Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0015841

Physical Location & Seq

Genomic Coordinates Reverse (-)

57010643 .. 57010852

Gene Structure 210 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG336900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 210 bp

ATGGCGAAATCTTCAGCTACGAAGCAAGCGGCGATTGTGCTCGGAGCCCTGGCGGTCGGATGGTTGGCCATAGAGCTCGCCTTCAAGCCCATCCTTGACAAGGCCCGATCCGCCATGAACAAGTCTGACCCGGCCCGCGATCCCGACGACGACGTCGTCGAGGGGGAGGATACCGCCACCAAGACTGACGAGACCCCCAAGGATGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009707 GO:0009941 GO:0016020 GO:0016021 GO:0019867 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031350 GO:0031351 GO:0031354 GO:0031355 GO:0031358 GO:0031359 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0042170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

69

Amino Acids

7.26

Weight (kDa)

4.55

Isoelectric Point (pI)

33.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0015841)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52420
fragaria_vesca	FvH4_2g23750
malus_domestica	MD03G1267100.v1.1 MD11G1287600.v1.1
prunus_persica	Prupe.8G242800_v2.0.a1
pyrus_communis	pycom11g25500
rosa_chinensis	RchiOBHm_Chr6g0291241
rosa_multiflora	Rmu_sc0013203.1_g000028
rosa_roxburghii	Rroxscaffold_7G00176210
rosa_rugosa	Rorug06G0218600
rosa_samantha	Rh6AG329700 Rh6BG336900 Rh6CG343200 Rh6DG330300
rosa_wichuraiana	Rw6G028650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	152, 155
AatII	GACGTC	1 cut(s)	156
AccII	CGCG	1 cut(s)	138
AciI	CCGC	5 cut(s)	29, 53, 111, 136, 174
AclWI	GGATC	2 cut(s)	102, 134
AcoI	YGGCCR	1 cut(s)	66
AcyI	GRCGYC	1 cut(s)	153
AfiI	CCNNNNNNNGG	1 cut(s)	100
AgsI	TTSAA	1 cut(s)	85
AjnI	CCWGG	1 cut(s)	48
AluBI	AGCT	2 cut(s)	17, 76
AluI	AGCT	2 cut(s)	17, 76
Alw21I	GWGCWC	2 cut(s)	42, 78
Alw26I	GTCTC	1 cut(s)	185
AlwI	GGATC	2 cut(s)	102, 134
AoxI	GGCC	3 cut(s)	66, 102, 132
AspS9I	GGNCC	2 cut(s)	103, 133
AsuC2I	CCSGG	1 cut(s)	131
BalI	TGGCCA	1 cut(s)	68
BanII	GRGCYC	2 cut(s)	49, 78
Bbv12I	GWGCWC	2 cut(s)	42, 78
BccI	CCATC	2 cut(s)	54, 98
BciT130I	CCWGG	1 cut(s)	50
BciVI	GTATCC	1 cut(s)	163
BcnI	CCSGG	1 cut(s)	131
BcoDI	GTCTC	1 cut(s)	185
BfuI	GTATCC	1 cut(s)	163
BisI	GCNGC	1 cut(s)	30
