Protein Families

APG9

Protein Analysis

887

Amino Acids

102.68

Weight (kDa)

6.07

Isoelectric Point (pI)

51.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ATG9	PF04109	1 - 355	4.4e-128	Autophagy protein ATG9

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013522)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31260
fragaria_vesca	FvH4_2g21710
malus_domestica	MD05G1199600.v1.1 MD10G1185900.v1.1
prunus_persica	Prupe.8G225400_v2.0.a1 Prupe.8G225400_v2.0.a1
pyrus_communis	pycom05g18600 pycom10g16080
rosa_chinensis	RchiOBHm_Chr6g0288391
rosa_laevigata	RLG00000012408
rosa_multiflora	Rmu_sc0001038.1_g000011
rosa_roxburghii	Rroxscaffold_7G00180100
rosa_rugosa	Rorug06G0196200
rosa_samantha	Rh6AG307100 Rh6BG313100 Rh6CG320900 Rh6DG306300
rosa_wichuraiana	Rw6G026570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1050
AatII	GACGTC	1 cut(s)	2641
AccB7I	CCANNNNNTGG	3 cut(s)	504, 791, 2530
AccI	GTMKAC	2 cut(s)	1511, 2635
AccII	CGCG	1 cut(s)	1271
AciI	CCGC	5 cut(s)	715, 1334, 1588, 2144, 2302
AclWI	GGATC	4 cut(s)	515, 1391, 2211, 2357
AcsI	RAATTY	5 cut(s)	901, 1087, 1112, 2431, 2603
AcuI	CTGAAG	2 cut(s)	2249, 2397
AcyI	GRCGYC	1 cut(s)	2638
AdeI	CACNNNGTG	1 cut(s)	2299
AfaI	GTAC	6 cut(s)	233, 790, 1164, 1430, 2262, 2338
AfiI	CCNNNNNNNGG	8 cut(s)	143, 504, 791, 858, 870, 1979, 2111, 2530
AflII	CTTAAG	2 cut(s)	17, 1027
AjnI	CCWGG	4 cut(s)	142, 784, 1903, 2523
AloI	GAACNNNNNNTCC	4 cut(s)	1118, 1150, 1745, 1777
Alw21I	GWGCWC	1 cut(s)	1064
AlwI	GGATC	4 cut(s)	515, 1391, 2211, 2357
AlwNI	CAGNNNCTG	1 cut(s)	791
Ama87I	CYCGRG	1 cut(s)	2250
AoxI	GGCC	2 cut(s)	1297, 2326
ApeKI	GCWGC	5 cut(s)	661, 1250, 1331, 1367, 1960
ApoI	RAATTY	5 cut(s)	901, 1087, 1112, 2431, 2603
ArsI	GACNNNNNNTTYG	4 cut(s)	61, 93, 203, 235
Asp700I	GAANNNNTTC	2 cut(s)	426, 1760
AspLEI	GCGC	1 cut(s)	2406
AsuHPI	GGTGA	6 cut(s)	68, 188, 298, 580, 1698, 1893
AvaI	CYCGRG	1 cut(s)	2250
AxyI	CCTNAGG	2 cut(s)	99, 521
BaeGI	GKGCMC	1 cut(s)	130
BanII	GRGCYC	2 cut(s)	158, 258
BbsI	GAAGAC	2 cut(s)	347, 1454
Bbv12I	GWGCWC	1 cut(s)	1064
BbvI	GCAGC	5 cut(s)	673, 1237, 1318, 1354, 1947
BccI	CCATC	5 cut(s)	370, 1062, 1074, 1531, 2199
