Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0013522

Physical Location & Seq

Genomic Coordinates Forward (+)

18510728 .. 18516849

Gene Structure 6122 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000012408

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2763 bp

ATGGGCCTCATATTGGGAAACCTGGGCCGTGTCTTGGCCCAGCCCAAAGTGAAATTTGATTGCTTTGAACTCTTCTTTTCGGGCTGTCAATTGGGTGGAGTTGTCCGTCGAATGGACAGGCTTTTTAAGTGGCGTGGTGAATCATCTTTGACAGCATCATTGCTTAGAGATGCGGCTCCTGAGGTTGAATTATCTGCGTATGGAAGGGCACCGAGTCCAAGTCCCGGCAGCGAGAGCCCAACTGGGCTTCTTAATGGCGAGAGTGTAAATGTGGAACCAATTGCTGATTTGGACCTGTTCTTTGAAAGGCTGTACAGCTACTATTGTGATAAAGGCCTCTGGTGTATTGTCATAAAGTGGATAGTAGAGCTTCTCAGCTTGGGTTTCACCATATGCTTCTCTGGGTTCTTCTTATTATTTGTTGATTGGAATGGTCTTCGTAATGCGAAGTGTGGGATGGATGCATTTCAATCTGGAACTAAGCCCTGTGATCTTGCTACTGAAGCTCTTCATCAGCACCCATTAAGCCCTCTGACACTTTCCAAAGCTATAATTGTTGGATATTTGTTTATATTTTCCATTTATTGGATCTTCTGTTTTCTGAGGTTTTTCGCTCAACTGCGAGATACTTTGGGAGTCCGTCACTTCTATCACCACAGCCTCCATGTCACCGACAATGAAATTAAGACCATGCCATGGGCATCAATTCTGGAGAAGGTTGTCCAGCTACAAAGATCACAGCAGCTTTGTGTGGTCAAAGACCTTTCTGCTCATGATGTGGTTATGCGTTTGATGCGGAAGGAGAACTATTTAATTGGAATGCTTAACAAGGGTGTTCTTGCTTTTCCAATCTCACAGTGGGTCCCAGGTAGTGGCCCAACTGTTAAATTGCCCTCGGATGGAAAGCGAGAGCGTCTAATTCTGACAAAAACCCTTGAGTGGACTTTAAATTGGTGCATACTGCAGAGCATGTTTGATCGGAATTTTTGTGTTAGAAGGGACTTTGTATCAAATCCAAGAACATTACAGAAAAGACTTATGGTAGTTGGGCTTGCTATGCTTCTCCTCTCGCCATTTCTTGTCATATTCATGCTGGTATATCTCTTCTTAAGGCATGCAGAACAATTTTATAATCATCCGAGCACTGCTTCTTCTAGAAGATGGTCAAATTTGTCAAGGTGGATGTTTAGGGAATTCAATGAGGTGGACCACTTGTTCAAACACAGAATCAATAGCAGTTTGGTACATGCTTCTGAATATTTGAAGCAATTTCCTTCTCCTATTATATCCATTATAGCAAAATTCATCTCTTTTGTGTCTGGTGGCTTTGCTGCTATTTTAATCATCATTGCGTTCCTAGAGGAATCTCTGCTAGAAGGCCATATATTTGGTCGCAACTTGTTCTGGTATGCTGCTGTTTTTGGAACTATAACAGCTATTAGCAGGGCTGCAATTAGTGATGAGCTTCTGGTCCTTGATCCAGAGGGGGCAATGTCTATGGTGGTTCAATACACACATTATATGCCCAAGACATGGCGTGGCAAAGAGAATACTGAGGGTGTTCGGATAGAGTTTGAATCCCTGTTTCAGTATACTGGAATGATGTTACTTGAGGAGATGGCCTCTATCTTTCTCACTCCATATTTACTTATATTTGTTGTTCCAAAGCGGGTGGATGACATTTTAGAGTTTATTGCAGAATTCACAATTGATGTTGAAGGTGTTGGTCATGTTTGCAGTTTTAGTGCCTTTGATTTTCAAAAACATGGTAATAGAAACTATGGGTCACCTTTCAATGTACCTCGCTCACAGAGGAGTTCTCAGGGTAAAATGGAGAAATCATTCTTGAGTTTCCAGAGTAGCTATCCTTCGTGGGACCCAAATGCACAAGGACATCAGTTTCTTTTAAATCTTAAAACTTTCAGGGAGCAAAAGTTGCAGGGACAAGAAACTAGACATGCATATTCTCCTCAGAGAATGTCACCGGGTAGCCCCAGTTTGAGAACTTTTGGTGGCATGAACTATCTCTCAAGGGACAGGCTACATCATAATCCTAGAACTGGCTATCAATTAGGTTCTCTGTGGTTAATTGATGCAGATCAGAAGAATCATCCATACCTTCTTGATTGGTATTACACCTCTGCCCCACACCATACAACGAGTTACAAGAGGGATATTCTGGAAGAACCATTTGAAGGTGCTGAGCAGCAGTCTGTGGATTGGATGCCACCCAACTTCACAGACAATGGAGCAAGATTTGAAGATCTTTGGGACCATCATTATGAGGATCGATCTCGGTCTTATCTGGGGGCTTCTACATCAGCCCCTTTCCCCCGAGATAATGTACTTCAGCATCACGATACTGGTAATCTGGCACACCAAACTCGGAGTCACTGGTGGGCTAGAACTGGCCCTCATGGTACACAGCCCCAGTCAAGTTTTCTTGATCCTCCACAGTCAAGTTTTCTTGAGCCTCCTAATTTCATGCGCCGGCCTTCAGATAATTTTTATGAAAATTTCTCAGATAGAAGCTTAGAGGAACAGGATGAAGAACAGGAACAGGAACAGAATGAAAGACAGGATGCAGAACAAGATGTAGAGCAGGAACAGCACTTGGATTGGAGGAGGAACTACCATAACTTATCTCGAACTACTTATATGGATGACTTAGACTTAGAGGCAGGAAAATTTAATCTTCATTTTGATGATGTATATAGTAGACGTCCCGAAACCCCCAAAGATATGACCACCAAGCTTCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000045 GO:0000407 GO:0000422 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005776 GO:0006914 GO:0006950 GO:0006952 GO:0006996 GO:0007005 GO:0007033 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0016043 GO:0016236 GO:0022411 GO:0022607 GO:0033036 GO:0034497 GO:0034613 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044248 GO:0044424 GO:0044444 GO:0044464 GO:0044804 GO:0044805 GO:0050832 GO:0050896 GO:0051179 GO:0051641 GO:0051704 GO:0051707 GO:0061726 GO:0061919 GO:0070727 GO:0070925 GO:0071840 GO:0098542 GO:1903008 GO:1905037