BlsI	GCNGC	1 cut(s)	31
Bme1390I	CCNGG	2 cut(s)	50, 131
BmgT120I	GGNCC	2 cut(s)	103, 133
BmiI	GGNNCC	1 cut(s)	46
BmrFI	CCNGG	2 cut(s)	50, 131
BmsI	GCATC	1 cut(s)	193
BpuMI	CCSGG	1 cut(s)	131
BsaHI	GRCGYC	1 cut(s)	153
BsaI	GGTCTC	1 cut(s)	185
BsaJI	CCNNGG	2 cut(s)	48, 198
Bsc4I	CCNNNNNNNGG	1 cut(s)	100
BseBI	CCWGG	1 cut(s)	50
BseDI	CCNNGG	2 cut(s)	48, 198
BseGI	GGATG	3 cut(s)	65, 90, 208
BseLI	CCNNNNNNNGG	1 cut(s)	100
Bsh1236I	CGCG	1 cut(s)	138
Bsh1285I	CGRYCG	1 cut(s)	57
BshFI	GGCC	3 cut(s)	68, 104, 134
BsiEI	CGRYCG	1 cut(s)	57
BsiHKAI	GWGCWC	2 cut(s)	42, 78
BsiSI	CCGG	1 cut(s)	131
BslI	CCNNNNNNNGG	1 cut(s)	100
BsmAI	GTCTC	1 cut(s)	185
BsnI	GGCC	3 cut(s)	68, 104, 134
Bso31I	GGTCTC	1 cut(s)	185
Bsp1286I	GDGCHC	3 cut(s)	42, 49, 78
Bsp143I	GATC	2 cut(s)	107, 139
BspACI	CCGC	5 cut(s)	29, 53, 111, 136, 174
BspANI	GGCC	3 cut(s)	68, 104, 134
BspFNI	CGCG	1 cut(s)	138
BspLI	GGNNCC	1 cut(s)	46
BspPI	GGATC	2 cut(s)	102, 134
BspTNI	GGTCTC	1 cut(s)	185
BssECI	CCNNGG	2 cut(s)	48, 198
BssMI	GATC	2 cut(s)	107, 139
BssNI	GRCGYC	1 cut(s)	153
BssT1I	CCWWGG	1 cut(s)	198
Bst2UI	CCWGG	1 cut(s)	50
BstACI	GRCGYC	1 cut(s)	153
BstC8I	GCNNGC	3 cut(s)	27, 78, 136
BstENI	CCTNNNNNAGG	1 cut(s)	98
BstF5I	GGATG	3 cut(s)	65, 90, 208
BstFNI	CGCG	1 cut(s)	138
BstKTI	GATC	2 cut(s)	110, 142
BstMAI	GTCTC	1 cut(s)	185
BstMBI	GATC	2 cut(s)	107, 139
BstMCI	CGRYCG	1 cut(s)	57
BstMWI	GCNNNNNNNGC	1 cut(s)	110
BstNI	CCWGG	1 cut(s)	50
BstSCI	CCNGG	2 cut(s)	48, 129
BstUI	CGCG	1 cut(s)	138
BsuI	GTATCC	1 cut(s)	163
BsuRI	GGCC	3 cut(s)	68, 104, 134
BtsCI	GGATG	3 cut(s)	65, 90, 208
Cac8I	GCNNGC	3 cut(s)	27, 78, 136
Cfr13I	GGNCC	2 cut(s)	103, 133
CviAII	CATG	1 cut(s)	115
CviJI	RGCY	7 cut(s)	17, 47, 68, 76, 88, 104, 134
CviKI_1	RGCY	7 cut(s)	17, 47, 68, 76, 88, 104, 134
DpnI	GATC	2 cut(s)	109, 141
DpnII	GATC	2 cut(s)	107, 139
DrdI	GACNNNNNNGTC	2 cut(s)	152, 155
DseDI	GACNNNNNNGTC	2 cut(s)	152, 155
EaeI	YGGCCR	1 cut(s)	66
EciI	GGCGGA	1 cut(s)	100
Ecl136II	GAGCTC	1 cut(s)	76
Eco130I	CCWWGG	1 cut(s)	198
Eco24I	GRGCYC	2 cut(s)	49, 78
Eco31I	GGTCTC	1 cut(s)	185
Eco53kI	GAGCTC	1 cut(s)	76
EcoICRI	GAGCTC	1 cut(s)	76
EcoNI	CCTNNNNNAGG	1 cut(s)	98
EcoRII	CCWGG	1 cut(s)	48
EcoT14I	CCWWGG	1 cut(s)	198
