Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0013522

Physical Location & Seq

Genomic Coordinates Reverse (-)

28003160 .. 28009504

Gene Structure 6345 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1185900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2625 bp

ATGATGTTCGGTAGGTTGAAGGGTGTGACGTCTGGCATTTTAAAGTGGAAGGGCGATTCATCTTTGACATCAGCGTTGCTTAGGGATGTGGCTCCTGAGGTTGAATTATCTGAATATGGTAGGGCACCGAGTCCTGGCAGTGAGAGCCCTTCAGGGCTTCTTAATGGTGAGAGTATAAATGTTGAACCAATTGCTGATTTGGACCTGTTCTTTGAAAGGCTCTACAGCTACTATTGTGAGAAAGGACTTTGGTGTATTATTATAAAGTGGATAGTTGAACTTCTAAGCTTGGGCTTCACTATATTGTTCTCAGGATTCTTCTTATTAAAAGTTGATTGGAATGGTCTTCGTAATGCAAAATGTGGGATGGATGCATTCGAATCTGGAATTAAGCCCTGTGACCTTGCTAAGGAAGCCCTTCATCAGCACCCATTAACCCCTCTAACTCTTTCCAAAGCCATCATTGTTGGATATTTGGGCATATTTTCCATTTATTTGGTCTTCTGTTTTTTGAGGTTTTTCTCTCAGTTAAGGGATACTTTGGGTGTCCGTCACTTCTATCACAGCAGTCTCCATGTCACAGACAATGAAATTCAGACGATGCCATGGGCATCAATTCTTGAAAAGGTTGTTCAGCTACAAAGGTCGCAGCCGCTCTGTGTGGTCAAAGATCTTTCTGCTCATGATGTGGTTATGCGATTGATGCGGAAGGAGAACTACTTGATTGGAATGCTTAACAAGGGGGTTCTTGCTTTCCCTATTTCACAGTGGGTTCCAGGTGCTGGTCCAACTGTCAAGTTTGGCTCAGATGGAAAGCAAGAACGATTAATACTGACAAAAACCCTTGAGTGGACCTTAAATTGGTGCATTCTGCAGAGCATGTTTGATCGAAATTTCTGTGTTACAAGGGACTTTATATCTAATCCAAGAACATTAAAGAAAAGACTTATGGTAGTTGGGTTTGTAATGCTTCTCCTTTCGCCATTTCTTGTCATATTCATGCTGGTATATCTCTTCCTGAGGCATGCAGAACAGTTTTATAACCATCCAAGCACAGCATCATCTCGAAGGTGGTCAAATTTGTCAAGGTGGATGTTTAGGGAATTTAATGAGGTGGACCATTTGTTTAAACACCGAATCACTAGCAGTGTAGTGCATGCTTCTGATTATTTGAAGCAATTTCCGTCTCCTATTATATCTATAGTAGCGAAATTCATCTCTTTTGTTTCTGGGGGCTTTGCTGCTATTCTAATCATCATCGCATTTCTGGAGGAATCTCTGCTAGAGGGCCATATATTTGGACGCAACTTGTTCTGGTATGCTGCTGTTTTTGGAACTATAACAGCTATCAGCAGGGCTGCCATTACCGATGAGCTGCTGGTCCTTGATCCAGAAGGGGCAATGTCTATGGTGGTACAATATACACATTATATGCCGAAGACATGGCGTGGCAAAGAGACTACTGAAAGGGTTCGAGTAGAGTTTGAAACCCTGTTTCAGTATACTGGAATGATGTTACTTGAGGAGATGGCCTCAATCTTCCTTGCTCCATATTTACTTATATTTGTTGTCCCGAAGAGGGTGGATGACATATTACAGTTTATTGCAGACTTCACGGTAGATGTTGAAGGTGTTGGTCATGTGTGTAGTTTTAGTGCCTTCGACTTCCCAAGACATGGTAATAGCAATTACGGGTCTCCTTACAATGTACCTCGCTCCCAGAGGAGTTCTCAGGGGAAAATGGAGAAATCGTTTTTGAGCTTCAAGAGTAACTATCCATCATGGGACCCAAATACTCAAGGACGTCTGTTTCTAAAACAGCTGAGAACTTTCCAGGAGCAAAAGTTGCAGGGACAAGGAACTAGACACACATATTCTCCTCCAAGAGGCTTTGGCGACAGGAACTTTTTATCACGGGAAAGGCCAACCCCTGGAACTGGCTATCACATGGGGTCACTGTGGTTAATTGACGCAGATCAAAAGAATCACCCCTATCTCCTTGATTGGTATTACACCTCTCGGCCACACCATACGGCAAGTTACACCGGGGACATTCCAGAAGAACCATTTGAAGCTACTGAGCAACATTCTGCTGATTGGAATCCAACCAACTTTCTAGATAATCAACTGAAATTTGAAGATCTTTGGGCTCAACACTATGATGATCGTTCACAGTCTAATATGGGTGCTTCTACGTCGGCACCTTTCCACCGAGAGAGTGTACTTCAGCATCATGACGCTGGTACTTCCGCACATCCAATGCAGAGTCATTGGTGGGCTAGAACTGGCCGACATGGTACACAGCCCCAGTCAAGTTTTCTCGAGCCTCCAGATTTCGCCCAACACGGCAGACAGCCCCAGTCAAGCTTTCTCGATCCTCCAAACTTCATGCGTCAGCCTTCAGATGATTATCACGGAAACTTCTCAGAAAGAAGCTTCAAGGAACGAGAACAAGAACTGGAACAAGAACAAGAACAAGAACAACGGTTGGATTGGAGGAACGATCAGAGTTTGTCCCGAACAAGGTATGTGGATGAGCTAGACTTAGAGGCAGGAGAGTTTGATCTTCATTTCGATGATGTGTATAGTACTAGACCTCCAGAAACTCCGGAAATAAAGCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000045 GO:0000407 GO:0000422 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005776 GO:0006914 GO:0006950 GO:0006952 GO:0006996 GO:0007005 GO:0007033 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0016043 GO:0016236 GO:0022411 GO:0022607 GO:0033036 GO:0034497 GO:0034613 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044248 GO:0044424 GO:0044444 GO:0044464 GO:0044804 GO:0044805 GO:0050832 GO:0050896 GO:0051179 GO:0051641 GO:0051704 GO:0051707 GO:0061726 GO:0061919 GO:0070727 GO:0070925 GO:0071840 GO:0098542 GO:1903008 GO:1905037