KEGG Pathways

Metabolic & Signaling

ko04136 ko04137 ko04138 ko04140 map04136 map04137 map04138 map04140

Pfam Domains

Protein Families

APG9

Protein Analysis

921

Amino Acids

106.4

Weight (kDa)

6.23

Isoelectric Point (pI)

53.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ATG9	PF04109	91 - 585	1.2e-166	Autophagy protein ATG9

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013522)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31260
fragaria_vesca	FvH4_2g21710
malus_domestica	MD05G1199600.v1.1 MD10G1185900.v1.1
prunus_persica	Prupe.8G225400_v2.0.a1 Prupe.8G225400_v2.0.a1
pyrus_communis	pycom05g18600 pycom10g16080
rosa_chinensis	RchiOBHm_Chr6g0288391
rosa_laevigata	RLG00000012408
rosa_multiflora	Rmu_sc0001038.1_g000011
rosa_roxburghii	Rroxscaffold_7G00180100
rosa_rugosa	Rorug06G0196200
rosa_samantha	Rh6AG307100 Rh6BG313100 Rh6CG320900 Rh6DG306300
rosa_wichuraiana	Rw6G026570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1131
AatII	GACGTC	1 cut(s)	2725
AccB1I	GGYRCC	1 cut(s)	208
AccB7I	CCANNNNNTGG	4 cut(s)	585, 696, 872, 1533
AccI	GTMKAC	2 cut(s)	1592, 2719
AciI	CCGC	3 cut(s)	173, 796, 1669
AclWI	GGATC	4 cut(s)	596, 1472, 2295, 2441
AcsI	RAATTY	8 cut(s)	53, 982, 1168, 1193, 1301, 1700, 2515, 2687
AcuI	CTGAAG	4 cut(s)	522, 2333, 2481, 2741
AcyI	GRCGYC	1 cut(s)	2722
AfaI	GTAC	5 cut(s)	314, 1245, 1800, 2346, 2422
AflII	CTTAAG	1 cut(s)	1108
AjnI	CCWGG	2 cut(s)	21, 865
AloI	GAACNNNNNNTCC	2 cut(s)	1199, 1231
Alw21I	GWGCWC	1 cut(s)	1145
AlwI	GGATC	4 cut(s)	596, 1472, 2295, 2441
Ama87I	CYCGRG	1 cut(s)	2334
AoxI	GGCC	9 cut(s)	4, 25, 36, 334, 874, 1378, 1620, 2410, 2492
ApeKI	GCWGC	6 cut(s)	228, 742, 1331, 1412, 1448, 2206
ApoI	RAATTY	8 cut(s)	53, 982, 1168, 1193, 1301, 1700, 2515, 2687
ArsI	GACNNNNNNTTYG	4 cut(s)	284, 316, 2374, 2406
Asp700I	GAANNNNTTC	2 cut(s)	507, 1841
AspLEI	GCGC	1 cut(s)	2490
AsuC2I	CCSGG	2 cut(s)	225, 1986
AsuHPI	GGTGA	6 cut(s)	149, 379, 644, 661, 1779, 1974
AvaI	CYCGRG	1 cut(s)	2334
AvaII	GGWCC	6 cut(s)	292, 862, 1207, 1471, 1876, 2272
AxyI	CCTNAGG	1 cut(s)	180
BaeGI	GKGCMC	1 cut(s)	211
BanI	GGYRCC	1 cut(s)	208
