Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0015841

Physical Location & Seq

Genomic Coordinates Reverse (-)

35222287 .. 35222523

Gene Structure 237 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1267100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 237 bp

ATGGGGAAAGCGTCGGGAGCGAAGCAAGCGGCGGTGGTGTTCGGAGCCCTAGCCGTCGGCTGGCTGGCCATAGAGCTTGCCTTCAAGCCCTTCCTCGACAAGGCCCGCGCCGCCATGAACAAGTCCGACCCGGCCCGCGCCGCCATGAACAAGTCCGACCCGGCCCGCGATCCCGACGAAGACGACGCCGTCAAACCCGCTTATACCGCCGCCGACGAAGCCTCTGGAACTCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009707 GO:0009941 GO:0016020 GO:0016021 GO:0019867 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031350 GO:0031351 GO:0031354 GO:0031355 GO:0031358 GO:0031359 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0042170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

79

Amino Acids

8.05

Weight (kDa)

5.19

Isoelectric Point (pI)

26.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0015841)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52420
fragaria_vesca	FvH4_2g23750
malus_domestica	MD03G1267100.v1.1 MD11G1287600.v1.1
prunus_persica	Prupe.8G242800_v2.0.a1
pyrus_communis	pycom11g25500
rosa_chinensis	RchiOBHm_Chr6g0291241
rosa_multiflora	Rmu_sc0013203.1_g000028
rosa_roxburghii	Rroxscaffold_7G00176210
rosa_rugosa	Rorug06G0218600
rosa_samantha	Rh6AG329700 Rh6BG336900 Rh6CG343200 Rh6DG330300
rosa_wichuraiana	Rw6G028650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	188
AccII	CGCG	3 cut(s)	108, 138, 168
AclWI	GGATC	1 cut(s)	164
AcoI	YGGCCR	1 cut(s)	66
AcyI	GRCGYC	1 cut(s)	186
AfiI	CCNNNNNNNGG	2 cut(s)	60, 100
AgsI	TTSAA	1 cut(s)	85
AluBI	AGCT	1 cut(s)	76
AluI	AGCT	1 cut(s)	76
AlwI	GGATC	1 cut(s)	164
AoxI	GGCC	4 cut(s)	66, 102, 132, 162
AspLEI	GCGC	2 cut(s)	110, 140
AspS9I	GGNCC	3 cut(s)	103, 133, 163
AsuC2I	CCSGG	2 cut(s)	131, 161
BalI	TGGCCA	1 cut(s)	68
BanII	GRGCYC	1 cut(s)	49
BbsI	GAAGAC	1 cut(s)	186
BceAI	ACGGC	2 cut(s)	38, 173
BcnI	CCSGG	2 cut(s)	131, 161
BfaI	CTAG	1 cut(s)	50
BisI	GCNGC	4 cut(s)	30, 111, 141, 210
BlsI	GCNGC	4 cut(s)	31, 112, 142, 211
Bme1390I	CCNGG	2 cut(s)	131, 161
BmgT120I	GGNCC	3 cut(s)	103, 133, 163
BmiI	GGNNCC	1 cut(s)	46
BmrFI	CCNGG	2 cut(s)	131, 161
BpiI	GAAGAC	1 cut(s)	186
BpuMI	CCSGG	2 cut(s)	131, 161
BsaHI	GRCGYC	1 cut(s)	186
Bsc4I	CCNNNNNNNGG	2 cut(s)	60, 100
BseLI	CCNNNNNNNGG	2 cut(s)	60, 100
Bsh1236I	CGCG	3 cut(s)	108, 138, 168
BshFI	GGCC	4 cut(s)	68, 104, 134, 164
BsiSI	CCGG	2 cut(s)	131, 161
BslI	CCNNNNNNNGG	2 cut(s)	60, 100
BsnI	GGCC	4 cut(s)	68, 104, 134, 164
Bsp1286I	GDGCHC	1 cut(s)	49
Bsp143I	GATC	1 cut(s)	169
BspANI	GGCC	4 cut(s)	68, 104, 134, 164
BspFNI	CGCG	3 cut(s)	108, 138, 168
BspLI	GGNNCC	1 cut(s)	46
BspPI	GGATC	1 cut(s)	164
BssMI	GATC	1 cut(s)	169
BssNI	GRCGYC	1 cut(s)	186
BstACI	GRCGYC	1 cut(s)	186
BstC8I	GCNNGC	7 cut(s)	27, 62, 66, 78, 106, 136, 166
