Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0014666

Physical Location & Seq

Genomic Coordinates Reverse (-)

40881629 .. 40884795

Gene Structure 3167 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G491400.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGAGCTTCTTGAGGCCCTCCGCTCTGCACCAGTGCTTCATTGCGTTCCCTTCGCTGAGGTGGATGCCATGCCAGAGCTGGGAGTTTCTGCGATGGCCGGGGCTTGATGGGCTCTTGAGACTCTTGGTGGTGGTGCTTTTGTGGACTACGTTTTCTGAGATTCGCTTCATTCCTTCCTCTTCTATGTACCCGACTCTTCGTGTTGGTGATCGCGTCGTTGTCGAAAAGGCCTCATATTATATTAGACGTCCTGCTATGCACGATATTGTAACATTCCCGGATCCAACACAGCAAACTGGAGACTCGGAACAGATCGTTTTCATAAAGAGGATTGTTGCGAAAGGGGGAGACTTGGTTGAGGTTCGTAATGGATGGCTCTATGTCAATGGAATTGCGCAGAAGGAAGATTTTATCGCAGAACCACCCACATATGTATCAAATTTAACTTATGTGCCTGAAGGCCATGTATATGTGCTAGGTGACAACCGCAACAATAGCTTTGACTCCCATGTTTGCAGGGGACCCCTTCCCATCAAGAACATCATTGGAAGATATGTAACATGTTGTCATAGACCTCGCAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006508 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008233 GO:0009507 GO:0009526 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009657 GO:0009668 GO:0009987 GO:0010027 GO:0010467 GO:0016020 GO:0016043 GO:0016787 GO:0019538 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0051604 GO:0055035 GO:0061024 GO:0071704 GO:0071840 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko02024 ko03060 map02024 map03060

Pfam Domains

Protein Families

Peptidase_S24 Peptidase_S26

Protein Analysis

195

Amino Acids

22.27

Weight (kDa)

8.87

Isoelectric Point (pI)