BciT130I	CCWGG	4 cut(s)	144, 786, 1905, 2525
BfaI	CTAG	5 cut(s)	1277, 1292, 1872, 1974, 2319
BfmI	CTRYAG	1 cut(s)	881
BfrI	CTTAAG	2 cut(s)	17, 1027
BglII	AGATCT	2 cut(s)	679, 2179
BisI	GCNGC	6 cut(s)	662, 1251, 1332, 1368, 1961, 2144
BlpI	GCTNAGC	1 cut(s)	2118
BlsI	GCNGC	6 cut(s)	663, 1252, 1333, 1369, 1962, 2145
Bme1390I	CCNGG	4 cut(s)	144, 786, 1905, 2525
BmeT110I	CYCGRG	1 cut(s)	2250
BmiI	GGNNCC	9 cut(s)	96, 195, 397, 782, 783, 1581, 1796, 1797, 2189
BmrFI	CCNGG	4 cut(s)	144, 786, 1905, 2525
BmrI	ACTGGG	3 cut(s)	171, 1908, 2341
BmsI	GCATC	9 cut(s)	370, 629, 702, 885, 1972, 2002, 2130, 2131, 2488
BmuI	ACTGGG	3 cut(s)	171, 1908, 2341
BpiI	GAAGAC	2 cut(s)	347, 1454
BplI	GAGNNNNNCTC	2 cut(s)	1723, 1755
Bpu10I	CCTNAGC	1 cut(s)	83
Bpu1102I	GCTNAGC	1 cut(s)	2118
BpuEI	CTTGAG	4 cut(s)	875, 1550, 1786, 2405
Bsa29I	ATCGAT	1 cut(s)	2206
BsaHI	GRCGYC	1 cut(s)	2638
BsaJI	CCNNGG	3 cut(s)	298, 614, 784
BsaXI	ACNNNNNCTCC	6 cut(s)	1745, 1775, 1838, 1868, 2224, 2254
Bsc4I	CCNNNNNNNGG	8 cut(s)	143, 504, 791, 858, 870, 1979, 2111, 2530
Bse1I	ACTGG	9 cut(s)	166, 796, 1519, 1774, 1914, 2284, 2315, 2329, 2347
Bse21I	CCTNAGG	2 cut(s)	99, 521
Bse3DI	GCAATG	1 cut(s)	1416
BseBI	CCWGG	4 cut(s)	144, 786, 1905, 2525
BseCI	ATCGAT	1 cut(s)	2206
BseDI	CCNNGG	3 cut(s)	298, 614, 784
BseLI	CCNNNNNNNGG	8 cut(s)	143, 504, 791, 858, 870, 1979, 2111, 2530
BseMI	GCAATG	1 cut(s)	1416
BseNI	ACTGG	9 cut(s)	166, 796, 1519, 1774, 1914, 2284, 2315, 2329, 2347
BseRI	GAGGAG	3 cut(s)	1547, 1747, 2554
BseSI	GKGCMC	1 cut(s)	130
BseXI	GCAGC	5 cut(s)	673, 1237, 1318, 1354, 1947
BsgI	GTGCAG	1 cut(s)	794
Bsh1236I	CGCG	1 cut(s)	1271
BshFI	GGCC	2 cut(s)	1299, 2328
BshVI	ATCGAT	1 cut(s)	2206
BsiHKAI	GWGCWC	1 cut(s)	1064
BsiHKCI	CYCGRG	1 cut(s)	2250
BsiSI	CCGG	1 cut(s)	2288
BslFI	GGGAC	5 cut(s)	767, 932, 1808, 1875, 2201
BslI	CCNNNNNNNGG	8 cut(s)	143, 504, 791, 858, 870, 1979, 2111, 2530
BsmFI	GGGAC	5 cut(s)	767, 932, 1808, 1875, 2201
BsmI	GAATGC	1 cut(s)	744
BsnI	GGCC	2 cut(s)	1299, 2328
BsoBI	CYCGRG	1 cut(s)	2250
Bsp1286I	GDGCHC	4 cut(s)	130, 158, 258, 1064
Bsp1407I	TGTACA	1 cut(s)	231
Bsp143I	GATC	9 cut(s)	409, 507, 653, 679, 1396, 2179, 2203, 2207, 2362
