Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0014666

Physical Location & Seq

Genomic Coordinates Reverse (-)

40862611 .. 40862979

Gene Structure 369 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0262600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

ATGGTCCGAGATTTGATTTCGGGGTGTCCGAATCTCGAGGACTTGGAGCTCCGGAGCTGTGTGGGATTGAATAATTTGAATATATGTAGCAGTAGGATTAAGAAGCTAGCGCTTGGGTATGATTATGATAGTGAATCCAAGCAGAGCATTGAGATTGATTGCCCAAATCTTTGTTCGTTGAGTTTTAGTGACCGTAATTTTGCTCAGTTTCTCCTTAAGGAAGCTCCTCAGGGGGCCCTTGAAATGGGTTTGATCGTCAGAGTTAGGGGTCATCATGGGCCGGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006508 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008233 GO:0009507 GO:0009526 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009657 GO:0009668 GO:0009987 GO:0010027 GO:0010467 GO:0016020 GO:0016043 GO:0016787 GO:0019538 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0051604 GO:0055035 GO:0061024 GO:0071704 GO:0071840 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko02024 ko03060 map02024 map03060

Pfam Domains

Protein Families

Peptidase_S24 Peptidase_S26

Protein Analysis

95

Amino Acids

10.48

Weight (kDa)

5.57

Isoelectric Point (pI)

