Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0015841

Physical Location & Seq

Genomic Coordinates Reverse (-)

21210672 .. 21210863

Gene Structure 192 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G242800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 192 bp

ATGGGGAAGCCGACGGCTACGCAGCAAGCGATGGTGGTGTTCGGAGCCCTAGCGGTTGGTTGGCTGGCCATAGAGATGGCTTTCAAGCCCTGGCTTGACAAGGTTCGTGCCGCCATGGACAAGTCTGACCCTGCTCGCGACCCCGACGAAGACGACGTCGTCAAGGCTGACGAGACCGCTGCTGATGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009707 GO:0009941 GO:0016020 GO:0016021 GO:0019867 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031350 GO:0031351 GO:0031354 GO:0031355 GO:0031358 GO:0031359 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0042170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

64

Amino Acids

6.82

Weight (kDa)

4.34

Isoelectric Point (pI)

14.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0015841)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52420
fragaria_vesca	FvH4_2g23750
malus_domestica	MD03G1267100.v1.1 MD11G1287600.v1.1
prunus_persica	Prupe.8G242800_v2.0.a1
pyrus_communis	pycom11g25500
rosa_chinensis	RchiOBHm_Chr6g0291241
rosa_multiflora	Rmu_sc0013203.1_g000028
rosa_roxburghii	Rroxscaffold_7G00176210
rosa_rugosa	Rorug06G0218600
rosa_samantha	Rh6AG329700 Rh6BG336900 Rh6CG343200 Rh6DG330300
rosa_wichuraiana	Rw6G028650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	158
AatII	GACGTC	1 cut(s)	159
AccII	CGCG	1 cut(s)	138
AciI	CCGC	3 cut(s)	53, 111, 177
AcoI	YGGCCR	1 cut(s)	66
AcyI	GRCGYC	1 cut(s)	156
AgsI	TTSAA	1 cut(s)	85
AjnI	CCWGG	1 cut(s)	89
Alw26I	GTCTC	1 cut(s)	167
AoxI	GGCC	1 cut(s)	66
ApeKI	GCWGC	2 cut(s)	22, 179
ArsI	GACNNNNNNTTYG	2 cut(s)	141, 173
BalI	TGGCCA	1 cut(s)	68
BanII	GRGCYC	1 cut(s)	49
BbsI	GAAGAC	1 cut(s)	156
BbvI	GCAGC	2 cut(s)	34, 166
BccI	CCATC	2 cut(s)	25, 70
BceAI	ACGGC	1 cut(s)	30
BcgI	CGANNNNNNTGC	1 cut(s)	161
BciT130I	CCWGG	1 cut(s)	91
BcoDI	GTCTC	1 cut(s)	167
BfaI	CTAG	1 cut(s)	50
BisI	GCNGC	3 cut(s)	23, 111, 180
BlsI	GCNGC	3 cut(s)	24, 112, 181
Bme1390I	CCNGG	1 cut(s)	91
BmiI	GGNNCC	1 cut(s)	46
BmrFI	CCNGG	1 cut(s)	91
BpiI	GAAGAC	1 cut(s)	156
BsaHI	GRCGYC	1 cut(s)	156
BsaI	GGTCTC	1 cut(s)	167
BsaJI	CCNNGG	2 cut(s)	89, 114
BseBI	CCWGG	1 cut(s)	91
BseDI	CCNNGG	2 cut(s)	89, 114
BseXI	GCAGC	2 cut(s)	34, 166
Bsh1236I	CGCG	1 cut(s)	138
BshFI	GGCC	1 cut(s)	68
BsmAI	GTCTC	1 cut(s)	167
BsnI	GGCC	1 cut(s)	68
Bso31I	GGTCTC	1 cut(s)	167
Bsp1286I	GDGCHC	1 cut(s)	49
Bsp19I	CCATGG	1 cut(s)	114
Bsp68I	TCGCGA	1 cut(s)	138
BspACI	CCGC	3 cut(s)	53, 111, 177
BspANI	GGCC	1 cut(s)	68
BspFNI	CGCG	1 cut(s)	138
BspLI	GGNNCC	1 cut(s)	46
BspTNI	GGTCTC	1 cut(s)	167
BssECI	CCNNGG	2 cut(s)	89, 114