Bsp1720I	GCTNAGC	1 cut(s)	2118
Bsp19I	CCATGG	1 cut(s)	614
BspACI	CCGC	5 cut(s)	715, 1334, 1588, 2144, 2302
BspANI	GGCC	2 cut(s)	1299, 2328
BspDI	ATCGAT	1 cut(s)	2206
BspFNI	CGCG	1 cut(s)	1271
BspHI	TCATGA	1 cut(s)	691
BspLI	GGNNCC	9 cut(s)	96, 195, 397, 782, 783, 1581, 1796, 1797, 2189
BspMAI	CTGCAG	1 cut(s)	885
BspPI	GGATC	4 cut(s)	515, 1391, 2211, 2357
BspQI	GCTCTTC	1 cut(s)	432
BspTI	CTTAAG	2 cut(s)	17, 1027
BsrDI	GCAATG	1 cut(s)	1416
BsrGI	TGTACA	1 cut(s)	231
BsrI	ACTGG	9 cut(s)	166, 796, 1519, 1774, 1914, 2284, 2315, 2329, 2347
BssECI	CCNNGG	3 cut(s)	298, 614, 784
BssMI	GATC	9 cut(s)	409, 507, 653, 679, 1396, 2179, 2203, 2207, 2362
BssNAI	GTATAC	1 cut(s)	1512
BssNI	GRCGYC	1 cut(s)	2638
BssT1I	CCWWGG	1 cut(s)	614
Bst1107I	GTATAC	1 cut(s)	1512
Bst2UI	CCWGG	4 cut(s)	144, 786, 1905, 2525
Bst4CI	ACNGT	4 cut(s)	802, 2214, 2336, 2373
Bst6I	CTCTTC	2 cut(s)	432, 1028
BstACI	GRCGYC	1 cut(s)	2638
BstAFI	CTTAAG	2 cut(s)	17, 1027
BstAPI	GCANNNNNTGC	1 cut(s)	1855
BstAUI	TGTACA	1 cut(s)	231
BstC8I	GCNNGC	1 cut(s)	1035
BstDSI	CCRYGG	1 cut(s)	614
BstEII	GGTNACC	1 cut(s)	1704
BstFNI	CGCG	1 cut(s)	1271
BstHHI	GCGC	1 cut(s)	2406
BstKTI	GATC	9 cut(s)	412, 510, 656, 682, 1399, 2182, 2206, 2210, 2365
BstMBI	GATC	9 cut(s)	409, 507, 653, 679, 1396, 2179, 2203, 2207, 2362
BstMWI	GCNNNNNNNGC	4 cut(s)	422, 712, 976, 1855
BstNI	CCWGG	4 cut(s)	144, 786, 1905, 2525
BstNSI	RCATGY	3 cut(s)	892, 1169, 1880
BstPI	GGTNACC	1 cut(s)	1704
BstSCI	CCNGG	4 cut(s)	142, 784, 1903, 2523
BstSFI	CTRYAG	1 cut(s)	881
BstSLI	GKGCMC	1 cut(s)	130
BstUI	CGCG	1 cut(s)	1271
BstV1I	GCAGC	5 cut(s)	673, 1237, 1318, 1354, 1947
BstV2I	GAAGAC	2 cut(s)	347, 1454
BstX2I	RGATCY	3 cut(s)	507, 679, 2179
BstXI	CCANNNNNNTGG	2 cut(s)	1307, 2279
BstYI	RGATCY	3 cut(s)	507, 679, 2179
BstZ17I	GTATAC	1 cut(s)	1512
Bsu15I	ATCGAT	1 cut(s)	2206
Bsu36I	CCTNAGG	2 cut(s)	99, 521
BsuRI	GGCC	2 cut(s)	1299, 2328
BsuTUI	ATCGAT	1 cut(s)	2206
BtgI	CCRYGG	1 cut(s)	614
BtgZI	GCGATG	1 cut(s)	1252
BtsI	GCAGTG	1 cut(s)	1062
BtsIMutI	CAGTG	6 cut(s)	128, 782, 1062, 1781, 2277, 2308
Cac8I	GCNNGC	1 cut(s)	1035
CaiI	CAGNNNCTG	1 cut(s)	791
CciI	TCATGA	1 cut(s)	691
CfoI	GCGC	1 cut(s)	2406