KEGG Pathways

Metabolic & Signaling

ko04136 ko04137 ko04138 ko04140 map04136 map04137 map04138 map04140

Pfam Domains

Protein Families

APG9

Protein Analysis

875

Amino Acids

100.62

Weight (kDa)

6.14

Isoelectric Point (pI)

43.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ATG9	PF04109	61 - 555	3.4e-163	Autophagy protein ATG9

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013522)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31260
fragaria_vesca	FvH4_2g21710
malus_domestica	MD05G1199600.v1.1 MD10G1185900.v1.1
prunus_persica	Prupe.8G225400_v2.0.a1 Prupe.8G225400_v2.0.a1
pyrus_communis	pycom05g18600 pycom10g16080
rosa_chinensis	RchiOBHm_Chr6g0288391
rosa_laevigata	RLG00000012408
rosa_multiflora	Rmu_sc0001038.1_g000011
rosa_roxburghii	Rroxscaffold_7G00180100
rosa_rugosa	Rorug06G0196200
rosa_samantha	Rh6AG307100 Rh6BG313100 Rh6CG320900 Rh6DG306300
rosa_wichuraiana	Rw6G026570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	263, 1041
AatII	GACGTC	2 cut(s)	32, 1807
AccB1I	GGYRCC	2 cut(s)	124, 2200
AccB7I	CCANNNNNTGG	3 cut(s)	782, 1676, 1931
AccBSI	CCGCTC	1 cut(s)	655
AccI	GTMKAC	1 cut(s)	1502
AccIII	TCCGGA	1 cut(s)	2608
AciI	CCGC	3 cut(s)	653, 706, 2250
AclWI	GGATC	2 cut(s)	1382, 2369
AcoI	YGGCCR	2 cut(s)	2021, 2287
AcsI	RAATTY	6 cut(s)	591, 892, 1078, 1103, 1211, 2132
AcuI	CTGAAG	3 cut(s)	135, 2210, 2385
AcyI	GRCGYC	2 cut(s)	29, 1804
AfaI	GTAC	6 cut(s)	1416, 1710, 2223, 2245, 2299, 2590
AjnI	CCWGG	4 cut(s)	133, 775, 1833, 1930
Alw26I	GTCTC	4 cut(s)	575, 1191, 1451, 1701
AlwI	GGATC	2 cut(s)	1382, 2369
AlwNI	CAGNNNCTG	1 cut(s)	782
Ama87I	CYCGRG	1 cut(s)	2321
Aor13HI	TCCGGA	1 cut(s)	2608
AoxI	GGCC	5 cut(s)	1288, 1530, 1922, 2021, 2287
ApeKI	GCWGC	5 cut(s)	649, 1241, 1322, 1358, 1375
ApoI	RAATTY	6 cut(s)	591, 892, 1078, 1103, 1211, 2132
ArsI	GACNNNNNNTTYG	2 cut(s)	194, 226
AseI	ATTAAT	1 cut(s)	827
Asp700I	GAANNNNTTC	2 cut(s)	417, 1470
AspS9I	GGNCC	7 cut(s)	202, 785, 852, 1117, 1288, 1381, 1786
AsuC2I	CCSGG	1 cut(s)	2047
AsuHPI	GGTGA	2 cut(s)	179, 1979
AsuII	TTCGAA	1 cut(s)	378
AvaI	CYCGRG	1 cut(s)	2321
AvaII	GGWCC	6 cut(s)	202, 785, 852, 1117, 1381, 1786
AxyI	CCTNAGG	2 cut(s)	96, 1019
BaeGI	GKGCMC	1 cut(s)	127
BanI	GGYRCC	2 cut(s)	124, 2200
BanII	GRGCYC	2 cut(s)	149, 2152
BarI	GAAGNNNNNNTAC	2 cut(s)	701, 733
BbsI	GAAGAC	3 cut(s)	338, 493, 1445
BbvI	GCAGC	5 cut(s)	661, 1228, 1309, 1345, 1362