BanII	GRGCYC	1 cut(s)	239
BarI	GAAGNNNNNNTAC	2 cut(s)	1852, 1884
BbsI	GAAGAC	1 cut(s)	428
Bbv12I	GWGCWC	1 cut(s)	1145
BbvI	GCAGC	6 cut(s)	240, 754, 1318, 1399, 1435, 2218
BccI	CCATC	5 cut(s)	451, 893, 1155, 1612, 2283
BceAI	ACGGC	1 cut(s)	12
BciT130I	CCWGG	2 cut(s)	23, 867
BcnI	CCSGG	2 cut(s)	225, 1986
BfaI	CTAG	6 cut(s)	1155, 1358, 1373, 1953, 2055, 2403
BfmI	CTRYAG	1 cut(s)	962
BfrI	CTTAAG	1 cut(s)	1108
BglII	AGATCT	1 cut(s)	2263
BisI	GCNGC	7 cut(s)	174, 229, 743, 1332, 1413, 1449, 2207
BlpI	GCTNAGC	1 cut(s)	2202
BlsI	GCNGC	7 cut(s)	175, 230, 744, 1333, 1414, 1450, 2208
Bme1390I	CCNGG	4 cut(s)	23, 225, 867, 1986
Bme18I	GGWCC	6 cut(s)	292, 862, 1207, 1471, 1876, 2272
BmeT110I	CYCGRG	1 cut(s)	2334
BmiI	GGNNCC	8 cut(s)	177, 210, 276, 863, 864, 1877, 1878, 2273
BmrFI	CCNGG	4 cut(s)	23, 225, 867, 1986
BmrI	ACTGGG	3 cut(s)	252, 1989, 2425
BmsI	GCATC	9 cut(s)	160, 164, 451, 710, 783, 2083, 2214, 2362, 2572
BmuI	ACTGGG	3 cut(s)	252, 1989, 2425
BpiI	GAAGAC	1 cut(s)	428
BplI	GAGNNNNNCTC	4 cut(s)	1607, 1639, 1804, 1836
BpmI	CTGGAG	1 cut(s)	731
Bpu1102I	GCTNAGC	1 cut(s)	2202
BpuEI	CTTGAG	5 cut(s)	956, 1631, 1867, 2014, 2489
BpuMI	CCSGG	2 cut(s)	225, 1986
Bsa29I	ATCGAT	1 cut(s)	2290
BsaBI	GATNNNNATC	1 cut(s)	2097
BsaHI	GRCGYC	1 cut(s)	2722
BsaJI	CCNNGG	4 cut(s)	22, 695, 865, 894
BsaXI	ACNNNNNCTCC	2 cut(s)	1919, 1949
Bse118I	RCCGGY	1 cut(s)	2490
Bse1I	ACTGG	8 cut(s)	247, 1600, 1995, 2065, 2368, 2399, 2413, 2431
Bse21I	CCTNAGG	1 cut(s)	180
Bse3DI	GCAATG	3 cut(s)	158, 1347, 1497
Bse8I	GATNNNNATC	1 cut(s)	2097
BseBI	CCWGG	2 cut(s)	23, 867
BseCI	ATCGAT	1 cut(s)	2290
BseDI	CCNNGG	4 cut(s)	22, 695, 865, 894
BseJI	GATNNNNATC	1 cut(s)	2097
BseMI	GCAATG	3 cut(s)	158, 1347, 1497
BseMII	CTCAG	8 cut(s)	171, 388, 593, 1545, 1835, 1985, 2193, 2535
BseNI	ACTGG	8 cut(s)	247, 1600, 1995, 2065, 2368, 2399, 2413, 2431
BseRI	GAGGAG	5 cut(s)	1055, 1628, 1828, 1959, 2638
BseSI	GKGCMC	1 cut(s)	211
BseXI	GCAGC	6 cut(s)	240, 754, 1318, 1399, 1435, 2218
BseYI	CCCAGC	1 cut(s)	39
BshFI	GGCC	9 cut(s)	6, 27, 38, 336, 876, 1380, 1622, 2412, 2494
BshNI	GGYRCC	1 cut(s)	208
BshVI	ATCGAT	1 cut(s)	2290