ClaI	ATCGAT	1 cut(s)	2206
CseI	GACGC	3 cut(s)	463, 695, 821
CsiI	ACCWGGT	1 cut(s)	1903
Csp6I	GTAC	6 cut(s)	232, 789, 1163, 1429, 2261, 2337
CspCI	CAANNNNNGTGG	2 cut(s)	1572, 1607
CviQI	GTAC	6 cut(s)	232, 789, 1163, 1429, 2261, 2337
DpnI	GATC	9 cut(s)	411, 509, 655, 681, 1398, 2181, 2205, 2209, 2364
DpnII	GATC	9 cut(s)	409, 507, 653, 679, 1396, 2179, 2203, 2207, 2362
DraIII	CACNNNGTG	1 cut(s)	2299
Eam1104I	CTCTTC	2 cut(s)	432, 1028
EarI	CTCTTC	2 cut(s)	432, 1028
Eco130I	CCWWGG	1 cut(s)	614
Eco24I	GRGCYC	2 cut(s)	158, 258
Eco57I	CTGAAG	2 cut(s)	2249, 2397
Eco81I	CCTNAGG	2 cut(s)	99, 521
Eco88I	CYCGRG	1 cut(s)	2250
Eco91I	GGTNACC	1 cut(s)	1704
EcoO109I	RGGNCCY	3 cut(s)	781, 1795, 1868
EcoO65I	GGTNACC	1 cut(s)	1704
EcoRI	GAATTC	2 cut(s)	1112, 2603
EcoRII	CCWGG	4 cut(s)	142, 784, 1903, 2523
EcoT14I	CCWWGG	1 cut(s)	614
EcoT22I	ATGCAT	2 cut(s)	385, 1882
EcoT38I	GRGCYC	2 cut(s)	158, 258
ErhI	CCWWGG	1 cut(s)	614
FaqI	GGGAC	5 cut(s)	767, 932, 1808, 1875, 2201
FauI	CCCGC	1 cut(s)	1581
FauNDI	CATATG	1 cut(s)	311
FblI	GTMKAC	2 cut(s)	1511, 2635
Fnu4HI	GCNGC	6 cut(s)	662, 1251, 1332, 1368, 1961, 2144
FriOI	GRGCYC	2 cut(s)	158, 258
Fsp4HI	GCNGC	6 cut(s)	662, 1251, 1332, 1368, 1961, 2144
FspBI	CTAG	5 cut(s)	1277, 1292, 1872, 1974, 2319
GlaI	GCGC	1 cut(s)	2405
GluI	GCNGC	6 cut(s)	662, 1251, 1332, 1368, 1961, 2144
HaeIII	GGCC	2 cut(s)	1299, 2328
HapII	CCGG	1 cut(s)	2288
HgaI	GACGC	3 cut(s)	463, 695, 821
HhaI	GCGC	1 cut(s)	2406
Hin1I	GRCGYC	1 cut(s)	2638
Hin6I	GCGC	1 cut(s)	2404
HinP1I	GCGC	1 cut(s)	2404
HpaII	CCGG	1 cut(s)	2288
HphI	GGTGA	6 cut(s)	68, 188, 298, 580, 1698, 1893
Hpy166II	GTNNAC	6 cut(s)	861, 1126, 1431, 1512, 2339, 2636
Hpy188I	TCNGA	9 cut(s)	294, 453, 711, 843, 1059, 1174, 1485, 2416, 2440
Hpy8I	GTNNAC	6 cut(s)	861, 1126, 1431, 1512, 2339, 2636
Hpy99I	CGWCG	1 cut(s)	1792
HpyAV	CCTTC	9 cut(s)	117, 712, 909, 1203, 1631, 1802, 2048, 2105, 2421
HpyCH4III	ACNGT	4 cut(s)	802, 2214, 2336, 2373
HpyCH4IV	ACGT	2 cut(s)	1716, 2638
HpyF10VI	GCNNNNNNNGC	4 cut(s)	422, 712, 976, 1855
HpySE526I	ACGT	2 cut(s)	1716, 2638
Hsp92I	GRCGYC	1 cut(s)	2638
HspAI	GCGC	1 cut(s)	2404
KflI	GGGWCCC	2 cut(s)	781, 1795
