Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0015841

Physical Location & Seq

Genomic Coordinates Reverse (-)

40721804 .. 40722073

Gene Structure 270 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1287600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 270 bp

ATGGGAAAAGCGTCGGGAGCGAAGCAAGCGGCGGTGGTGTTCGGAGCCCTAGCCGTCGGATGGCTGGCCATAGAGCTCGCCTTCAAGCCCTTCCTCGACAAAGCCCGCTCCGGCATGAACAAGTCCGACCCGGCCCGCGATCCCGACGAAGACGATGTCGTCAAGGCTGCCGAGGCCACCGTTAAAGCTGCCGAGGCCACGGTTAAAGCTGCCCAGGCCACCGTTAAAGCTGCCGAGATCGCCGTCGACGAAGCCTCTGCACCTCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009707 GO:0009941 GO:0016020 GO:0016021 GO:0019867 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031350 GO:0031351 GO:0031354 GO:0031355 GO:0031358 GO:0031359 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0042170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

90

Amino Acids

9.04

Weight (kDa)

5.01

Isoelectric Point (pI)

27.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0015841)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52420
fragaria_vesca	FvH4_2g23750
malus_domestica	MD03G1267100.v1.1 MD11G1287600.v1.1
prunus_persica	Prupe.8G242800_v2.0.a1
pyrus_communis	pycom11g25500
rosa_chinensis	RchiOBHm_Chr6g0291241
rosa_multiflora	Rmu_sc0013203.1_g000028
rosa_roxburghii	Rroxscaffold_7G00176210
rosa_rugosa	Rorug06G0218600
rosa_samantha	Rh6AG329700 Rh6BG336900 Rh6CG343200 Rh6DG330300
rosa_wichuraiana	Rw6G028650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	158
AccBSI	CCGCTC	1 cut(s)	108
AccI	GTMKAC	1 cut(s)	246
AccII	CGCG	1 cut(s)	138
AciI	CCGC	4 cut(s)	29, 32, 106, 136
AclWI	GGATC	1 cut(s)	134
AcoI	YGGCCR	1 cut(s)	66
AfiI	CCNNNNNNNGG	1 cut(s)	60
AgsI	TTSAA	1 cut(s)	85
AjnI	CCWGG	1 cut(s)	213
AluBI	AGCT	4 cut(s)	76, 188, 209, 230
AluI	AGCT	4 cut(s)	76, 188, 209, 230
Alw21I	GWGCWC	1 cut(s)	78
AlwI	GGATC	1 cut(s)	134
AoxI	GGCC	5 cut(s)	66, 132, 174, 195, 216
ApeKI	GCWGC	4 cut(s)	167, 188, 209, 230
ArsI	GACNNNNNNTTYG	2 cut(s)	141, 173
AspS9I	GGNCC	1 cut(s)	133
AsuC2I	CCSGG	1 cut(s)	131
BalI	TGGCCA	1 cut(s)	68
BanII	GRGCYC	2 cut(s)	49, 78
BbsI	GAAGAC	1 cut(s)	156
Bbv12I	GWGCWC	1 cut(s)	78
BbvI	GCAGC	4 cut(s)	154, 175, 196, 217
BccI	CCATC	1 cut(s)	54
BceAI	ACGGC	2 cut(s)	38, 227
BcgI	CGANNNNNNTGC	1 cut(s)	239
BciT130I	CCWGG	1 cut(s)	215
BcnI	CCSGG	1 cut(s)	131
BfaI	CTAG	1 cut(s)	50