BccI	CCATC	6 cut(s)	361, 467, 803, 1053, 1522, 1786
BceAI	ACGGC	2 cut(s)	2049, 2362
BciT130I	CCWGG	4 cut(s)	135, 777, 1835, 1932
BciVI	GTATCC	1 cut(s)	529
BcnI	CCSGG	1 cut(s)	2047
BcoDI	GTCTC	4 cut(s)	575, 1191, 1451, 1701
BfaI	CTAG	7 cut(s)	1143, 1283, 1863, 2117, 2280, 2540, 2592
BfmI	CTRYAG	3 cut(s)	223, 872, 1200
BfuI	GTATCC	1 cut(s)	529
BglII	AGATCT	2 cut(s)	670, 2140
BisI	GCNGC	6 cut(s)	650, 653, 1242, 1323, 1359, 1376
BlsI	GCNGC	6 cut(s)	651, 654, 1243, 1324, 1360, 1377
BmcAI	AGTACT	1 cut(s)	2590
Bme1390I	CCNGG	5 cut(s)	135, 777, 1835, 1932, 2047
Bme18I	GGWCC	6 cut(s)	202, 785, 852, 1117, 1381, 1786
BmeT110I	CYCGRG	1 cut(s)	2321
BmgT120I	GGNCC	7 cut(s)	202, 785, 852, 1117, 1288, 1381, 1786
BmiI	GGNNCC	6 cut(s)	93, 126, 774, 1787, 1788, 2202
BmrFI	CCNGG	5 cut(s)	135, 777, 1835, 1932, 2047
BmrI	ACTGGG	2 cut(s)	2302, 2353
BmsI	GCATC	6 cut(s)	361, 591, 620, 693, 1067, 2239
BmuI	ACTGGG	2 cut(s)	2302, 2353
BpiI	GAAGAC	3 cut(s)	338, 493, 1445
BplI	GAGNNNNNCTC	4 cut(s)	1517, 1549, 1714, 1746
BpmI	CTGGAG	3 cut(s)	1289, 2313, 2583
Bpu10I	CCTNAGC	2 cut(s)	80, 408
Bpu14I	TTCGAA	1 cut(s)	378
BpuEI	CTTGAG	3 cut(s)	866, 1541, 1782
BpuMI	CCSGG	1 cut(s)	2047
BsaBI	GATNNNNATC	2 cut(s)	2100, 2409
BsaHI	GRCGYC	2 cut(s)	29, 1804
BsaI	GGTCTC	1 cut(s)	1701
BsaJI	CCNNGG	3 cut(s)	605, 1930, 2046
BsaWI	WCCGGW	1 cut(s)	2608
BsaXI	ACNNNNNCTCC	8 cut(s)	1736, 1766, 1829, 1859, 1861, 1891, 2581, 2611
Bse1I	ACTGG	6 cut(s)	1510, 1942, 2290, 2308, 2359, 2463
Bse21I	CCTNAGG	2 cut(s)	96, 1019
Bse3DI	GCAATG	1 cut(s)	1407
Bse8I	GATNNNNATC	2 cut(s)	2100, 2409
BseAI	TCCGGA	1 cut(s)	2608
BseBI	CCWGG	4 cut(s)	135, 777, 1835, 1932
BseDI	CCNNGG	3 cut(s)	605, 1930, 2046
BseGI	GGATG	8 cut(s)	91, 372, 376, 1045, 1098, 1591, 2254, 2539
BseJI	GATNNNNATC	2 cut(s)	2100, 2409
BseMI	GCAATG	1 cut(s)	1407
BseMII	CTCAG	9 cut(s)	87, 324, 539, 819, 1010, 1745, 1814, 2070, 2439
BseNI	ACTGG	6 cut(s)	1510, 1942, 2290, 2308, 2359, 2463
BseRI	GAGGAG	3 cut(s)	1538, 1738, 1869
BseSI	GKGCMC	1 cut(s)	127
BseXI	GCAGC	5 cut(s)	661, 1228, 1309, 1345, 1362
BshFI	GGCC	5 cut(s)	1290, 1532, 1924, 2023, 2289
BshNI	GGYRCC	2 cut(s)	124, 2200
BsiHKCI	CYCGRG	1 cut(s)	2321
BsiSI	CCGG	2 cut(s)	2046, 2609
BslFI	GGGAC	6 cut(s)	923, 1556, 1799, 1866, 2063, 2500
BsmAI	GTCTC	4 cut(s)	575, 1191, 1451, 1701
BsmBI	CGTCTC	1 cut(s)	1191
BsmFI	GGGAC	6 cut(s)	923, 1556, 1799, 1866, 2063, 2500