Kzo9I	GATC	9 cut(s)	409, 507, 653, 679, 1396, 2179, 2203, 2207, 2362
LguI	GCTCTTC	1 cut(s)	432
LmnI	GCTCC	4 cut(s)	100, 1846, 2165, 2245
Lsp1109I	GCAGC	5 cut(s)	673, 1237, 1318, 1354, 1947
LweI	GCATC	9 cut(s)	370, 629, 702, 885, 1972, 2002, 2130, 2131, 2488
MabI	ACCWGGT	1 cut(s)	1903
MaeI	CTAG	5 cut(s)	1277, 1292, 1872, 1974, 2319
MaeII	ACGT	2 cut(s)	1716, 2638
MaeIII	GTNAC	7 cut(s)	560, 586, 1524, 1704, 1899, 2081, 2306
MalI	GATC	9 cut(s)	411, 509, 655, 681, 1398, 2181, 2205, 2209, 2364
MboI	GATC	9 cut(s)	409, 507, 653, 679, 1396, 2179, 2203, 2207, 2362
MfeI	CAATTG	2 cut(s)	198, 1626
MflI	RGATCY	3 cut(s)	507, 679, 2179
MhlI	GDGCHC	4 cut(s)	130, 158, 258, 1064
MlyI	GAGTC	4 cut(s)	142, 564, 948, 2314
MmeI	TCCRAC	2 cut(s)	457, 2511
Mph1103I	ATGCAT	2 cut(s)	385, 1882
MroXI	GAANNNNTTC	2 cut(s)	426, 1760
MseI	TTAA	9 cut(s)	18, 45, 171, 443, 603, 731, 744, 1028, 2006
MslI	CAYNNNNRTG	4 cut(s)	816, 1007, 2196, 2619
MspCI	CTTAAG	2 cut(s)	17, 1027
MspI	CCGG	1 cut(s)	2288
MspR9I	CCNGG	4 cut(s)	144, 786, 1905, 2525
MunI	CAATTG	2 cut(s)	198, 1626
Mva1269I	GAATGC	1 cut(s)	744
MvaI	CCWGG	4 cut(s)	144, 786, 1905, 2525
MvnI	CGCG	1 cut(s)	1271
MwoI	GCNNNNNNNGC	4 cut(s)	422, 712, 976, 1855
NcoI	CCATGG	1 cut(s)	614
NdeI	CATATG	1 cut(s)	311
NdeII	GATC	9 cut(s)	409, 507, 653, 679, 1396, 2179, 2203, 2207, 2362
NlaIV	GGNNCC	9 cut(s)	96, 195, 397, 782, 783, 1581, 1796, 1797, 2189
NmuCI	GTSAC	5 cut(s)	560, 586, 1704, 1899, 2306
NsiI	ATGCAT	2 cut(s)	385, 1882
NspI	RCATGY	3 cut(s)	892, 1169, 1880
PagI	TCATGA	1 cut(s)	691
PciSI	GCTCTTC	1 cut(s)	432
PctI	GAATGC	1 cut(s)	744
PdmI	GAANNNNTTC	2 cut(s)	426, 1760
PfeI	GAWTC	6 cut(s)	59, 1146, 1283, 1496, 1828, 2026
PflMI	CCANNNNNTGG	3 cut(s)	504, 791, 2530
PkrI	GCNGC	6 cut(s)	663, 1252, 1333, 1369, 1962, 2145
PleI	GAGTC	4 cut(s)	141, 563, 948, 2313
PpsI	GAGTC	4 cut(s)	141, 563, 948, 2313
PpuMI	RGGWCCY	3 cut(s)	781, 1795, 1868
PsiI	TTATAA	1 cut(s)	1050
Psp5II	RGGWCCY	3 cut(s)	781, 1795, 1868
Psp6I	CCWGG	4 cut(s)	142, 784, 1903, 2523
PspEI	GGTNACC	1 cut(s)	1704
PspGI	CCWGG	4 cut(s)	142, 784, 1903, 2523
PspN4I	GGNNCC	9 cut(s)	96, 195, 397, 782, 783, 1581, 1796, 1797, 2189
PspPPI	RGGWCCY	3 cut(s)	781, 1795, 1868