BssNI	GRCGYC	1 cut(s)	156
BssT1I	CCWWGG	1 cut(s)	114
Bst2UI	CCWGG	1 cut(s)	91
BstACI	GRCGYC	1 cut(s)	156
BstC8I	GCNNGC	3 cut(s)	27, 66, 136
BstDSI	CCRYGG	1 cut(s)	114
BstFNI	CGCG	1 cut(s)	138
BstMAI	GTCTC	1 cut(s)	167
BstNI	CCWGG	1 cut(s)	91
BstSCI	CCNGG	1 cut(s)	89
BstUI	CGCG	1 cut(s)	138
BstV1I	GCAGC	2 cut(s)	34, 166
BstV2I	GAAGAC	1 cut(s)	156
BstXI	CCANNNNNNTGG	1 cut(s)	76
BsuRI	GGCC	1 cut(s)	68
BtgI	CCRYGG	1 cut(s)	114
BtgZI	GCGATG	1 cut(s)	44
BtuMI	TCGCGA	1 cut(s)	138
Cac8I	GCNNGC	3 cut(s)	27, 66, 136
CviAII	CATG	1 cut(s)	115
CviJI	RGCY	9 cut(s)	10, 17, 47, 64, 68, 80, 88, 94, 167
CviKI_1	RGCY	9 cut(s)	10, 17, 47, 64, 68, 80, 88, 94, 167
DrdI	GACNNNNNNGTC	1 cut(s)	158
DseDI	GACNNNNNNGTC	1 cut(s)	158
EaeI	YGGCCR	1 cut(s)	66
Eco130I	CCWWGG	1 cut(s)	114
Eco24I	GRGCYC	1 cut(s)	49
Eco31I	GGTCTC	1 cut(s)	167
EcoRII	CCWGG	1 cut(s)	89
EcoT14I	CCWWGG	1 cut(s)	114
EcoT38I	GRGCYC	1 cut(s)	49
ErhI	CCWWGG	1 cut(s)	114
FaeI	CATG	1 cut(s)	118
FaiI	YATR	2 cut(s)	71, 116
FatI	CATG	1 cut(s)	114
Fnu4HI	GCNGC	3 cut(s)	23, 111, 180
FriOI	GRGCYC	1 cut(s)	49
Fsp4HI	GCNGC	3 cut(s)	23, 111, 180
FspBI	CTAG	1 cut(s)	50
GluI	GCNGC	3 cut(s)	23, 111, 180
HaeIII	GGCC	1 cut(s)	68
Hin1I	GRCGYC	1 cut(s)	156
Hin1II	CATG	1 cut(s)	118
Hpy188I	TCNGA	2 cut(s)	44, 127
Hpy188III	TCNNGA	1 cut(s)	137
Hpy99I	CGWCG	4 cut(s)	16, 149, 158, 161
HpyCH4IV	ACGT	1 cut(s)	156
HpySE526I	ACGT	1 cut(s)	156
Hsp92I	GRCGYC	1 cut(s)	156
Hsp92II	CATG	1 cut(s)	118
LmnI	GCTCC	1 cut(s)	44
LpnPI	CCDG	4 cut(s)	50, 76, 103, 144
Lsp1109I	GCAGC	2 cut(s)	34, 166
MaeI	CTAG	1 cut(s)	50
MaeII	ACGT	1 cut(s)	156
MboII	GAAGA	1 cut(s)	161
MhlI	GDGCHC	1 cut(s)	49
MlsI	TGGCCA	1 cut(s)	68
MluNI	TGGCCA	1 cut(s)	68
Mox20I	TGGCCA	1 cut(s)	68
MscI	TGGCCA	1 cut(s)	68
MslI	CAYNNNNRTG	1 cut(s)	74
Msp20I	TGGCCA	1 cut(s)	68
MspA1I	CMGCKG	1 cut(s)	179
MspR9I	CCNGG	1 cut(s)	91
MvaI	CCWGG	1 cut(s)	91
MvnI	CGCG	1 cut(s)	138
NcoI	CCATGG	1 cut(s)	114
NlaIII	CATG	1 cut(s)	118
NlaIV	GGNNCC	1 cut(s)	46
NruI	TCGCGA	1 cut(s)	138
PcsI	WCGNNNNNNNCGW	2 cut(s)	26, 153
PflFI	GACNNNGTC	2 cut(s)	155, 158
PkrI	GCNGC	3 cut(s)	24, 112, 181
Psp6I	CCWGG	1 cut(s)	89
PspGI	CCWGG	1 cut(s)	89
PspN4I	GGNNCC	1 cut(s)	46
PsyI	GACNNNGTC	2 cut(s)	155, 158
RruI	TCGCGA	1 cut(s)	138
RseI	CAYNNNNRTG	1 cut(s)	74
SatI	GCNGC	3 cut(s)	23, 111, 180
ScrFI	CCNGG	1 cut(s)	91
SduI	GDGCHC	1 cut(s)	49
SetI	ASST	2 cut(s)	105, 159
SmiMI	CAYNNNNRTG	1 cut(s)	74
SsiI	CCGC	3 cut(s)	53, 111, 177
SspMI	CTAG	1 cut(s)	50
StyD4I	CCNGG	1 cut(s)	89
StyI	CCWWGG	1 cut(s)	114
TaiI	ACGT	1 cut(s)	159
TauI	GCSGC	1 cut(s)	113
TseI	GCWGC	2 cut(s)	22, 179
Tth111I	GACNNNGTC	2 cut(s)	155, 158
XspI	CTAG	1 cut(s)	50
ZraI	GACGTC	1 cut(s)	157

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.