63.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014666)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g27640
prunus_persica	Prupe.1G491400_v2.0.a1 Prupe.1G491400_v2.0.a1 Prupe.1G491400_v2.0.a1 Prupe.1G491400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0296471
rosa_laevigata	RLG00000011689
rosa_multiflora	Rmu_sc0006967.1_g000010
rosa_roxburghii	Rroxscaffold_7G00171510 Rroxscaffold_7G00178610
rosa_rugosa	Rorug06G0262600 Rorug06G0262700
rosa_samantha	Rh6AG374000 Rh6BG382600 Rh6CG387400 Rh6DG375200
rosa_wichuraiana	Rw6G032620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	250
Acc16I	TGCGCA	1 cut(s)	396
AccBSI	CCGCTC	1 cut(s)	23
AccII	CGCG	1 cut(s)	213
AciI	CCGC	2 cut(s)	21, 487
AclWI	GGATC	2 cut(s)	275, 288
AcoI	YGGCCR	1 cut(s)	95
AcsI	RAATTY	1 cut(s)	439
AcuI	CTGAAG	1 cut(s)	477
AcyI	GRCGYC	1 cut(s)	247
AfaI	GTAC	1 cut(s)	188
AfiI	CCNNNNNNNGG	1 cut(s)	79
AflIII	ACRYGT	1 cut(s)	560
AluBI	AGCT	3 cut(s)	6, 78, 498
AluI	AGCT	3 cut(s)	6, 78, 498
Alw26I	GTCTC	3 cut(s)	112, 294, 342
AlwI	GGATC	2 cut(s)	275, 288
AoxI	GGCC	4 cut(s)	14, 95, 228, 460
ApoI	RAATTY	1 cut(s)	439
AspLEI	GCGC	1 cut(s)	397
AspS9I	GGNCC	2 cut(s)	15, 521
AsuC2I	CCSGG	2 cut(s)	99, 278
AsuHPI	GGTGA	2 cut(s)	218, 491
AvaII	GGWCC	1 cut(s)	521
BaeI	ACNNNNGTAYC	2 cut(s)	417, 450
BamHI	GGATCC	1 cut(s)	280
BanII	GRGCYC	1 cut(s)	114
BbvCI	CCTCAGC	1 cut(s)	56
BccI	CCATC	4 cut(s)	87, 101, 366, 539
BcnI	CCSGG	2 cut(s)	99, 278
BcoDI	GTCTC	3 cut(s)	112, 294, 342
BfaI	CTAG	1 cut(s)	476
Bme1390I	CCNGG	2 cut(s)	99, 278
Bme18I	GGWCC	1 cut(s)	521
BmgT120I	GGNCC	2 cut(s)	15, 521
BmiI	GGNNCC	3 cut(s)	282, 522, 523
BmrFI	CCNGG	2 cut(s)	99, 278
BmsI	GCATC	1 cut(s)	54
BpmI	CTGGAG	1 cut(s)	318
Bpu10I	CCTNAGC	1 cut(s)	56
BpuEI	CTTGAG	2 cut(s)	31, 136
BpuMI	CCSGG	2 cut(s)	99, 278
BsaHI	GRCGYC	1 cut(s)	247
BsaJI	CCNNGG	1 cut(s)	98
BsaXI	ACNNNNNCTCC	2 cut(s)	339, 369
Bsc4I	CCNNNNNNNGG	1 cut(s)	79
Bse1I	ACTGG	2 cut(s)	31, 301
Bse3DI	GCAATG	1 cut(s)	39
BseDI	CCNNGG	1 cut(s)	98
BseGI	GGATG	2 cut(s)	69, 377
BseLI	CCNNNNNNNGG	1 cut(s)	79
BseMI	GCAATG	1 cut(s)	39
BseMII	CTCAG	2 cut(s)	47, 147
BseNI	ACTGG	2 cut(s)	31, 301
BseYI	CCCAGC	1 cut(s)	78
BsgI	GTGCAG	1 cut(s)	11
Bsh1236I	CGCG	1 cut(s)	213
BshFI	GGCC	4 cut(s)	16, 97, 230, 462
BsiSI	CCGG	2 cut(s)	98, 278
BslFI	GGGAC	1 cut(s)	534
BslI	CCNNNNNNNGG	1 cut(s)	79
BsmAI	GTCTC	3 cut(s)	112, 294, 342
BsmFI	GGGAC	1 cut(s)	534
BsnI	GGCC	4 cut(s)	16, 97, 230, 462
Bsp1286I	GDGCHC	1 cut(s)	114
Bsp143I	GATC	3 cut(s)	208, 280, 312
BspACI	CCGC	2 cut(s)	21, 487