PstI	CTGCAG	1 cut(s)	885
PstNI	CAGNNNCTG	1 cut(s)	791
PsuI	RGATCY	3 cut(s)	507, 679, 2179
RsaI	GTAC	6 cut(s)	233, 790, 1164, 1430, 2262, 2338
RsaNI	GTAC	6 cut(s)	232, 789, 1163, 1429, 2261, 2337
RseI	CAYNNNNRTG	4 cut(s)	816, 1007, 2196, 2619
SapI	GCTCTTC	1 cut(s)	432
SaqAI	TTAA	9 cut(s)	18, 45, 171, 443, 603, 731, 744, 1028, 2006
SatI	GCNGC	6 cut(s)	662, 1251, 1332, 1368, 1961, 2144
Sau3AI	GATC	9 cut(s)	409, 507, 653, 679, 1396, 2179, 2203, 2207, 2362
SchI	GAGTC	4 cut(s)	142, 564, 948, 2314
ScrFI	CCNGG	4 cut(s)	144, 786, 1905, 2525
SduI	GDGCHC	4 cut(s)	130, 158, 258, 1064
SexAI	ACCWGGT	1 cut(s)	1903
SfaNI	GCATC	9 cut(s)	370, 629, 702, 885, 1972, 2002, 2130, 2131, 2488
SfcI	CTRYAG	1 cut(s)	881
SmiMI	CAYNNNNRTG	4 cut(s)	816, 1007, 2196, 2619
SmlI	CTYRAG	6 cut(s)	17, 854, 1027, 1529, 1765, 2384
SmoI	CTYRAG	6 cut(s)	17, 854, 1027, 1529, 1765, 2384
SsiI	CCGC	5 cut(s)	715, 1334, 1588, 2144, 2302
SspI	AATATT	1 cut(s)	1178
SspMI	CTAG	5 cut(s)	1277, 1292, 1872, 1974, 2319
StyD4I	CCNGG	4 cut(s)	142, 784, 1903, 2523
StyI	CCWWGG	1 cut(s)	614
TaaI	ACNGT	4 cut(s)	802, 2214, 2336, 2373
TaiI	ACGT	2 cut(s)	1719, 2641
TaqI	TCGA	4 cut(s)	1073, 1949, 2206, 2563
TatI	WGTACW	4 cut(s)	231, 1428, 2260, 2336
TauI	GCSGC	1 cut(s)	2146
TfiI	GAWTC	6 cut(s)	59, 1146, 1283, 1496, 1828, 2026
Tru1I	TTAA	9 cut(s)	18, 45, 171, 443, 603, 731, 744, 1028, 2006
Tru9I	TTAA	9 cut(s)	18, 45, 171, 443, 603, 731, 744, 1028, 2006
TscAI	CASTG	6 cut(s)	135, 782, 1069, 1781, 2284, 2315
TseFI	GTSAC	5 cut(s)	560, 586, 1704, 1899, 2306
TseI	GCWGC	5 cut(s)	661, 1250, 1331, 1367, 1960
Tsp45I	GTSAC	5 cut(s)	560, 586, 1704, 1899, 2306
TspGWI	ACGGA	2 cut(s)	548, 1776
TspRI	CASTG	6 cut(s)	135, 782, 1069, 1781, 2284, 2315
Van91I	CCANNNNNTGG	3 cut(s)	504, 791, 2530
Vha464I	CTTAAG	2 cut(s)	17, 1027
XapI	RAATTY	5 cut(s)	901, 1087, 1112, 2431, 2603
XceI	RCATGY	3 cut(s)	892, 1169, 1880
XcmI	CCANNNNNNNNNTGG	1 cut(s)	774
XmiI	GTMKAC	2 cut(s)	1511, 2635
XmnI	GAANNNNTTC	2 cut(s)	426, 1760
XspI	CTAG	5 cut(s)	1277, 1292, 1872, 1974, 2319
ZraI	GACGTC	1 cut(s)	2639
Zsp2I	ATGCAT	2 cut(s)	385, 1882

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.