52.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_At1g61320_AtMIF1	PF23622	4 - 76	3.1e-07	At1g61320/AtMIF1, LRR domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0014666)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g27640
prunus_persica	Prupe.1G491400_v2.0.a1 Prupe.1G491400_v2.0.a1 Prupe.1G491400_v2.0.a1 Prupe.1G491400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0296471
rosa_laevigata	RLG00000011689
rosa_multiflora	Rmu_sc0006967.1_g000010
rosa_roxburghii	Rroxscaffold_7G00171510 Rroxscaffold_7G00178610
rosa_rugosa	Rorug06G0262600 Rorug06G0262700
rosa_samantha	Rh6AG374000 Rh6BG382600 Rh6CG387400 Rh6DG375200
rosa_wichuraiana	Rw6G032620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	51
AfeI	AGCGCT	1 cut(s)	111
AfiI	CCNNNNNNNGG	1 cut(s)	244
AflII	CTTAAG	1 cut(s)	215
AgsI	TTSAA	3 cut(s)	70, 79, 242
AjuI	GAANNNNNNNTTGG	2 cut(s)	157, 189
AluBI	AGCT	4 cut(s)	49, 57, 106, 224
AluI	AGCT	4 cut(s)	49, 57, 106, 224
Alw21I	GWGCWC	1 cut(s)	51
Ama87I	CYCGRG	1 cut(s)	35
Aor13HI	TCCGGA	1 cut(s)	51
Aor51HI	AGCGCT	1 cut(s)	111
AoxI	GGCC	2 cut(s)	234, 278
ApaI	GGGCCC	1 cut(s)	238
ArsI	GACNNNNNNTTYG	2 cut(s)	182, 214
AspLEI	GCGC	1 cut(s)	112
AspS9I	GGNCC	4 cut(s)	4, 234, 235, 278
AsuC2I	CCSGG	1 cut(s)	282
AsuNHI	GCTAGC	1 cut(s)	106
AvaI	CYCGRG	1 cut(s)	35
AvaII	GGWCC	1 cut(s)	4
AxyI	CCTNAGG	1 cut(s)	228
BaeGI	GKGCMC	1 cut(s)	238
BanII	GRGCYC	2 cut(s)	51, 238
Bbv12I	GWGCWC	1 cut(s)	51
BcnI	CCSGG	1 cut(s)	282
BfaI	CTAG	2 cut(s)	107, 286
BfoI	RGCGCY	1 cut(s)	113
BfrI	CTTAAG	1 cut(s)	215
Bme1390I	CCNGG	1 cut(s)	282
Bme18I	GGWCC	1 cut(s)	4
BmeT110I	CYCGRG	1 cut(s)	35
BmgT120I	GGNCC	4 cut(s)	4, 234, 235, 278
BmiI	GGNNCC	2 cut(s)	235, 236
BmrFI	CCNGG	1 cut(s)	282
BmtI	GCTAGC	1 cut(s)	110
BpuMI	CCSGG	1 cut(s)	282
BsaWI	WCCGGW	1 cut(s)	51
Bsc4I	CCNNNNNNNGG	1 cut(s)	244
Bse21I	CCTNAGG	1 cut(s)	228
BseAI	TCCGGA	1 cut(s)	51
BseLI	CCNNNNNNNGG	1 cut(s)	244
BseMII	CTCAG	2 cut(s)	218, 242
BseRI	GAGGAG	1 cut(s)	216
BseSI	GKGCMC	1 cut(s)	238
BshFI	GGCC	2 cut(s)	236, 280
BsiHKAI	GWGCWC	1 cut(s)	51
BsiHKCI	CYCGRG	1 cut(s)	35
BsiSI	CCGG	2 cut(s)	52, 281
BslI	CCNNNNNNNGG	1 cut(s)	244
BsnI	GGCC	2 cut(s)	236, 280
BsoBI	CYCGRG	1 cut(s)	35
Bsp120I	GGGCCC	1 cut(s)	234
Bsp1286I	GDGCHC	2 cut(s)	51, 238
Bsp13I	TCCGGA	1 cut(s)	51
Bsp143I	GATC	1 cut(s)	252
BspANI	GGCC	2 cut(s)	236, 280
BspCNI	CTCAG	2 cut(s)	217, 241
BspEI	TCCGGA	1 cut(s)	51
BspLI	GGNNCC	2 cut(s)	235, 236
BspOI	GCTAGC	1 cut(s)	110
BspTI	CTTAAG	1 cut(s)	215
BssMI	GATC	1 cut(s)	252
Bst4CI	ACNGT	1 cut(s)	194
BstAFI	CTTAAG	1 cut(s)	215
BstC8I	GCNNGC	1 cut(s)	108
BstDEI	CTNAG	2 cut(s)	204, 228
BstH2I	RGCGCY	1 cut(s)	113
BstHHI	GCGC	1 cut(s)	112
BstKTI	GATC	1 cut(s)	255
BstMBI	GATC	1 cut(s)	252
BstSCI	CCNGG	1 cut(s)	280
BstSLI	GKGCMC	1 cut(s)	238
Bsu36I	CCTNAGG	1 cut(s)	228
BsuRI	GGCC	2 cut(s)	236, 280