BspANI	GGCC	4 cut(s)	16, 97, 230, 462
BspCNI	CTCAG	2 cut(s)	48, 148
BspFNI	CGCG	1 cut(s)	213
BspLI	GGNNCC	3 cut(s)	282, 522, 523
BspPI	GGATC	2 cut(s)	275, 288
BsrBI	CCGCTC	1 cut(s)	23
BsrDI	GCAATG	1 cut(s)	39
BsrI	ACTGG	2 cut(s)	31, 301
BssECI	CCNNGG	1 cut(s)	98
BssMI	GATC	3 cut(s)	208, 280, 312
BssNI	GRCGYC	1 cut(s)	247
Bst6I	CTCTTC	2 cut(s)	184, 201
BstACI	GRCGYC	1 cut(s)	247
BstDEI	CTNAG	2 cut(s)	56, 156
BstF5I	GGATG	2 cut(s)	69, 377
BstFNI	CGCG	1 cut(s)	213
BstHHI	GCGC	1 cut(s)	397
BstKTI	GATC	3 cut(s)	211, 283, 315
BstMAI	GTCTC	3 cut(s)	112, 294, 342
BstMBI	GATC	3 cut(s)	208, 280, 312
BstMWI	GCNNNNNNNGC	2 cut(s)	109, 495
BstNSI	RCATGY	1 cut(s)	564
BstSCI	CCNGG	2 cut(s)	97, 276
BstUI	CGCG	1 cut(s)	213
BstX2I	RGATCY	1 cut(s)	280
BstYI	RGATCY	1 cut(s)	280
BsuRI	GGCC	4 cut(s)	16, 97, 230, 462
BtgZI	GCGATG	1 cut(s)	106
BtsCI	GGATG	2 cut(s)	69, 377
BtsIMutI	CAGTG	1 cut(s)	38
CfoI	GCGC	1 cut(s)	397
Cfr13I	GGNCC	2 cut(s)	15, 521
CseI	GACGC	1 cut(s)	202
Csp6I	GTAC	1 cut(s)	187
CviAII	CATG	4 cut(s)	69, 464, 509, 561
CviQI	GTAC	1 cut(s)	187
DdeI	CTNAG	2 cut(s)	56, 156
DpnI	GATC	3 cut(s)	210, 282, 314
DpnII	GATC	3 cut(s)	208, 280, 312
EaeI	YGGCCR	1 cut(s)	95
Eam1104I	CTCTTC	2 cut(s)	184, 201
EarI	CTCTTC	2 cut(s)	184, 201
Eco147I	AGGCCT	1 cut(s)	230
Eco24I	GRGCYC	1 cut(s)	114
Eco47I	GGWCC	1 cut(s)	521
Eco57I	CTGAAG	1 cut(s)	477
EcoO109I	RGGNCCY	2 cut(s)	15, 521
EcoT38I	GRGCYC	1 cut(s)	114
FaeI	CATG	4 cut(s)	72, 467, 512, 564
FaqI	GGGAC	1 cut(s)	534
FatI	CATG	4 cut(s)	68, 463, 508, 560
FauNDI	CATATG	1 cut(s)	430
FokI	GGATG	2 cut(s)	76, 384
FriOI	GRGCYC	1 cut(s)	114
FspBI	CTAG	1 cut(s)	476
FspI	TGCGCA	1 cut(s)	396
GlaI	GCGC	1 cut(s)	396
GsaI	CCCAGC	1 cut(s)	82
GsuI	CTGGAG	1 cut(s)	318
HaeIII	GGCC	4 cut(s)	16, 97, 230, 462
HapII	CCGG	2 cut(s)	98, 278
HgaI	GACGC	1 cut(s)	202
HhaI	GCGC	1 cut(s)	397
Hin1I	GRCGYC	1 cut(s)	247
Hin1II	CATG	4 cut(s)	72, 467, 512, 564
Hin6I	GCGC	1 cut(s)	395
HinP1I	GCGC	1 cut(s)	395
HinfI	GANTC	5 cut(s)	120, 160, 193, 302, 503
HpaII	CCGG	2 cut(s)	98, 278
HphI	GGTGA	2 cut(s)	218, 491
Hpy166II	GTNNAC	1 cut(s)	144
Hpy188I	TCNGA	2 cut(s)	157, 307
Hpy188III	TCNNGA	3 cut(s)	10, 115, 535
Hpy8I	GTNNAC	1 cut(s)	144
Hpy99I	CGWCG	1 cut(s)	218
HpyAV	CCTTC	5 cut(s)	60, 183, 394, 452, 536
HpyCH4IV	ACGT	2 cut(s)	149, 247
HpyCH4V	TGCA	3 cut(s)	28, 259, 516
HpyF10VI	GCNNNNNNNGC	2 cut(s)	109, 495
HpyF3I	CTNAG	2 cut(s)	56, 156
HpySE526I	ACGT	2 cut(s)	149, 247
Hsp92I	GRCGYC	1 cut(s)	247
Hsp92II	CATG	4 cut(s)	72, 467, 512, 564
HspAI	GCGC	1 cut(s)	395
