Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0015841

Physical Location & Seq

Genomic Coordinates Reverse (-)

19432477 .. 19433327

Gene Structure 851 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g23750.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 213 bp

ATGGCTAAAAAAGGTTCAGCTGCGAAGCAAGCGGCGGTGGTGTTCGGAGCCCTTGCGGTTGGGTGGTTGGCCATAGAGCTCGCCTTCAAGCCCTGGCTCGACAAGGCCCGATCCGCCATGAACAAGTCCGACCCGGCCCGCGATCCTGACGACGTCGTCGAGGCGGAGGAGGACACCGCCGCCAAGACCGACGACACCCCCAAGGATGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009707 GO:0009941 GO:0016020 GO:0016021 GO:0019867 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031350 GO:0031351 GO:0031354 GO:0031355 GO:0031358 GO:0031359 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0042170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

71

Amino Acids

7.4

Weight (kDa)

4.73

Isoelectric Point (pI)

32.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0015841)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52420
fragaria_vesca	FvH4_2g23750
malus_domestica	MD03G1267100.v1.1 MD11G1287600.v1.1
prunus_persica	Prupe.8G242800_v2.0.a1
pyrus_communis	pycom11g25500
rosa_chinensis	RchiOBHm_Chr6g0291241
rosa_multiflora	Rmu_sc0013203.1_g000028
rosa_roxburghii	Rroxscaffold_7G00176210
rosa_rugosa	Rorug06G0218600
rosa_samantha	Rh6AG329700 Rh6BG336900 Rh6CG343200 Rh6DG330300
rosa_wichuraiana	Rw6G028650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	155
AatII	GACGTC	1 cut(s)	156
AccII	CGCG	1 cut(s)	141
AciI	CCGC	8 cut(s)	32, 35, 56, 114, 139, 164, 177, 180
AclWI	GGATC	2 cut(s)	105, 137
AcoI	YGGCCR	1 cut(s)	69
AcyI	GRCGYC	1 cut(s)	153
AgsI	TTSAA	1 cut(s)	88
AjnI	CCWGG	1 cut(s)	92
AluBI	AGCT	2 cut(s)	20, 79
AluI	AGCT	2 cut(s)	20, 79
Alw21I	GWGCWC	1 cut(s)	81
AlwI	GGATC	2 cut(s)	105, 137
AoxI	GGCC	3 cut(s)	69, 105, 135
ApeKI	GCWGC	1 cut(s)	20
AspS9I	GGNCC	2 cut(s)	106, 136
AsuC2I	CCSGG	1 cut(s)	134
BalI	TGGCCA	1 cut(s)	71
BanII	GRGCYC	2 cut(s)	52, 81
Bbv12I	GWGCWC	1 cut(s)	81
BbvI	GCAGC	1 cut(s)	7
BciT130I	CCWGG	1 cut(s)	94
BcnI	CCSGG	1 cut(s)	134
BisI	GCNGC	3 cut(s)	21, 33, 180
BlsI	GCNGC	3 cut(s)	22, 34, 181
Bme1390I	CCNGG	2 cut(s)	94, 134
BmgT120I	GGNCC	2 cut(s)	106, 136
BmiI	GGNNCC	1 cut(s)	49
BmrFI	CCNGG	2 cut(s)	94, 134
BmsI	GCATC	1 cut(s)	196
BpuMI	CCSGG	1 cut(s)	134
BsaHI	GRCGYC	1 cut(s)	153
BsaJI	CCNNGG	2 cut(s)	92, 201
BseBI	CCWGG	1 cut(s)	94
BseDI	CCNNGG	2 cut(s)	92, 201
BseGI	GGATG	1 cut(s)	211
BseRI	GAGGAG	1 cut(s)	182
BseXI	GCAGC	1 cut(s)	7
Bsh1236I	CGCG	1 cut(s)	141
BshFI	GGCC	3 cut(s)	71, 107, 137
BsiHKAI	GWGCWC	1 cut(s)	81
BsiSI	CCGG	1 cut(s)	134
BsnI	GGCC	3 cut(s)	71, 107, 137
Bsp1286I	GDGCHC	2 cut(s)	52, 81
Bsp143I	GATC	2 cut(s)	110, 142
BspACI	CCGC	8 cut(s)	32, 35, 56, 114, 139, 164, 177, 180
BspANI	GGCC	3 cut(s)	71, 107, 137
BspFNI	CGCG	1 cut(s)	141
BspLI	GGNNCC	1 cut(s)	49
BspPI	GGATC	2 cut(s)	105, 137
BssECI	CCNNGG	2 cut(s)	92, 201
BssMI	GATC	2 cut(s)	110, 142
BssNI	GRCGYC	1 cut(s)	153
BssT1I	CCWWGG	1 cut(s)	201
Bst2UI	CCWGG	1 cut(s)	94
BstACI	GRCGYC	1 cut(s)	153
BstC8I	GCNNGC	3 cut(s)	30, 81, 139
BstF5I	GGATG	1 cut(s)	211
BstFNI	CGCG	1 cut(s)	141
BstKTI	GATC	2 cut(s)	113, 145