BsiHKAI	GWGCWC	1 cut(s)	1145
BsiHKCI	CYCGRG	1 cut(s)	2334
BsiSI	CCGG	3 cut(s)	225, 1985, 2491
BslFI	GGGAC	8 cut(s)	207, 848, 1013, 1889, 1956, 2048, 2285, 2709
BsmFI	GGGAC	8 cut(s)	207, 848, 1013, 1889, 1956, 2048, 2285, 2709
BsmI	GAATGC	1 cut(s)	825
BsnI	GGCC	9 cut(s)	6, 27, 38, 336, 876, 1380, 1622, 2412, 2494
BsoBI	CYCGRG	1 cut(s)	2334
Bsp1286I	GDGCHC	3 cut(s)	211, 239, 1145
Bsp1407I	TGTACA	1 cut(s)	312
Bsp1720I	GCTNAGC	1 cut(s)	2202
Bsp19I	CCATGG	1 cut(s)	695
BspACI	CCGC	3 cut(s)	173, 796, 1669
BspANI	GGCC	9 cut(s)	6, 27, 38, 336, 876, 1380, 1622, 2412, 2494
BspCNI	CTCAG	8 cut(s)	172, 387, 594, 1546, 1834, 1984, 2194, 2534
BspDI	ATCGAT	1 cut(s)	2290
BspHI	TCATGA	1 cut(s)	772
BspLI	GGNNCC	8 cut(s)	177, 210, 276, 863, 864, 1877, 1878, 2273
BspMAI	CTGCAG	1 cut(s)	966
BspPI	GGATC	4 cut(s)	596, 1472, 2295, 2441
BspQI	GCTCTTC	1 cut(s)	513
BspT107I	GGYRCC	1 cut(s)	208
BspTI	CTTAAG	1 cut(s)	1108
BsrDI	GCAATG	3 cut(s)	158, 1347, 1497
BsrFI	RCCGGY	1 cut(s)	2490
BsrGI	TGTACA	1 cut(s)	312
BsrI	ACTGG	8 cut(s)	247, 1600, 1995, 2065, 2368, 2399, 2413, 2431
BssAI	RCCGGY	1 cut(s)	2490
BssECI	CCNNGG	4 cut(s)	22, 695, 865, 894
BssNAI	GTATAC	1 cut(s)	1593
BssNI	GRCGYC	1 cut(s)	2722
BssT1I	CCWWGG	1 cut(s)	695
Bst1107I	GTATAC	1 cut(s)	1593
Bst2UI	CCWGG	2 cut(s)	23, 867
Bst4CI	ACNGT	3 cut(s)	858, 883, 2457
Bst6I	CTCTTC	3 cut(s)	77, 513, 1109
BstACI	GRCGYC	1 cut(s)	2722
BstAFI	CTTAAG	1 cut(s)	1108
BstAPI	GCANNNNNTGC	1 cut(s)	1936
BstAUI	TGTACA	1 cut(s)	312
BstC8I	GCNNGC	3 cut(s)	1053, 1116, 2492
BstDSI	CCRYGG	1 cut(s)	695
BstEII	GGTNACC	1 cut(s)	1785
BstHHI	GCGC	1 cut(s)	2490
BstMWI	GCNNNNNNNGC	6 cut(s)	234, 503, 793, 1057, 1936, 2608
BstNI	CCWGG	2 cut(s)	23, 867
BstNSI	RCATGY	4 cut(s)	973, 1118, 1250, 1961
BstPI	GGTNACC	1 cut(s)	1785
BstSCI	CCNGG	4 cut(s)	21, 223, 865, 1984
BstSFI	CTRYAG	1 cut(s)	962
BstSLI	GKGCMC	1 cut(s)	211
BstV1I	GCAGC	6 cut(s)	240, 754, 1318, 1399, 1435, 2218
BstV2I	GAAGAC	1 cut(s)	428
BstX2I	RGATCY	2 cut(s)	588, 2263
BstXI	CCANNNNNNTGG	1 cut(s)	1388
BstYI	RGATCY	2 cut(s)	588, 2263
BstZ17I	GTATAC	1 cut(s)	1593
Bsu15I	ATCGAT	1 cut(s)	2290
Bsu36I	CCTNAGG	1 cut(s)	180
