Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0014666

Physical Location & Seq

Genomic Coordinates Forward (+)

21878543 .. 21882775

Gene Structure 4233 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g27640.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGAGCTTCTTGCGGCCCTCTGCTTTGTACCAGTGCCTACTTGCGTACCCTTCGCTGCGTTGGATGCCGTGTCAGAGTTGGGAGTTTCTCCGGTGGCCGGGGCTCGATGGGTTCATGAGACTCTTGGTGGTGGTGCTTCTCTGGACTATGTTTTCCGAAATCCGGTTCATTCCATCTTCTTCTATGTACCCGACTCTTCGTGTTGGTGATCGAGTCCTGGTTGAAAAGGCCTCATTATTCTTCAGATCCCCTGCTTTGCATGATATTGTAACATTTCGAGATCCAACACAGGAACCTGGAGACTTGGAACAGACTGTTTTCATAAAGAGGATTGTCGCAAAAGCTGGAGACTTGGTTGAGGTTCGGAATGGATGGCTCTATGTCAATGGTATTGCACAGAAAGAAGATTTTATAGCAGAACCACCCACATATGTATTAAATTTGACTTATGTGCCTGAAGGCCATGTATATGTGCTGGGTGACAACCGTAACAACAGCTACGATTCTCATGTTTGGGGACCCCTTCCAACGAAAAACATCATGGCAAGATATGTCACGTGTTGTCACAGACCTCTACGCAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006508 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008233 GO:0009507 GO:0009526 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009657 GO:0009668 GO:0009987 GO:0010027 GO:0010467 GO:0016020 GO:0016043 GO:0016787 GO:0019538 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0051604 GO:0055035 GO:0061024 GO:0071704 GO:0071840 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko02024 ko03060 map02024 map03060

Pfam Domains

Protein Families

Peptidase_S24 Peptidase_S26

Protein Analysis

195

Amino Acids

22.45

Weight (kDa)

8.36

Isoelectric Point (pI)

61.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_S26	PF10502	38 - 128	1.9e-16	Signal peptidase, peptidase S26