BstMBI	GATC	2 cut(s)	110, 142
BstMWI	GCNNNNNNNGC	2 cut(s)	29, 113
BstNI	CCWGG	1 cut(s)	94
BstSCI	CCNGG	2 cut(s)	92, 132
BstUI	CGCG	1 cut(s)	141
BstV1I	GCAGC	1 cut(s)	7
BsuRI	GGCC	3 cut(s)	71, 107, 137
BtsCI	GGATG	1 cut(s)	211
Cac8I	GCNNGC	3 cut(s)	30, 81, 139
Cfr13I	GGNCC	2 cut(s)	106, 136
CviAII	CATG	1 cut(s)	118
CviJI	RGCY	9 cut(s)	5, 20, 50, 71, 79, 91, 97, 107, 137
CviKI_1	RGCY	9 cut(s)	5, 20, 50, 71, 79, 91, 97, 107, 137
DpnI	GATC	2 cut(s)	112, 144
DpnII	GATC	2 cut(s)	110, 142
DrdI	GACNNNNNNGTC	1 cut(s)	155
DseDI	GACNNNNNNGTC	1 cut(s)	155
EaeI	YGGCCR	1 cut(s)	69
EciI	GGCGGA	2 cut(s)	103, 179
Ecl136II	GAGCTC	1 cut(s)	79
Eco130I	CCWWGG	1 cut(s)	201
Eco24I	GRGCYC	2 cut(s)	52, 81
Eco53kI	GAGCTC	1 cut(s)	79
EcoICRI	GAGCTC	1 cut(s)	79
EcoRII	CCWGG	1 cut(s)	92
EcoT14I	CCWWGG	1 cut(s)	201
EcoT38I	GRGCYC	2 cut(s)	52, 81
ErhI	CCWWGG	1 cut(s)	201
FaeI	CATG	1 cut(s)	121
FaiI	YATR	2 cut(s)	74, 119
FatI	CATG	1 cut(s)	117
FauI	CCCGC	1 cut(s)	146
Fnu4HI	GCNGC	3 cut(s)	21, 33, 180
FriOI	GRGCYC	2 cut(s)	52, 81
Fsp4HI	GCNGC	3 cut(s)	21, 33, 180
GluI	GCNGC	3 cut(s)	21, 33, 180
HaeIII	GGCC	3 cut(s)	71, 107, 137
HapII	CCGG	1 cut(s)	134
Hin1I	GRCGYC	1 cut(s)	153
Hin1II	CATG	1 cut(s)	121
HpaII	CCGG	1 cut(s)	134
Hpy188I	TCNGA	2 cut(s)	47, 130
Hpy188III	TCNNGA	1 cut(s)	146
Hpy99I	CGWCG	4 cut(s)	155, 158, 161, 194
HpyAV	CCTTC	1 cut(s)	94
HpyCH4IV	ACGT	1 cut(s)	153
HpyF10VI	GCNNNNNNNGC	2 cut(s)	29, 113
HpySE526I	ACGT	1 cut(s)	153
Hsp92I	GRCGYC	1 cut(s)	153
Hsp92II	CATG	1 cut(s)	121
Kzo9I	GATC	2 cut(s)	110, 142
LmnI	GCTCC	1 cut(s)	47
LpnPI	CCDG	4 cut(s)	79, 106, 147, 159
Lsp1109I	GCAGC	1 cut(s)	7
LweI	GCATC	1 cut(s)	196
MaeII	ACGT	1 cut(s)	153
MalI	GATC	2 cut(s)	112, 144
MboI	GATC	2 cut(s)	110, 142
MhlI	GDGCHC	2 cut(s)	52, 81
MlsI	TGGCCA	1 cut(s)	71
MluNI	TGGCCA	1 cut(s)	71
MmeI	TCCRAC	1 cut(s)	153
MnlI	CCTC	3 cut(s)	154, 160, 163
Mox20I	TGGCCA	1 cut(s)	71
MscI	TGGCCA	1 cut(s)	71
Msp20I	TGGCCA	1 cut(s)	71
MspA1I	CMGCKG	1 cut(s)	20
MspI	CCGG	1 cut(s)	134
MspR9I	CCNGG	2 cut(s)	94, 134
MvaI	CCWGG	1 cut(s)	94
MvnI	CGCG	1 cut(s)	141
MwoI	GCNNNNNNNGC	2 cut(s)	29, 113
NciI	CCSGG	1 cut(s)	134
NdeII	GATC	2 cut(s)	110, 142
NlaIII	CATG	1 cut(s)	121
NlaIV	GGNNCC	1 cut(s)	49
PcsI	WCGNNNNNNNCGW	1 cut(s)	156
PflFI	GACNNNGTC	2 cut(s)	152, 155
PkrI	GCNGC	3 cut(s)	22, 34, 181
Psp124BI	GAGCTC	1 cut(s)	81
Psp6I	CCWGG	1 cut(s)	92
PspGI	CCWGG	1 cut(s)	92
PspN4I	GGNNCC	1 cut(s)	49
PspPI	GGNCC	2 cut(s)	106, 136
PsyI	GACNNNGTC	2 cut(s)	152, 155
PvuII	CAGCTG	1 cut(s)	20
SacI	GAGCTC	1 cut(s)	81
SatI	GCNGC	3 cut(s)	21, 33, 180
Sau3AI	GATC	2 cut(s)	110, 142
Sau96I	GGNCC	2 cut(s)	106, 136
ScrFI	CCNGG	2 cut(s)	94, 134
SduI	GDGCHC	2 cut(s)	52, 81
SetI	ASST	4 cut(s)	16, 22, 81, 156
SfaNI	GCATC	1 cut(s)	196
SsiI	CCGC	8 cut(s)	32, 35, 56, 114, 139, 164, 177, 180
SstI	GAGCTC	1 cut(s)	81
StyD4I	CCNGG	2 cut(s)	92, 132
StyI	CCWWGG	1 cut(s)	201
TaiI	ACGT	1 cut(s)	156
TaqI	TCGA	2 cut(s)	99, 159
TaqII	GACCGA	1 cut(s)	203
TauI	GCSGC	2 cut(s)	35, 182
TseI	GCWGC	1 cut(s)	20
TspDTI	ATGAA	1 cut(s)	134
Tth111I	GACNNNGTC	2 cut(s)	152, 155
ZraI	GACGTC	1 cut(s)	154

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.