BsmI	GAATGC	3 cut(s)	374, 735, 867
BsnI	GGCC	5 cut(s)	1290, 1532, 1924, 2023, 2289
Bso31I	GGTCTC	1 cut(s)	1701
BsoBI	CYCGRG	1 cut(s)	2321
Bsp119I	TTCGAA	1 cut(s)	378
Bsp1286I	GDGCHC	3 cut(s)	127, 149, 2152
Bsp13I	TCCGGA	1 cut(s)	2608
Bsp143I	GATC	9 cut(s)	670, 886, 1387, 1975, 2140, 2164, 2374, 2503, 2563
Bsp19I	CCATGG	1 cut(s)	605
BspACI	CCGC	3 cut(s)	653, 706, 2250
BspANI	GGCC	5 cut(s)	1290, 1532, 1924, 2023, 2289
BspCNI	CTCAG	9 cut(s)	88, 323, 538, 818, 1011, 1744, 1815, 2071, 2438
BspEI	TCCGGA	1 cut(s)	2608
BspHI	TCATGA	2 cut(s)	682, 2233
BspLI	GGNNCC	6 cut(s)	93, 126, 774, 1787, 1788, 2202
BspMAI	CTGCAG	1 cut(s)	876
BspPI	GGATC	2 cut(s)	1382, 2369
BspT104I	TTCGAA	1 cut(s)	378
BspT107I	GGYRCC	2 cut(s)	124, 2200
BspTNI	GGTCTC	1 cut(s)	1701
BsrBI	CCGCTC	1 cut(s)	655
BsrDI	GCAATG	1 cut(s)	1407
BsrI	ACTGG	6 cut(s)	1510, 1942, 2290, 2308, 2359, 2463
BssECI	CCNNGG	3 cut(s)	605, 1930, 2046
BssMI	GATC	9 cut(s)	670, 886, 1387, 1975, 2140, 2164, 2374, 2503, 2563
BssNAI	GTATAC	1 cut(s)	1503
BssNI	GRCGYC	2 cut(s)	29, 1804
BssT1I	CCWWGG	1 cut(s)	605
Bst1107I	GTATAC	1 cut(s)	1503
Bst2UI	CCWGG	4 cut(s)	135, 777, 1835, 1932
Bst4CI	ACNGT	8 cut(s)	768, 793, 1035, 1599, 1618, 1959, 2175, 2487
Bst6I	CTCTTC	2 cut(s)	1019, 1571
BstACI	GRCGYC	2 cut(s)	29, 1804
BstAPI	GCANNNNNTGC	1 cut(s)	1846
BstBI	TTCGAA	1 cut(s)	378
BstC8I	GCNNGC	2 cut(s)	1026, 1158
BstDSI	CCRYGG	1 cut(s)	605
BstENI	CCTNNNNNAGG	2 cut(s)	407, 1884
BstF5I	GGATG	8 cut(s)	91, 372, 376, 1045, 1098, 1591, 2254, 2539
BstKTI	GATC	9 cut(s)	673, 889, 1390, 1978, 2143, 2167, 2377, 2506, 2566
BstMAI	GTCTC	4 cut(s)	575, 1191, 1451, 1701
BstMBI	GATC	9 cut(s)	670, 886, 1387, 1975, 2140, 2164, 2374, 2503, 2563
BstMWI	GCNNNNNNNGC	4 cut(s)	144, 413, 703, 1846
BstNI	CCWGG	4 cut(s)	135, 777, 1835, 1932
BstNSI	RCATGY	3 cut(s)	883, 1028, 1160
BstSCI	CCNGG	5 cut(s)	133, 775, 1833, 1930, 2045
BstSFI	CTRYAG	3 cut(s)	223, 872, 1200
BstSLI	GKGCMC	1 cut(s)	127
BstV1I	GCAGC	5 cut(s)	661, 1228, 1309, 1345, 1362
BstV2I	GAAGAC	3 cut(s)	338, 493, 1445
BstX2I	RGATCY	2 cut(s)	670, 2140
BstXI	CCANNNNNNTGG	2 cut(s)	496, 1298
BstYI	RGATCY	2 cut(s)	670, 2140
BstZ17I	GTATAC	1 cut(s)	1503
Bsu36I	CCTNAGG	2 cut(s)	96, 1019
BsuI	GTATCC	1 cut(s)	529
BsuRI	GGCC	5 cut(s)	1290, 1532, 1924, 2023, 2289
BtgI	CCRYGG	1 cut(s)	605
BtgZI	GCGATG	1 cut(s)	1243
BtsCI	GGATG	8 cut(s)	91, 372, 376, 1045, 1098, 1591, 2254, 2539
BtsI	GCAGTG	2 cut(s)	145, 1153