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0014666)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g27640
prunus_persica	Prupe.1G491400_v2.0.a1 Prupe.1G491400_v2.0.a1 Prupe.1G491400_v2.0.a1 Prupe.1G491400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0296471
rosa_laevigata	RLG00000011689
rosa_multiflora	Rmu_sc0006967.1_g000010
rosa_roxburghii	Rroxscaffold_7G00171510 Rroxscaffold_7G00178610
rosa_rugosa	Rorug06G0262600 Rorug06G0262700
rosa_samantha	Rh6AG374000 Rh6BG382600 Rh6CG387400 Rh6DG375200
rosa_wichuraiana	Rw6G032620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	13
AclWI	GGATC	2 cut(s)	240, 275
AcoI	YGGCCR	1 cut(s)	95
AcsI	RAATTY	1 cut(s)	439
AcuI	CTGAAG	2 cut(s)	226, 477
AcvI	CACGTG	1 cut(s)	558
AfaI	GTAC	3 cut(s)	29, 47, 188
AfiI	CCNNNNNNNGG	2 cut(s)	97, 162
AflIII	ACRYGT	1 cut(s)	557
AgsI	TTSAA	1 cut(s)	224
AjnI	CCWGG	2 cut(s)	216, 295
AluBI	AGCT	3 cut(s)	6, 344, 498
AluI	AGCT	3 cut(s)	6, 344, 498
Alw26I	GTCTC	3 cut(s)	112, 294, 342
AlwI	GGATC	2 cut(s)	240, 275
AoxI	GGCC	4 cut(s)	14, 95, 228, 460
ApeKI	GCWGC	1 cut(s)	55
ApoI	RAATTY	1 cut(s)	439
AspS9I	GGNCC	2 cut(s)	15, 518
AsuC2I	CCSGG	1 cut(s)	99
AsuHPI	GGTGA	2 cut(s)	218, 491
AvaII	GGWCC	1 cut(s)	518
BaeI	ACNNNNGTAYC	2 cut(s)	29, 62
BanII	GRGCYC	1 cut(s)	105
BbrPI	CACGTG	1 cut(s)	558
BbvI	GCAGC	1 cut(s)	42
BccI	CCATC	3 cut(s)	101, 181, 366
BceAI	ACGGC	1 cut(s)	52
BciT130I	CCWGG	2 cut(s)	218, 297
BcnI	CCSGG	1 cut(s)	99
BcoDI	GTCTC	3 cut(s)	112, 294, 342
BisI	GCNGC	2 cut(s)	14, 56
BlsI	GCNGC	2 cut(s)	15, 57
Bme1390I	CCNGG	3 cut(s)	99, 218, 297
Bme18I	GGWCC	1 cut(s)	518
BmgT120I	GGNCC	2 cut(s)	15, 518
BmiI	GGNNCC	3 cut(s)	294, 519, 520
BmrFI	CCNGG	3 cut(s)	99, 218, 297
BmsI	GCATC	1 cut(s)	54
BpmI	CTGGAG	2 cut(s)	318, 366
BpuMI	CCSGG	1 cut(s)	99
BsaAI	YACGTR	1 cut(s)	558
BsaJI	CCNNGG	1 cut(s)	98
BsaWI	WCCGGW	2 cut(s)	90, 162
BsaXI	ACNNNNNCTCC	2 cut(s)	339, 369
Bsc4I	CCNNNNNNNGG	2 cut(s)	97, 162
Bse1I	ACTGG	1 cut(s)	31
BseBI	CCWGG	2 cut(s)	218, 297
BseDI	CCNNGG	1 cut(s)	98
BseGI	GGATG	2 cut(s)	69, 377
BseLI	CCNNNNNNNGG	2 cut(s)	97, 162
BseNI	ACTGG	1 cut(s)	31
BseXI	GCAGC	1 cut(s)	42
BseYI	CCCAGC	1 cut(s)	475
BshFI	GGCC	4 cut(s)	16, 97, 230, 462
BsiSI	CCGG	3 cut(s)	91, 98, 163
BslFI	GGGAC	1 cut(s)	531
BslI	CCNNNNNNNGG	2 cut(s)	97, 162
BsmAI	GTCTC	3 cut(s)	112, 294, 342
BsmFI	GGGAC	1 cut(s)	531
BsnI	GGCC	4 cut(s)	16, 97, 230, 462
Bsp1286I	GDGCHC	1 cut(s)	105