BisI	GCNGC	5 cut(s)	30, 168, 189, 210, 231
BlsI	GCNGC	5 cut(s)	31, 169, 190, 211, 232
Bme1390I	CCNGG	2 cut(s)	131, 215
BmgT120I	GGNCC	1 cut(s)	133
BmiI	GGNNCC	1 cut(s)	46
BmrFI	CCNGG	2 cut(s)	131, 215
BpiI	GAAGAC	1 cut(s)	156
BpuMI	CCSGG	1 cut(s)	131
BsaJI	CCNNGG	4 cut(s)	171, 192, 198, 213
Bsc4I	CCNNNNNNNGG	1 cut(s)	60
BseBI	CCWGG	1 cut(s)	215
BseDI	CCNNGG	4 cut(s)	171, 192, 198, 213
BseGI	GGATG	1 cut(s)	65
BseLI	CCNNNNNNNGG	1 cut(s)	60
BseXI	GCAGC	4 cut(s)	154, 175, 196, 217
BsgI	GTGCAG	1 cut(s)	243
Bsh1236I	CGCG	1 cut(s)	138
BshFI	GGCC	5 cut(s)	68, 134, 176, 197, 218
BsiHKAI	GWGCWC	1 cut(s)	78
BsiSI	CCGG	2 cut(s)	111, 131
BslI	CCNNNNNNNGG	1 cut(s)	60
BsnI	GGCC	5 cut(s)	68, 134, 176, 197, 218
Bsp1286I	GDGCHC	2 cut(s)	49, 78
Bsp143I	GATC	2 cut(s)	139, 237
BspACI	CCGC	4 cut(s)	29, 32, 106, 136
BspANI	GGCC	5 cut(s)	68, 134, 176, 197, 218
BspFNI	CGCG	1 cut(s)	138
BspLI	GGNNCC	1 cut(s)	46
BspPI	GGATC	1 cut(s)	134
BsrBI	CCGCTC	1 cut(s)	108
BssECI	CCNNGG	4 cut(s)	171, 192, 198, 213
BssMI	GATC	2 cut(s)	139, 237
Bst2UI	CCWGG	1 cut(s)	215
Bst4CI	ACNGT	3 cut(s)	181, 202, 223
BstC8I	GCNNGC	5 cut(s)	27, 66, 78, 106, 136
BstDSI	CCRYGG	1 cut(s)	198
BstF5I	GGATG	1 cut(s)	65
BstFNI	CGCG	1 cut(s)	138
BstKTI	GATC	2 cut(s)	142, 240
BstMBI	GATC	2 cut(s)	139, 237
BstMWI	GCNNNNNNNGC	6 cut(s)	17, 26, 173, 194, 215, 239
BstNI	CCWGG	1 cut(s)	215
BstSCI	CCNGG	2 cut(s)	129, 213
BstUI	CGCG	1 cut(s)	138
BstV1I	GCAGC	4 cut(s)	154, 175, 196, 217
BstV2I	GAAGAC	1 cut(s)	156
BsuRI	GGCC	5 cut(s)	68, 134, 176, 197, 218
BtgI	CCRYGG	1 cut(s)	198
BtsCI	GGATG	1 cut(s)	65
Cac8I	GCNNGC	5 cut(s)	27, 66, 78, 106, 136
Cfr13I	GGNCC	1 cut(s)	133
CviAII	CATG	1 cut(s)	115
DpnI	GATC	2 cut(s)	141, 239
DpnII	GATC	2 cut(s)	139, 237
DrdI	GACNNNNNNGTC	1 cut(s)	158
DseDI	GACNNNNNNGTC	1 cut(s)	158
EaeI	YGGCCR	1 cut(s)	66
Ecl136II	GAGCTC	1 cut(s)	76
Eco24I	GRGCYC	2 cut(s)	49, 78
Eco53kI	GAGCTC	1 cut(s)	76
EcoICRI	GAGCTC	1 cut(s)	76
EcoRII	CCWGG	1 cut(s)	213
EcoT38I	GRGCYC	2 cut(s)	49, 78
FaeI	CATG	1 cut(s)	118
FaiI	YATR	2 cut(s)	71, 116
FatI	CATG	1 cut(s)	114
FauI	CCCGC	2 cut(s)	113, 143
FblI	GTMKAC	1 cut(s)	246
Fnu4HI	GCNGC	5 cut(s)	30, 168, 189, 210, 231
FokI	GGATG	1 cut(s)	72
FriOI	GRGCYC	2 cut(s)	49, 78
Fsp4HI	GCNGC	5 cut(s)	30, 168, 189, 210, 231
FspBI	CTAG	1 cut(s)	50
GluI	GCNGC	5 cut(s)	30, 168, 189, 210, 231
HaeIII	GGCC	5 cut(s)	68, 134, 176, 197, 218