BtsIMutI	CAGTG	4 cut(s)	145, 773, 1153, 1955
Cac8I	GCNNGC	2 cut(s)	1026, 1158
CaiI	CAGNNNCTG	1 cut(s)	782
CciI	TCATGA	2 cut(s)	682, 2233
Cfr13I	GGNCC	7 cut(s)	202, 785, 852, 1117, 1288, 1381, 1786
CseI	GACGC	4 cut(s)	1311, 1979, 2246, 2381
Csp6I	GTAC	6 cut(s)	1415, 1709, 2222, 2244, 2298, 2589
CspCI	CAANNNNNGTGG	2 cut(s)	2511, 2546
CviQI	GTAC	6 cut(s)	1415, 1709, 2222, 2244, 2298, 2589
DpnI	GATC	9 cut(s)	672, 888, 1389, 1977, 2142, 2166, 2376, 2505, 2565
DpnII	GATC	9 cut(s)	670, 886, 1387, 1975, 2140, 2164, 2374, 2503, 2563
DraI	TTTAAA	2 cut(s)	42, 1129
EaeI	YGGCCR	2 cut(s)	2021, 2287
Eam1104I	CTCTTC	2 cut(s)	1019, 1571
EarI	CTCTTC	2 cut(s)	1019, 1571
Eco130I	CCWWGG	1 cut(s)	605
Eco24I	GRGCYC	2 cut(s)	149, 2152
Eco31I	GGTCTC	1 cut(s)	1701
Eco47I	GGWCC	6 cut(s)	202, 785, 852, 1117, 1381, 1786
Eco57I	CTGAAG	3 cut(s)	135, 2210, 2385
Eco81I	CCTNAGG	2 cut(s)	96, 1019
Eco88I	CYCGRG	1 cut(s)	2321
EcoNI	CCTNNNNNAGG	2 cut(s)	407, 1884
EcoO109I	RGGNCCY	1 cut(s)	1786
EcoRII	CCWGG	4 cut(s)	133, 775, 1833, 1930
EcoT14I	CCWWGG	1 cut(s)	605
EcoT22I	ATGCAT	1 cut(s)	376
EcoT38I	GRGCYC	2 cut(s)	149, 2152
ErhI	CCWWGG	1 cut(s)	605
Esp3I	CGTCTC	1 cut(s)	1191
FalI	AAGNNNNNCTT	2 cut(s)	523, 555
FaqI	GGGAC	6 cut(s)	923, 1556, 1799, 1866, 2063, 2500
FblI	GTMKAC	1 cut(s)	1502
Fnu4HI	GCNGC	6 cut(s)	650, 653, 1242, 1323, 1359, 1376
FokI	GGATG	8 cut(s)	98, 379, 383, 1032, 1105, 1598, 2241, 2546
FriOI	GRGCYC	2 cut(s)	149, 2152
Fsp4HI	GCNGC	6 cut(s)	650, 653, 1242, 1323, 1359, 1376
FspBI	CTAG	7 cut(s)	1143, 1283, 1863, 2117, 2280, 2540, 2592
GluI	GCNGC	6 cut(s)	650, 653, 1242, 1323, 1359, 1376
GsuI	CTGGAG	3 cut(s)	1289, 2313, 2583
HaeIII	GGCC	5 cut(s)	1290, 1532, 1924, 2023, 2289
HapII	CCGG	2 cut(s)	2046, 2609
HgaI	GACGC	4 cut(s)	1311, 1979, 2246, 2381
Hin1I	GRCGYC	2 cut(s)	29, 1804
HindIII	AAGCTT	3 cut(s)	286, 2365, 2434
HinfI	GANTC	9 cut(s)	56, 130, 315, 380, 1137, 1274, 1984, 2101, 2266
HpaII	CCGG	2 cut(s)	2046, 2609
HphI	GGTGA	2 cut(s)	179, 1979
Hpy166II	GTNNAC	6 cut(s)	852, 1117, 1503, 2171, 2222, 2300
Hpy188I	TCNGA	7 cut(s)	112, 597, 808, 1165, 2404, 2428, 2508
Hpy8I	GTNNAC	6 cut(s)	852, 1117, 1503, 2171, 2222, 2300
Hpy99I	CGWCG	1 cut(s)	2200
HpyCH4III	ACNGT	8 cut(s)	768, 793, 1035, 1599, 1618, 1959, 2175, 2487
HpyCH4IV	ACGT	3 cut(s)	29, 1804, 2195
HpyCH4V	TGCA	9 cut(s)	356, 374, 867, 874, 1028, 1156, 1607, 1849, 2263