Bsp143I	GATC	3 cut(s)	208, 245, 280
BspACI	CCGC	1 cut(s)	13
BspANI	GGCC	4 cut(s)	16, 97, 230, 462
BspHI	TCATGA	1 cut(s)	114
BspLI	GGNNCC	3 cut(s)	294, 519, 520
BspPI	GGATC	2 cut(s)	240, 275
BsrI	ACTGG	1 cut(s)	31
BssECI	CCNNGG	1 cut(s)	98
BssMI	GATC	3 cut(s)	208, 245, 280
Bst2UI	CCWGG	2 cut(s)	218, 297
Bst4CI	ACNGT	2 cut(s)	316, 488
Bst6I	CTCTTC	1 cut(s)	201
BstBAI	YACGTR	1 cut(s)	558
BstF5I	GGATG	2 cut(s)	69, 377
BstKTI	GATC	3 cut(s)	211, 248, 283
BstMAI	GTCTC	3 cut(s)	112, 294, 342
BstMBI	GATC	3 cut(s)	208, 245, 280
BstMWI	GCNNNNNNNGC	1 cut(s)	64
BstNI	CCWGG	2 cut(s)	218, 297
BstSCI	CCNGG	3 cut(s)	97, 216, 295
BstV1I	GCAGC	1 cut(s)	42
BstX2I	RGATCY	2 cut(s)	245, 280
BstYI	RGATCY	2 cut(s)	245, 280
BsuRI	GGCC	4 cut(s)	16, 97, 230, 462
BtsCI	GGATG	2 cut(s)	69, 377
BtsIMutI	CAGTG	1 cut(s)	38
CciI	TCATGA	1 cut(s)	114
Cfr13I	GGNCC	2 cut(s)	15, 518
Csp6I	GTAC	3 cut(s)	28, 46, 187
CviAII	CATG	5 cut(s)	115, 260, 464, 509, 541
CviJI	RGCY	9 cut(s)	6, 16, 97, 103, 230, 344, 376, 462, 498
CviKI_1	RGCY	9 cut(s)	6, 16, 97, 103, 230, 344, 376, 462, 498
CviQI	GTAC	3 cut(s)	28, 46, 187
DpnI	GATC	3 cut(s)	210, 247, 282
DpnII	GATC	3 cut(s)	208, 245, 280
EaeI	YGGCCR	1 cut(s)	95
Eam1104I	CTCTTC	1 cut(s)	201
EarI	CTCTTC	1 cut(s)	201
Eco147I	AGGCCT	1 cut(s)	230
Eco24I	GRGCYC	1 cut(s)	105
Eco47I	GGWCC	1 cut(s)	518
Eco57I	CTGAAG	2 cut(s)	226, 477
Eco72I	CACGTG	1 cut(s)	558
EcoO109I	RGGNCCY	1 cut(s)	518
EcoRII	CCWGG	2 cut(s)	216, 295
EcoT38I	GRGCYC	1 cut(s)	105
FaeI	CATG	5 cut(s)	118, 263, 467, 512, 544
FaqI	GGGAC	1 cut(s)	531
FatI	CATG	5 cut(s)	114, 259, 463, 508, 540
FauNDI	CATATG	1 cut(s)	430
Fnu4HI	GCNGC	2 cut(s)	14, 56
FokI	GGATG	2 cut(s)	76, 384
FriOI	GRGCYC	1 cut(s)	105
Fsp4HI	GCNGC	2 cut(s)	14, 56
GluI	GCNGC	2 cut(s)	14, 56
GsaI	CCCAGC	1 cut(s)	479
GsuI	CTGGAG	2 cut(s)	318, 366
HaeIII	GGCC	4 cut(s)	16, 97, 230, 462
HapII	CCGG	3 cut(s)	91, 98, 163
Hin1II	CATG	5 cut(s)	118, 263, 467, 512, 544
HinfI	GANTC	4 cut(s)	120, 193, 213, 503
HpaII	CCGG	3 cut(s)	91, 98, 163
HphI	GGTGA	2 cut(s)	218, 491
Hpy188I	TCNGA	4 cut(s)	75, 157, 245, 366
Hpy188III	TCNNGA	3 cut(s)	115, 142, 278
HpyAV	CCTTC	3 cut(s)	60, 452, 533
HpyCH4III	ACNGT	2 cut(s)	316, 488
HpyCH4IV	ACGT	1 cut(s)	557
HpyCH4V	TGCA	2 cut(s)	259, 395
HpyF10VI	GCNNNNNNNGC	1 cut(s)	64
HpySE526I	ACGT	1 cut(s)	557
Hsp92II	CATG	5 cut(s)	118, 263, 467, 512, 544
KflI	GGGWCCC	1 cut(s)	518
Kzo9I	GATC	3 cut(s)	208, 245, 280
Lsp1109I	GCAGC	1 cut(s)	42