BsuRI	GGCC	9 cut(s)	6, 27, 38, 336, 876, 1380, 1622, 2412, 2494
BsuTUI	ATCGAT	1 cut(s)	2290
BtgI	CCRYGG	1 cut(s)	695
BtsI	GCAGTG	1 cut(s)	1143
BtsIMutI	CAGTG	3 cut(s)	863, 1143, 2392
Cac8I	GCNNGC	3 cut(s)	1053, 1116, 2492
CciI	TCATGA	1 cut(s)	772
CfoI	GCGC	1 cut(s)	2490
Cfr10I	RCCGGY	1 cut(s)	2490
ClaI	ATCGAT	1 cut(s)	2290
CseI	GACGC	1 cut(s)	902
Csp6I	GTAC	5 cut(s)	313, 1244, 1799, 2345, 2421
CspCI	CAANNNNNGTGG	2 cut(s)	1653, 1688
CviQI	GTAC	5 cut(s)	313, 1244, 1799, 2345, 2421
DraI	TTTAAA	2 cut(s)	948, 1908
Eam1104I	CTCTTC	3 cut(s)	77, 513, 1109
EarI	CTCTTC	3 cut(s)	77, 513, 1109
Eco130I	CCWWGG	1 cut(s)	695
Eco147I	AGGCCT	1 cut(s)	336
Eco24I	GRGCYC	1 cut(s)	239
Eco47I	GGWCC	6 cut(s)	292, 862, 1207, 1471, 1876, 2272
Eco57I	CTGAAG	4 cut(s)	522, 2333, 2481, 2741
Eco81I	CCTNAGG	1 cut(s)	180
Eco88I	CYCGRG	1 cut(s)	2334
Eco91I	GGTNACC	1 cut(s)	1785
EcoO109I	RGGNCCY	2 cut(s)	862, 1876
EcoO65I	GGTNACC	1 cut(s)	1785
EcoRI	GAATTC	2 cut(s)	1193, 1700
EcoRII	CCWGG	2 cut(s)	21, 865
EcoT14I	CCWWGG	1 cut(s)	695
EcoT22I	ATGCAT	2 cut(s)	466, 1963
EcoT38I	GRGCYC	1 cut(s)	239
ErhI	CCWWGG	1 cut(s)	695
FaqI	GGGAC	8 cut(s)	207, 848, 1013, 1889, 1956, 2048, 2285, 2709
FauI	CCCGC	1 cut(s)	1662
FauNDI	CATATG	1 cut(s)	392
FblI	GTMKAC	2 cut(s)	1592, 2719
Fnu4HI	GCNGC	7 cut(s)	174, 229, 743, 1332, 1413, 1449, 2207
FriOI	GRGCYC	1 cut(s)	239
Fsp4HI	GCNGC	7 cut(s)	174, 229, 743, 1332, 1413, 1449, 2207
FspBI	CTAG	6 cut(s)	1155, 1358, 1373, 1953, 2055, 2403
GlaI	GCGC	1 cut(s)	2489
GluI	GCNGC	7 cut(s)	174, 229, 743, 1332, 1413, 1449, 2207
GsaI	CCCAGC	1 cut(s)	43
GsuI	CTGGAG	1 cut(s)	731
HaeIII	GGCC	9 cut(s)	6, 27, 38, 336, 876, 1380, 1622, 2412, 2494
HapII	CCGG	3 cut(s)	225, 1985, 2491
HgaI	GACGC	1 cut(s)	902
HhaI	GCGC	1 cut(s)	2490
Hin1I	GRCGYC	1 cut(s)	2722
Hin6I	GCGC	1 cut(s)	2488
HinP1I	GCGC	1 cut(s)	2488
HindIII	AAGCTT	2 cut(s)	2530, 2753
HinfI	GANTC	8 cut(s)	140, 214, 636, 1227, 1364, 1577, 2107, 2389
HpaII	CCGG	3 cut(s)	225, 1985, 2491
HphI	GGTGA	6 cut(s)	149, 379, 644, 661, 1779, 1974
Hpy166II	GTNNAC	5 cut(s)	942, 1207, 1593, 2423, 2720
Hpy8I	GTNNAC	5 cut(s)	942, 1207, 1593, 2423, 2720