HpyF10VI	GCNNNNNNNGC	4 cut(s)	144, 413, 703, 1846
HpySE526I	ACGT	3 cut(s)	29, 1804, 2195
Hsp92I	GRCGYC	2 cut(s)	29, 1804
KflI	GGGWCCC	1 cut(s)	1786
Kpn2I	TCCGGA	1 cut(s)	2608
Kzo9I	GATC	9 cut(s)	670, 886, 1387, 1975, 2140, 2164, 2374, 2503, 2563
LmnI	GCTCC	4 cut(s)	97, 1552, 1721, 1837
Lsp1109I	GCAGC	5 cut(s)	661, 1228, 1309, 1345, 1362
LweI	GCATC	6 cut(s)	361, 591, 620, 693, 1067, 2239
MaeI	CTAG	7 cut(s)	1143, 1283, 1863, 2117, 2280, 2540, 2592
MaeII	ACGT	3 cut(s)	29, 1804, 2195
MaeIII	GTNAC	9 cut(s)	25, 398, 551, 577, 901, 1515, 1769, 1953, 2039
MalI	GATC	9 cut(s)	672, 888, 1389, 1977, 2142, 2166, 2376, 2505, 2565
MbiI	CCGCTC	1 cut(s)	655
MboI	GATC	9 cut(s)	670, 886, 1387, 1975, 2140, 2164, 2374, 2503, 2563
MfeI	CAATTG	1 cut(s)	189
MflI	RGATCY	2 cut(s)	670, 2140
MhlI	GDGCHC	3 cut(s)	127, 149, 2152
MlyI	GAGTC	2 cut(s)	139, 2275
MmeI	TCCRAC	4 cut(s)	448, 812, 2129, 2469
Mph1103I	ATGCAT	1 cut(s)	376
MroI	TCCGGA	1 cut(s)	2608
MroXI	GAANNNNTTC	2 cut(s)	417, 1470
MslI	CAYNNNNRTG	3 cut(s)	998, 2160, 2574
MspA1I	CMGCKG	1 cut(s)	1822
MspI	CCGG	2 cut(s)	2046, 2609
MspR9I	CCNGG	5 cut(s)	135, 777, 1835, 1932, 2047
MssI	GTTTAAAC	1 cut(s)	1129
MunI	CAATTG	1 cut(s)	189
Mva1269I	GAATGC	3 cut(s)	374, 735, 867
MvaI	CCWGG	4 cut(s)	135, 777, 1835, 1932
MwoI	GCNNNNNNNGC	4 cut(s)	144, 413, 703, 1846
NciI	CCSGG	1 cut(s)	2047
NcoI	CCATGG	1 cut(s)	605
NdeII	GATC	9 cut(s)	670, 886, 1387, 1975, 2140, 2164, 2374, 2503, 2563
NlaIV	GGNNCC	6 cut(s)	93, 126, 774, 1787, 1788, 2202
NmeAIII	GCCGAG	1 cut(s)	1999
NmuCI	GTSAC	5 cut(s)	25, 398, 551, 577, 1953
NsiI	ATGCAT	1 cut(s)	376
NspI	RCATGY	3 cut(s)	883, 1028, 1160
NspV	TTCGAA	1 cut(s)	378
PaeI	GCATGC	2 cut(s)	1028, 1160
PaeR7I	CTCGAG	1 cut(s)	2321
PagI	TCATGA	2 cut(s)	682, 2233
PctI	GAATGC	3 cut(s)	374, 735, 867
PdmI	GAANNNNTTC	2 cut(s)	417, 1470
PfeI	GAWTC	7 cut(s)	56, 315, 380, 1137, 1274, 1984, 2101
PflMI	CCANNNNNTGG	3 cut(s)	782, 1676, 1931
PfoI	TCCNGGA	1 cut(s)	1833
PkrI	GCNGC	6 cut(s)	651, 654, 1243, 1324, 1360, 1377
PleI	GAGTC	2 cut(s)	138, 2274
PmeI	GTTTAAAC	1 cut(s)	1129
PpsI	GAGTC	2 cut(s)	138, 2274
PpuMI	RGGWCCY	1 cut(s)	1786
PshBI	ATTAAT	1 cut(s)	827
PsiI	TTATAA	2 cut(s)	263, 1041
Psp5II	RGGWCCY	1 cut(s)	1786
Psp6I	CCWGG	4 cut(s)	133, 775, 1833, 1930
PspGI	CCWGG	4 cut(s)	133, 775, 1833, 1930
PspN4I	GGNNCC	6 cut(s)	93, 126, 774, 1787, 1788, 2202
PspPI	GGNCC	7 cut(s)	202, 785, 852, 1117, 1288, 1381, 1786