KflI	GGGWCCC	1 cut(s)	521
Kzo9I	GATC	3 cut(s)	208, 280, 312
LpnPI	CCDG	9 cut(s)	44, 64, 86, 111, 264, 282, 291, 468, 502
LweI	GCATC	1 cut(s)	54
MaeI	CTAG	1 cut(s)	476
MaeII	ACGT	2 cut(s)	149, 247
MaeIII	GTNAC	3 cut(s)	268, 479, 556
MalI	GATC	3 cut(s)	210, 282, 314
MbiI	CCGCTC	1 cut(s)	23
MboI	GATC	3 cut(s)	208, 280, 312
MboII	GAAGA	4 cut(s)	171, 188, 416, 561
MflI	RGATCY	1 cut(s)	280
MhlI	GDGCHC	1 cut(s)	114
MluCI	AATT	2 cut(s)	390, 439
MlyI	GAGTC	4 cut(s)	114, 187, 296, 497
MmeI	TCCRAC	1 cut(s)	308
MnlI	CCTC	8 cut(s)	6, 28, 51, 187, 241, 321, 352, 585
MseI	TTAA	1 cut(s)	443
MslI	CAYNNNNRTG	1 cut(s)	468
MspI	CCGG	2 cut(s)	98, 278
MspR9I	CCNGG	2 cut(s)	99, 278
MvnI	CGCG	1 cut(s)	213
MwoI	GCNNNNNNNGC	2 cut(s)	109, 495
NciI	CCSGG	2 cut(s)	99, 278
NdeI	CATATG	1 cut(s)	430
NdeII	GATC	3 cut(s)	208, 280, 312
NlaIII	CATG	4 cut(s)	72, 467, 512, 564
NlaIV	GGNNCC	3 cut(s)	282, 522, 523
NmuCI	GTSAC	1 cut(s)	479
NsbI	TGCGCA	1 cut(s)	396
NspI	RCATGY	1 cut(s)	564
PceI	AGGCCT	1 cut(s)	230
PciI	ACATGT	1 cut(s)	560
PfeI	GAWTC	1 cut(s)	160
PfoI	TCCNGGA	1 cut(s)	276
PleI	GAGTC	4 cut(s)	114, 187, 296, 497
PpsI	GAGTC	4 cut(s)	114, 187, 296, 497
PpuMI	RGGWCCY	1 cut(s)	521
PscI	ACATGT	1 cut(s)	560
Psp5II	RGGWCCY	1 cut(s)	521
PspFI	CCCAGC	1 cut(s)	78
PspN4I	GGNNCC	3 cut(s)	282, 522, 523
PspPI	GGNCC	2 cut(s)	15, 521
PspPPI	RGGWCCY	1 cut(s)	521
PsuI	RGATCY	1 cut(s)	280
RsaI	GTAC	1 cut(s)	188
RsaNI	GTAC	1 cut(s)	187
RseI	CAYNNNNRTG	1 cut(s)	468
SaqAI	TTAA	1 cut(s)	443
Sau3AI	GATC	3 cut(s)	208, 280, 312
Sau96I	GGNCC	2 cut(s)	15, 521
SchI	GAGTC	4 cut(s)	114, 187, 296, 497
ScrFI	CCNGG	2 cut(s)	99, 278
SduI	GDGCHC	1 cut(s)	114
SetI	ASST	9 cut(s)	8, 62, 80, 152, 250, 363, 481, 500, 577
SfaNI	GCATC	1 cut(s)	54
SinI	GGWCC	1 cut(s)	521
SmiMI	CAYNNNNRTG	1 cut(s)	468
SmlI	CTYRAG	2 cut(s)	10, 115
SmoI	CTYRAG	2 cut(s)	10, 115
Sse9I	AATT	2 cut(s)	390, 439
SseBI	AGGCCT	1 cut(s)	230
SsiI	CCGC	2 cut(s)	21, 487
SspMI	CTAG	1 cut(s)	476
StuI	AGGCCT	1 cut(s)	230
StyD4I	CCNGG	2 cut(s)	97, 276
TaiI	ACGT	2 cut(s)	152, 250
TaqI	TCGA	1 cut(s)	222
TasI	AATT	2 cut(s)	390, 439
TfiI	GAWTC	1 cut(s)	160
Tru1I	TTAA	1 cut(s)	443
Tru9I	TTAA	1 cut(s)	443
TscAI	CASTG	1 cut(s)	38
TseFI	GTSAC	1 cut(s)	479
Tsp45I	GTSAC	1 cut(s)	479
TspDTI	ATGAA	3 cut(s)	28, 157, 310
TspRI	CASTG	1 cut(s)	38
VpaK11BI	GGWCC	1 cut(s)	521
XapI	RAATTY	1 cut(s)	439
XceI	RCATGY	1 cut(s)	564
XcmI	CCANNNNNNNNNTGG	1 cut(s)	75
XspI	CTAG	1 cut(s)	476
ZraI	GACGTC	1 cut(s)	248

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.