Cac8I	GCNNGC	1 cut(s)	108
CfoI	GCGC	1 cut(s)	112
Cfr13I	GGNCC	4 cut(s)	4, 234, 235, 278
CviAII	CATG	1 cut(s)	275
CviJI	RGCY	7 cut(s)	49, 57, 106, 224, 236, 280, 285
CviKI_1	RGCY	7 cut(s)	49, 57, 106, 224, 236, 280, 285
DdeI	CTNAG	2 cut(s)	204, 228
DpnI	GATC	1 cut(s)	254
DpnII	GATC	1 cut(s)	252
Ecl136II	GAGCTC	1 cut(s)	49
Eco24I	GRGCYC	2 cut(s)	51, 238
Eco47I	GGWCC	1 cut(s)	4
Eco47III	AGCGCT	1 cut(s)	111
Eco53kI	GAGCTC	1 cut(s)	49
Eco81I	CCTNAGG	1 cut(s)	228
Eco88I	CYCGRG	1 cut(s)	35
EcoICRI	GAGCTC	1 cut(s)	49
EcoO109I	RGGNCCY	2 cut(s)	234, 235
EcoT38I	GRGCYC	2 cut(s)	51, 238
FaeI	CATG	1 cut(s)	278
FaiI	YATR	5 cut(s)	83, 85, 120, 126, 276
FatI	CATG	1 cut(s)	274
FriOI	GRGCYC	2 cut(s)	51, 238
FspBI	CTAG	2 cut(s)	107, 286
GlaI	GCGC	1 cut(s)	111
HaeII	RGCGCY	1 cut(s)	113
HaeIII	GGCC	2 cut(s)	236, 280
HapII	CCGG	2 cut(s)	52, 281
HhaI	GCGC	1 cut(s)	112
Hin1II	CATG	1 cut(s)	278
Hin6I	GCGC	1 cut(s)	110
HinP1I	GCGC	1 cut(s)	110
HinfI	GANTC	2 cut(s)	31, 134
HpaII	CCGG	2 cut(s)	52, 281
Hpy188I	TCNGA	3 cut(s)	8, 30, 260
Hpy188III	TCNNGA	2 cut(s)	35, 52
HpyCH4III	ACNGT	1 cut(s)	194
HpyF3I	CTNAG	2 cut(s)	204, 228
Hsp92II	CATG	1 cut(s)	278
HspAI	GCGC	1 cut(s)	110
Kpn2I	TCCGGA	1 cut(s)	51
Kzo9I	GATC	1 cut(s)	252
LmnI	GCTCC	4 cut(s)	46, 54, 54, 229
LpnPI	CCDG	2 cut(s)	65, 215
MaeI	CTAG	2 cut(s)	107, 286
MaeIII	GTNAC	1 cut(s)	188
MalI	GATC	1 cut(s)	254
MboI	GATC	1 cut(s)	252
MhlI	GDGCHC	2 cut(s)	51, 238
MluCI	AATT	2 cut(s)	73, 196
MnlI	CCTC	2 cut(s)	31, 237
MroI	TCCGGA	1 cut(s)	51
MseI	TTAA	2 cut(s)	99, 216
MspCI	CTTAAG	1 cut(s)	215
MspI	CCGG	2 cut(s)	52, 281
MspR9I	CCNGG	1 cut(s)	282
NciI	CCSGG	1 cut(s)	282
NdeII	GATC	1 cut(s)	252
NheI	GCTAGC	1 cut(s)	106
NlaIII	CATG	1 cut(s)	278
NlaIV	GGNNCC	2 cut(s)	235, 236
NmuCI	GTSAC	1 cut(s)	188
PaeR7I	CTCGAG	1 cut(s)	35
PcsI	WCGNNNNNNNCGW	1 cut(s)	26
PfeI	GAWTC	2 cut(s)	31, 134
Psp124BI	GAGCTC	1 cut(s)	51
PspN4I	GGNNCC	2 cut(s)	235, 236
PspOMI	GGGCCC	1 cut(s)	234
PspPI	GGNCC	4 cut(s)	4, 234, 235, 278
SacI	GAGCTC	1 cut(s)	51
SaqAI	TTAA	2 cut(s)	99, 216
Sau3AI	GATC	1 cut(s)	252
Sau96I	GGNCC	4 cut(s)	4, 234, 235, 278
ScrFI	CCNGG	1 cut(s)	282
SduI	GDGCHC	2 cut(s)	51, 238
SetI	ASST	4 cut(s)	51, 59, 108, 226
Sfr274I	CTCGAG	1 cut(s)	35
SinI	GGWCC	1 cut(s)	4
SlaI	CTCGAG	1 cut(s)	35
SmlI	CTYRAG	2 cut(s)	35, 215
SmoI	CTYRAG	2 cut(s)	35, 215
Sse9I	AATT	2 cut(s)	73, 196
SspMI	CTAG	2 cut(s)	107, 286
SstI	GAGCTC	1 cut(s)	51
StyD4I	CCNGG	1 cut(s)	280
TaaI	ACNGT	1 cut(s)	194
TaqI	TCGA	1 cut(s)	36
TasI	AATT	2 cut(s)	73, 196
TfiI	GAWTC	2 cut(s)	31, 134
Tru1I	TTAA	2 cut(s)	99, 216
Tru9I	TTAA	2 cut(s)	99, 216
TseFI	GTSAC	1 cut(s)	188
Tsp45I	GTSAC	1 cut(s)	188
Vha464I	CTTAAG	1 cut(s)	215
VpaK11BI	GGWCC	1 cut(s)	4
XhoI	CTCGAG	1 cut(s)	35
XspI	CTAG	2 cut(s)	107, 286

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.