PspPPI	RGGWCCY	1 cut(s)	1786
PsrI	GAACNNNNNNTAC	2 cut(s)	813, 845
PstI	CTGCAG	1 cut(s)	876
PstNI	CAGNNNCTG	1 cut(s)	782
PsuI	RGATCY	2 cut(s)	670, 2140
PvuII	CAGCTG	1 cut(s)	1822
RsaI	GTAC	6 cut(s)	1416, 1710, 2223, 2245, 2299, 2590
RsaNI	GTAC	6 cut(s)	1415, 1709, 2222, 2244, 2298, 2589
RseI	CAYNNNNRTG	3 cut(s)	998, 2160, 2574
SatI	GCNGC	6 cut(s)	650, 653, 1242, 1323, 1359, 1376
Sau3AI	GATC	9 cut(s)	670, 886, 1387, 1975, 2140, 2164, 2374, 2503, 2563
Sau96I	GGNCC	7 cut(s)	202, 785, 852, 1117, 1288, 1381, 1786
ScaI	AGTACT	1 cut(s)	2590
SchI	GAGTC	2 cut(s)	139, 2275
ScrFI	CCNGG	5 cut(s)	135, 777, 1835, 1932, 2047
SduI	GDGCHC	3 cut(s)	127, 149, 2152
SfaNI	GCATC	6 cut(s)	361, 591, 620, 693, 1067, 2239
SfcI	CTRYAG	3 cut(s)	223, 872, 1200
Sfr274I	CTCGAG	1 cut(s)	2321
SfuI	TTCGAA	1 cut(s)	378
SinI	GGWCC	6 cut(s)	202, 785, 852, 1117, 1381, 1786
SlaI	CTCGAG	1 cut(s)	2321
SmiMI	CAYNNNNRTG	3 cut(s)	998, 2160, 2574
SmlI	CTYRAG	4 cut(s)	845, 1520, 1797, 2321
SmoI	CTYRAG	4 cut(s)	845, 1520, 1797, 2321
SphI	GCATGC	2 cut(s)	1028, 1160
SsiI	CCGC	3 cut(s)	653, 706, 2250
SspMI	CTAG	7 cut(s)	1143, 1283, 1863, 2117, 2280, 2540, 2592
StyD4I	CCNGG	5 cut(s)	133, 775, 1833, 1930, 2045
StyI	CCWWGG	1 cut(s)	605
TaaI	ACNGT	8 cut(s)	768, 793, 1035, 1599, 1618, 1959, 2175, 2487
TaiI	ACGT	3 cut(s)	32, 1807, 2198
TaqI	TCGA	8 cut(s)	378, 889, 1066, 1474, 1662, 2322, 2373, 2574
TatI	WGTACW	2 cut(s)	2221, 2588
TauI	GCSGC	1 cut(s)	655
TfiI	GAWTC	7 cut(s)	56, 315, 380, 1137, 1274, 1984, 2101
TscAI	CASTG	4 cut(s)	145, 773, 1153, 1962
TseFI	GTSAC	5 cut(s)	25, 398, 551, 577, 1953
TseI	GCWGC	5 cut(s)	649, 1241, 1322, 1358, 1375
Tsp45I	GTSAC	5 cut(s)	25, 398, 551, 577, 1953
TspDTI	ATGAA	7 cut(s)	48, 410, 603, 988, 1204, 2377, 2558
TspGWI	ACGGA	3 cut(s)	539, 1173, 2430
TspRI	CASTG	4 cut(s)	145, 773, 1153, 1962
Van91I	CCANNNNNTGG	3 cut(s)	782, 1676, 1931
VpaK11BI	GGWCC	6 cut(s)	202, 785, 852, 1117, 1381, 1786
VspI	ATTAAT	1 cut(s)	827
XagI	CCTNNNNNAGG	2 cut(s)	407, 1884
XapI	RAATTY	6 cut(s)	591, 892, 1078, 1103, 1211, 2132
XbaI	TCTAGA	1 cut(s)	2116
XceI	RCATGY	3 cut(s)	883, 1028, 1160
XhoI	CTCGAG	1 cut(s)	2321
XmiI	GTMKAC	1 cut(s)	1502
XmnI	GAANNNNTTC	2 cut(s)	417, 1470
XspI	CTAG	7 cut(s)	1143, 1283, 1863, 2117, 2280, 2540, 2592
ZraI	GACGTC	2 cut(s)	30, 1805
ZrmI	AGTACT	1 cut(s)	2590
Zsp2I	ATGCAT	1 cut(s)	376

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.