LweI	GCATC	1 cut(s)	54
MaeII	ACGT	1 cut(s)	557
MaeIII	GTNAC	5 cut(s)	268, 479, 488, 553, 563
MalI	GATC	3 cut(s)	210, 247, 282
MboI	GATC	3 cut(s)	208, 245, 280
MboII	GAAGA	5 cut(s)	168, 171, 188, 232, 416
MflI	RGATCY	2 cut(s)	245, 280
MhlI	GDGCHC	1 cut(s)	105
MluCI	AATT	1 cut(s)	439
MlyI	GAGTC	3 cut(s)	114, 187, 222
MmeI	TCCRAC	3 cut(s)	41, 308, 551
MnlI	CCTC	5 cut(s)	28, 241, 321, 352, 582
MseI	TTAA	2 cut(s)	437, 583
MslI	CAYNNNNRTG	1 cut(s)	468
MspI	CCGG	3 cut(s)	91, 98, 163
MspR9I	CCNGG	3 cut(s)	99, 218, 297
MvaI	CCWGG	2 cut(s)	218, 297
MwoI	GCNNNNNNNGC	1 cut(s)	64
NciI	CCSGG	1 cut(s)	99
NdeI	CATATG	1 cut(s)	430
NdeII	GATC	3 cut(s)	208, 245, 280
NlaIII	CATG	5 cut(s)	118, 263, 467, 512, 544
NlaIV	GGNNCC	3 cut(s)	294, 519, 520
NmuCI	GTSAC	3 cut(s)	479, 553, 563
PagI	TCATGA	1 cut(s)	114
PceI	AGGCCT	1 cut(s)	230
PfeI	GAWTC	1 cut(s)	503
PkrI	GCNGC	2 cut(s)	15, 57
PleI	GAGTC	3 cut(s)	114, 187, 221
PmaCI	CACGTG	1 cut(s)	558
PmlI	CACGTG	1 cut(s)	558
PpsI	GAGTC	3 cut(s)	114, 187, 221
Ppu21I	YACGTR	1 cut(s)	558
PpuMI	RGGWCCY	1 cut(s)	518
Psp5II	RGGWCCY	1 cut(s)	518
Psp6I	CCWGG	2 cut(s)	216, 295
PspCI	CACGTG	1 cut(s)	558
PspFI	CCCAGC	1 cut(s)	475
PspGI	CCWGG	2 cut(s)	216, 295
PspN4I	GGNNCC	3 cut(s)	294, 519, 520
PspPI	GGNCC	2 cut(s)	15, 518
PspPPI	RGGWCCY	1 cut(s)	518
PsuI	RGATCY	2 cut(s)	245, 280
RsaI	GTAC	3 cut(s)	29, 47, 188
RsaNI	GTAC	3 cut(s)	28, 46, 187
RseI	CAYNNNNRTG	1 cut(s)	468
SaqAI	TTAA	2 cut(s)	437, 583
SatI	GCNGC	2 cut(s)	14, 56
Sau3AI	GATC	3 cut(s)	208, 245, 280
Sau96I	GGNCC	2 cut(s)	15, 518
SchI	GAGTC	3 cut(s)	114, 187, 222
ScrFI	CCNGG	3 cut(s)	99, 218, 297
SduI	GDGCHC	1 cut(s)	105
SetI	ASST	7 cut(s)	8, 298, 346, 363, 500, 560, 574
SfaNI	GCATC	1 cut(s)	54
SinI	GGWCC	1 cut(s)	518
SmiMI	CAYNNNNRTG	1 cut(s)	468
Sse9I	AATT	1 cut(s)	439
SseBI	AGGCCT	1 cut(s)	230
SsiI	CCGC	1 cut(s)	13
StuI	AGGCCT	1 cut(s)	230
StyD4I	CCNGG	3 cut(s)	97, 216, 295
TaaI	ACNGT	2 cut(s)	316, 488
TaiI	ACGT	1 cut(s)	560
TaqI	TCGA	3 cut(s)	105, 211, 277
TasI	AATT	1 cut(s)	439
TauI	GCSGC	1 cut(s)	16
TfiI	GAWTC	1 cut(s)	503
Tru1I	TTAA	2 cut(s)	437, 583
Tru9I	TTAA	2 cut(s)	437, 583
TscAI	CASTG	1 cut(s)	38
TseFI	GTSAC	3 cut(s)	479, 553, 563
TseI	GCWGC	1 cut(s)	55
Tsp45I	GTSAC	3 cut(s)	479, 553, 563
TspDTI	ATGAA	3 cut(s)	103, 157, 310
TspRI	CASTG	1 cut(s)	38
VpaK11BI	GGWCC	1 cut(s)	518
XapI	RAATTY	1 cut(s)	439

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.