EcoT38I	GRGCYC	2 cut(s)	49, 78
ErhI	CCWWGG	1 cut(s)	198
FaeI	CATG	1 cut(s)	118
FaiI	YATR	2 cut(s)	71, 116
FatI	CATG	1 cut(s)	114
FauI	CCCGC	1 cut(s)	143
Fnu4HI	GCNGC	1 cut(s)	30
FokI	GGATG	2 cut(s)	72, 77
FriOI	GRGCYC	2 cut(s)	49, 78
Fsp4HI	GCNGC	1 cut(s)	30
GluI	GCNGC	1 cut(s)	30
HaeIII	GGCC	3 cut(s)	68, 104, 134
HapII	CCGG	1 cut(s)	131
Hin1I	GRCGYC	1 cut(s)	153
Hin1II	CATG	1 cut(s)	118
HpaII	CCGG	1 cut(s)	131
Hpy188I	TCNGA	3 cut(s)	44, 59, 127
Hpy188III	TCNNGA	1 cut(s)	143
Hpy99I	CGWCG	5 cut(s)	149, 152, 155, 158, 161
HpyAV	CCTTC	1 cut(s)	91
HpyCH4IV	ACGT	1 cut(s)	153
HpyF10VI	GCNNNNNNNGC	1 cut(s)	110
HpySE526I	ACGT	1 cut(s)	153
Hsp92I	GRCGYC	1 cut(s)	153
Hsp92II	CATG	1 cut(s)	118
Kzo9I	GATC	2 cut(s)	107, 139
LmnI	GCTCC	1 cut(s)	44
LpnPI	CCDG	3 cut(s)	35, 62, 144
LweI	GCATC	1 cut(s)	193
MaeII	ACGT	1 cut(s)	153
MalI	GATC	2 cut(s)	109, 141
MboI	GATC	2 cut(s)	107, 139
MboII	GAAGA	1 cut(s)	3
MhlI	GDGCHC	3 cut(s)	42, 49, 78
MlsI	TGGCCA	1 cut(s)	68
MluNI	TGGCCA	1 cut(s)	68
MmeI	TCCRAC	1 cut(s)	37
MnlI	CCTC	2 cut(s)	154, 160
Mox20I	TGGCCA	1 cut(s)	68
MscI	TGGCCA	1 cut(s)	68
Msp20I	TGGCCA	1 cut(s)	68
MspI	CCGG	1 cut(s)	131
MspR9I	CCNGG	2 cut(s)	50, 131
MvaI	CCWGG	1 cut(s)	50
MvnI	CGCG	1 cut(s)	138
MwoI	GCNNNNNNNGC	1 cut(s)	110
NciI	CCSGG	1 cut(s)	131
NdeII	GATC	2 cut(s)	107, 139
NlaIII	CATG	1 cut(s)	118
NlaIV	GGNNCC	1 cut(s)	46
PcsI	WCGNNNNNNNCGW	2 cut(s)	153, 156
PflFI	GACNNNGTC	2 cut(s)	152, 155
PkrI	GCNGC	1 cut(s)	31
Psp124BI	GAGCTC	1 cut(s)	78
Psp6I	CCWGG	1 cut(s)	48
PspGI	CCWGG	1 cut(s)	48
PspN4I	GGNNCC	1 cut(s)	46
PspPI	GGNCC	2 cut(s)	103, 133
PsyI	GACNNNGTC	2 cut(s)	152, 155
SacI	GAGCTC	1 cut(s)	78
SatI	GCNGC	1 cut(s)	30
Sau3AI	GATC	2 cut(s)	107, 139
Sau96I	GGNCC	2 cut(s)	103, 133
ScrFI	CCNGG	2 cut(s)	50, 131
SduI	GDGCHC	3 cut(s)	42, 49, 78
SetI	ASST	3 cut(s)	19, 78, 156
SfaNI	GCATC	1 cut(s)	193
SsiI	CCGC	5 cut(s)	29, 53, 111, 136, 174
SstI	GAGCTC	1 cut(s)	78
StyD4I	CCNGG	2 cut(s)	48, 129
StyI	CCWWGG	1 cut(s)	198
TaiI	ACGT	1 cut(s)	156
TaqI	TCGA	1 cut(s)	159
TauI	GCSGC	1 cut(s)	32
TspDTI	ATGAA	1 cut(s)	131
Tth111I	GACNNNGTC	2 cut(s)	152, 155
XagI	CCTNNNNNAGG	1 cut(s)	98
ZraI	GACGTC	1 cut(s)	154

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.