HapII	CCGG	2 cut(s)	111, 131
Hin1II	CATG	1 cut(s)	118
HincII	GTYRAC	1 cut(s)	247
HindII	GTYRAC	1 cut(s)	247
HpaII	CCGG	2 cut(s)	111, 131
Hpy166II	GTNNAC	1 cut(s)	247
Hpy188I	TCNGA	3 cut(s)	44, 59, 127
Hpy188III	TCNNGA	2 cut(s)	15, 143
Hpy8I	GTNNAC	1 cut(s)	247
Hpy99I	CGWCG	5 cut(s)	16, 59, 149, 248, 251
HpyAV	CCTTC	2 cut(s)	91, 100
HpyCH4III	ACNGT	3 cut(s)	181, 202, 223
HpyCH4V	TGCA	1 cut(s)	260
HpyF10VI	GCNNNNNNNGC	6 cut(s)	17, 26, 173, 194, 215, 239
Hsp92II	CATG	1 cut(s)	118
Kzo9I	GATC	2 cut(s)	139, 237
LmnI	GCTCC	3 cut(s)	17, 44, 113
LpnPI	CCDG	5 cut(s)	50, 124, 144, 200, 227
Lsp1109I	GCAGC	4 cut(s)	154, 175, 196, 217
MaeI	CTAG	1 cut(s)	50
MalI	GATC	2 cut(s)	141, 239
MbiI	CCGCTC	1 cut(s)	108
MboI	GATC	2 cut(s)	139, 237
MboII	GAAGA	1 cut(s)	161
MhlI	GDGCHC	2 cut(s)	49, 78
MlsI	TGGCCA	1 cut(s)	68
MluNI	TGGCCA	1 cut(s)	68
MmeI	TCCRAC	2 cut(s)	37, 150
MnlI	CCTC	4 cut(s)	104, 166, 187, 265
Mox20I	TGGCCA	1 cut(s)	68
MscI	TGGCCA	1 cut(s)	68
MseI	TTAA	3 cut(s)	183, 204, 225
Msp20I	TGGCCA	1 cut(s)	68
MspI	CCGG	2 cut(s)	111, 131
MspR9I	CCNGG	2 cut(s)	131, 215
MvaI	CCWGG	1 cut(s)	215
MvnI	CGCG	1 cut(s)	138
MwoI	GCNNNNNNNGC	6 cut(s)	17, 26, 173, 194, 215, 239
NciI	CCSGG	1 cut(s)	131
NdeII	GATC	2 cut(s)	139, 237
NlaIII	CATG	1 cut(s)	118
NlaIV	GGNNCC	1 cut(s)	46
NmeAIII	GCCGAG	3 cut(s)	196, 217, 259
PcsI	WCGNNNNNNNCGW	1 cut(s)	246
PflFI	GACNNNGTC	1 cut(s)	155
PkrI	GCNGC	5 cut(s)	31, 169, 190, 211, 232
Psp124BI	GAGCTC	1 cut(s)	78
Psp6I	CCWGG	1 cut(s)	213
PspGI	CCWGG	1 cut(s)	213
PspN4I	GGNNCC	1 cut(s)	46
PspPI	GGNCC	1 cut(s)	133
PsyI	GACNNNGTC	1 cut(s)	155
SacI	GAGCTC	1 cut(s)	78
SalI	GTCGAC	1 cut(s)	245
SaqAI	TTAA	3 cut(s)	183, 204, 225
SatI	GCNGC	5 cut(s)	30, 168, 189, 210, 231
Sau3AI	GATC	2 cut(s)	139, 237
Sau96I	GGNCC	1 cut(s)	133
ScrFI	CCNGG	2 cut(s)	131, 215
SduI	GDGCHC	2 cut(s)	49, 78
SetI	ASST	5 cut(s)	78, 190, 211, 232, 265
SgrDI	CGTCGACG	1 cut(s)	245
SsiI	CCGC	4 cut(s)	29, 32, 106, 136
SspMI	CTAG	1 cut(s)	50
SstI	GAGCTC	1 cut(s)	78
StyD4I	CCNGG	2 cut(s)	129, 213
TaaI	ACNGT	3 cut(s)	181, 202, 223
TaqI	TCGA	2 cut(s)	96, 246
TauI	GCSGC	1 cut(s)	32
Tru1I	TTAA	3 cut(s)	183, 204, 225
Tru9I	TTAA	3 cut(s)	183, 204, 225
TseI	GCWGC	4 cut(s)	167, 188, 209, 230
TspDTI	ATGAA	1 cut(s)	131
Tth111I	GACNNNGTC	1 cut(s)	155
XmiI	GTMKAC	1 cut(s)	246
XspI	CTAG	1 cut(s)	50

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.