Hpy99I	CGWCG	1 cut(s)	111
HpyCH4III	ACNGT	3 cut(s)	858, 883, 2457
HpyCH4IV	ACGT	1 cut(s)	2722
HpyF10VI	GCNNNNNNNGC	6 cut(s)	234, 503, 793, 1057, 1936, 2608
HpySE526I	ACGT	1 cut(s)	2722
Hsp92I	GRCGYC	1 cut(s)	2722
HspAI	GCGC	1 cut(s)	2488
KflI	GGGWCCC	2 cut(s)	862, 1876
KroI	GCCGGC	1 cut(s)	2490
KroNI	GCCGGC	1 cut(s)	2492
LguI	GCTCTTC	1 cut(s)	513
LmnI	GCTCC	3 cut(s)	181, 1927, 2249
Lsp1109I	GCAGC	6 cut(s)	240, 754, 1318, 1399, 1435, 2218
LweI	GCATC	9 cut(s)	160, 164, 451, 710, 783, 2083, 2214, 2362, 2572
MaeI	CTAG	6 cut(s)	1155, 1358, 1373, 1953, 2055, 2403
MaeII	ACGT	1 cut(s)	2722
MaeIII	GTNAC	7 cut(s)	641, 667, 1605, 1785, 1980, 2162, 2390
MfeI	CAATTG	3 cut(s)	89, 279, 1707
MflI	RGATCY	2 cut(s)	588, 2263
MhlI	GDGCHC	3 cut(s)	211, 239, 1145
MlyI	GAGTC	3 cut(s)	223, 645, 2398
MmeI	TCCRAC	1 cut(s)	538
Mph1103I	ATGCAT	2 cut(s)	466, 1963
MroNI	GCCGGC	1 cut(s)	2490
MroXI	GAANNNNTTC	2 cut(s)	507, 1841
MslI	CAYNNNNRTG	3 cut(s)	1088, 2280, 2703
MspCI	CTTAAG	1 cut(s)	1108
MspI	CCGG	3 cut(s)	225, 1985, 2491
MspR9I	CCNGG	4 cut(s)	23, 225, 867, 1986
MunI	CAATTG	3 cut(s)	89, 279, 1707
Mva1269I	GAATGC	1 cut(s)	825
MvaI	CCWGG	2 cut(s)	23, 867
MwoI	GCNNNNNNNGC	6 cut(s)	234, 503, 793, 1057, 1936, 2608
NaeI	GCCGGC	1 cut(s)	2492
NciI	CCSGG	2 cut(s)	225, 1986
NcoI	CCATGG	1 cut(s)	695
NdeI	CATATG	1 cut(s)	392
NgoMIV	GCCGGC	1 cut(s)	2490
NlaIV	GGNNCC	8 cut(s)	177, 210, 276, 863, 864, 1877, 1878, 2273
NmuCI	GTSAC	5 cut(s)	641, 667, 1785, 1980, 2390
NsiI	ATGCAT	2 cut(s)	466, 1963
NspI	RCATGY	4 cut(s)	973, 1118, 1250, 1961
PaeI	GCATGC	1 cut(s)	1118
PagI	TCATGA	1 cut(s)	772
PceI	AGGCCT	1 cut(s)	336
PciSI	GCTCTTC	1 cut(s)	513
PctI	GAATGC	1 cut(s)	825
PdiI	GCCGGC	1 cut(s)	2492
PdmI	GAANNNNTTC	2 cut(s)	507, 1841
PfeI	GAWTC	5 cut(s)	140, 1227, 1364, 1577, 2107
PflMI	CCANNNNNTGG	4 cut(s)	585, 696, 872, 1533
PkrI	GCNGC	7 cut(s)	175, 230, 744, 1333, 1414, 1450, 2208
PleI	GAGTC	3 cut(s)	222, 644, 2397
PpsI	GAGTC	3 cut(s)	222, 644, 2397
PpuMI	RGGWCCY	2 cut(s)	862, 1876
PsiI	TTATAA	1 cut(s)	1131
Psp5II	RGGWCCY	2 cut(s)	862, 1876
Psp6I	CCWGG	2 cut(s)	21, 865
PspEI	GGTNACC	1 cut(s)	1785
PspFI	CCCAGC	1 cut(s)	39