BstENI	CCTNNNNNAGG	1 cut(s)	98
BstFNI	CGCG	3 cut(s)	108, 138, 168
BstHHI	GCGC	2 cut(s)	110, 140
BstKTI	GATC	1 cut(s)	172
BstMBI	GATC	1 cut(s)	169
BstMWI	GCNNNNNNNGC	6 cut(s)	17, 26, 110, 140, 206, 218
BstSCI	CCNGG	2 cut(s)	129, 159
BstUI	CGCG	3 cut(s)	108, 138, 168
BstV2I	GAAGAC	1 cut(s)	186
BsuRI	GGCC	4 cut(s)	68, 104, 134, 164
Cac8I	GCNNGC	7 cut(s)	27, 62, 66, 78, 106, 136, 166
CfoI	GCGC	2 cut(s)	110, 140
Cfr13I	GGNCC	3 cut(s)	103, 133, 163
CseI	GACGC	1 cut(s)	194
CviAII	CATG	2 cut(s)	115, 145
DpnI	GATC	1 cut(s)	171
DpnII	GATC	1 cut(s)	169
DrdI	GACNNNNNNGTC	1 cut(s)	188
DseDI	GACNNNNNNGTC	1 cut(s)	188
EaeI	YGGCCR	1 cut(s)	66
Eco24I	GRGCYC	1 cut(s)	49
EcoNI	CCTNNNNNAGG	1 cut(s)	98
EcoT38I	GRGCYC	1 cut(s)	49
FaeI	CATG	2 cut(s)	118, 148
FaiI	YATR	4 cut(s)	71, 116, 146, 204
FatI	CATG	2 cut(s)	114, 144
FauI	CCCGC	4 cut(s)	113, 143, 173, 205
Fnu4HI	GCNGC	4 cut(s)	30, 111, 141, 210
FriOI	GRGCYC	1 cut(s)	49
Fsp4HI	GCNGC	4 cut(s)	30, 111, 141, 210
FspBI	CTAG	1 cut(s)	50
GlaI	GCGC	2 cut(s)	109, 139
GluI	GCNGC	4 cut(s)	30, 111, 141, 210
HaeIII	GGCC	4 cut(s)	68, 104, 134, 164
HapII	CCGG	2 cut(s)	131, 161
HgaI	GACGC	1 cut(s)	194
HhaI	GCGC	2 cut(s)	110, 140
Hin1I	GRCGYC	1 cut(s)	186
Hin1II	CATG	2 cut(s)	118, 148
Hin6I	GCGC	2 cut(s)	108, 138
HinP1I	GCGC	2 cut(s)	108, 138
HpaII	CCGG	2 cut(s)	131, 161
Hpy188I	TCNGA	3 cut(s)	44, 127, 157
Hpy188III	TCNNGA	3 cut(s)	15, 173, 225
Hpy99I	CGWCG	5 cut(s)	16, 59, 179, 188, 218
HpyAV	CCTTC	2 cut(s)	91, 100
HpyF10VI	GCNNNNNNNGC	6 cut(s)	17, 26, 110, 140, 206, 218
Hsp92I	GRCGYC	1 cut(s)	186
Hsp92II	CATG	2 cut(s)	118, 148
HspAI	GCGC	2 cut(s)	108, 138
Kzo9I	GATC	1 cut(s)	169
LmnI	GCTCC	2 cut(s)	17, 44
LpnPI	CCDG	5 cut(s)	46, 50, 144, 174, 210
MaeI	CTAG	1 cut(s)	50
MalI	GATC	1 cut(s)	171
MboI	GATC	1 cut(s)	169
MboII	GAAGA	1 cut(s)	191
MhlI	GDGCHC	1 cut(s)	49
MlsI	TGGCCA	1 cut(s)	68
MluNI	TGGCCA	1 cut(s)	68
MmeI	TCCRAC	2 cut(s)	150, 180
MnlI	CCTC	2 cut(s)	104, 232
Mox20I	TGGCCA	1 cut(s)	68
MscI	TGGCCA	1 cut(s)	68
Msp20I	TGGCCA	1 cut(s)	68
MspI	CCGG	2 cut(s)	131, 161
MspR9I	CCNGG	2 cut(s)	131, 161
MvnI	CGCG	3 cut(s)	108, 138, 168
MwoI	GCNNNNNNNGC	6 cut(s)	17, 26, 110, 140, 206, 218
NciI	CCSGG	2 cut(s)	131, 161
NdeII	GATC	1 cut(s)	169
NlaIII	CATG	2 cut(s)	118, 148
NlaIV	GGNNCC	1 cut(s)	46
PflFI	GACNNNGTC	1 cut(s)	188
PkrI	GCNGC	4 cut(s)	31, 112, 142, 211
PspN4I	GGNNCC	1 cut(s)	46
PspPI	GGNCC	3 cut(s)	103, 133, 163
PsyI	GACNNNGTC	1 cut(s)	188
SatI	GCNGC	4 cut(s)	30, 111, 141, 210
Sau3AI	GATC	1 cut(s)	169
Sau96I	GGNCC	3 cut(s)	103, 133, 163
ScrFI	CCNGG	2 cut(s)	131, 161
SduI	GDGCHC	1 cut(s)	49
SetI	ASST	1 cut(s)	78
SspMI	CTAG	1 cut(s)	50
StyD4I	CCNGG	2 cut(s)	129, 159
TaqI	TCGA	1 cut(s)	96
TauI	GCSGC	4 cut(s)	32, 113, 143, 212
TspDTI	ATGAA	2 cut(s)	131, 161
Tth111I	GACNNNGTC	1 cut(s)	188
XagI	CCTNNNNNAGG	1 cut(s)	98
XspI	CTAG	1 cut(s)	50

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.