PspGI	CCWGG	2 cut(s)	21, 865
PspN4I	GGNNCC	8 cut(s)	177, 210, 276, 863, 864, 1877, 1878, 2273
PspPPI	RGGWCCY	2 cut(s)	862, 1876
PstI	CTGCAG	1 cut(s)	966
PsuI	RGATCY	2 cut(s)	588, 2263
RsaI	GTAC	5 cut(s)	314, 1245, 1800, 2346, 2422
RsaNI	GTAC	5 cut(s)	313, 1244, 1799, 2345, 2421
RseI	CAYNNNNRTG	3 cut(s)	1088, 2280, 2703
SapI	GCTCTTC	1 cut(s)	513
SatI	GCNGC	7 cut(s)	174, 229, 743, 1332, 1413, 1449, 2207
SchI	GAGTC	3 cut(s)	223, 645, 2398
ScrFI	CCNGG	4 cut(s)	23, 225, 867, 1986
SduI	GDGCHC	3 cut(s)	211, 239, 1145
SfaNI	GCATC	9 cut(s)	160, 164, 451, 710, 783, 2083, 2214, 2362, 2572
SfcI	CTRYAG	1 cut(s)	962
SinI	GGWCC	6 cut(s)	292, 862, 1207, 1471, 1876, 2272
SmiMI	CAYNNNNRTG	3 cut(s)	1088, 2280, 2703
SmlI	CTYRAG	6 cut(s)	935, 1108, 1610, 1846, 2029, 2468
SmoI	CTYRAG	6 cut(s)	935, 1108, 1610, 1846, 2029, 2468
SphI	GCATGC	1 cut(s)	1118
SseBI	AGGCCT	1 cut(s)	336
SsiI	CCGC	3 cut(s)	173, 796, 1669
SspI	AATATT	1 cut(s)	1259
SspMI	CTAG	6 cut(s)	1155, 1358, 1373, 1953, 2055, 2403
StuI	AGGCCT	1 cut(s)	336
StyD4I	CCNGG	4 cut(s)	21, 223, 865, 1984
StyI	CCWWGG	1 cut(s)	695
TaaI	ACNGT	3 cut(s)	858, 883, 2457
TaiI	ACGT	1 cut(s)	2725
TaqI	TCGA	3 cut(s)	109, 2290, 2647
TaqII	GACCGA	1 cut(s)	2286
TatI	WGTACW	2 cut(s)	312, 2344
TauI	GCSGC	1 cut(s)	176
TfiI	GAWTC	5 cut(s)	140, 1227, 1364, 1577, 2107
TscAI	CASTG	3 cut(s)	863, 1150, 2399
TseFI	GTSAC	5 cut(s)	641, 667, 1785, 1980, 2390
TseI	GCWGC	6 cut(s)	228, 742, 1331, 1412, 1448, 2206
Tsp45I	GTSAC	5 cut(s)	641, 667, 1785, 1980, 2390
TspGWI	ACGGA	2 cut(s)	95, 629
TspRI	CASTG	3 cut(s)	863, 1150, 2399
Van91I	CCANNNNNTGG	4 cut(s)	585, 696, 872, 1533
Vha464I	CTTAAG	1 cut(s)	1108
VpaK11BI	GGWCC	6 cut(s)	292, 862, 1207, 1471, 1876, 2272
XapI	RAATTY	8 cut(s)	53, 982, 1168, 1193, 1301, 1700, 2515, 2687
XbaI	TCTAGA	1 cut(s)	1154
XceI	RCATGY	4 cut(s)	973, 1118, 1250, 1961
XcmI	CCANNNNNNNNNTGG	1 cut(s)	855
XmiI	GTMKAC	2 cut(s)	1592, 2719
XmnI	GAANNNNTTC	2 cut(s)	507, 1841
XspI	CTAG	6 cut(s)	1155, 1358, 1373, 1953, 2055, 2403
ZraI	GACGTC	1 cut(s)	2723
Zsp2I	ATGCAT	2 cut(s)	466, 1963

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.