Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0014666

Physical Location & Seq

Genomic Coordinates Forward (+)

56995063 .. 56999063

Gene Structure 4001 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG375200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGAGCTTCTTGCGGCCCTCTGCTTTGTACCAGTGCCTCCTTGCGTACCCTTCGCTGCGGTGGATGCCGTGTCAGAGTTGGGAGTTTCTCCGGTGGCCGGGGCTCGATGGGTTCATGAGACTCTTGGTCGTGGTGCTTCTCTGGACTATGTGTTCAGAAATCCGCTTCATTCCATCATCTTCCATGTACCCGACTCTTCGTGTTGGTGATCGAGTCCTGGTTGAAAAGGCCTCATATTACTTCAGAACCCCTGCTTTGCATGATATTGTAACGTTTCGATATCCAACACAGGAACCTGGAGACTTAGAACAGATTGTTTTCATAAAGAGGATTGTTGCAAAAGCAGGAGACTTGGTTGAGGTTCGGAATGGATGGCTCTATGTCAATGGAATTGCACAGAAGGAAGATTTTATCGCAGAACCACCCACATATGTATTAGATTTAACTGTGAGTACCATGTCTTTTACTCATTTCTGTTTCCATTTACTGCACCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006508 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008233 GO:0009507 GO:0009526 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009657 GO:0009668 GO:0009987 GO:0010027 GO:0010467 GO:0016020 GO:0016043 GO:0016787 GO:0019538 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0051604 GO:0055035 GO:0061024 GO:0071704 GO:0071840 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko02024 ko03060 map02024 map03060

Pfam Domains

Protein Families

Peptidase_S24 Peptidase_S26

Protein Analysis

165

Amino Acids

19.25

Weight (kDa)

6.89

Isoelectric Point (pI)

52.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_S26	PF10502	38 - 145	2.4e-23	Signal peptidase, peptidase S26

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0014666)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g27640
prunus_persica	Prupe.1G491400_v2.0.a1 Prupe.1G491400_v2.0.a1 Prupe.1G491400_v2.0.a1 Prupe.1G491400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0296471
rosa_laevigata	RLG00000011689
rosa_multiflora	Rmu_sc0006967.1_g000010
rosa_roxburghii	Rroxscaffold_7G00171510 Rroxscaffold_7G00178610
rosa_rugosa	Rorug06G0262600 Rorug06G0262700
rosa_samantha	Rh6AG374000 Rh6BG382600 Rh6CG387400 Rh6DG375200
rosa_wichuraiana	Rw6G032620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	13, 58, 163
AclI	AACGTT	1 cut(s)	272
AcoI	YGGCCR	1 cut(s)	95
AcuI	CTGAAG	1 cut(s)	226
AfaI	GTAC	4 cut(s)	29, 47, 188, 454
AfiI	CCNNNNNNNGG	1 cut(s)	97
AgsI	TTSAA	1 cut(s)	224
AhdI	GACNNNNNGTC	1 cut(s)	125
AjnI	CCWGG	2 cut(s)	216, 295
AloI	GAACNNNNNNTCC	2 cut(s)	136, 168
AluBI	AGCT	1 cut(s)	6
AluI	AGCT	1 cut(s)	6
Alw26I	GTCTC	3 cut(s)	112, 294, 342
AoxI	GGCC	3 cut(s)	14, 95, 228
ApeKI	GCWGC	1 cut(s)	55
AspS9I	GGNCC	1 cut(s)	15
AsuC2I	CCSGG	1 cut(s)	99
AsuHPI	GGTGA	1 cut(s)	218
BanII	GRGCYC	1 cut(s)	105
BbvI	GCAGC	1 cut(s)	42
BccI	CCATC	3 cut(s)	101, 181, 366
BceAI	ACGGC	1 cut(s)	52
BciT130I	CCWGG	2 cut(s)	218, 297
BcnI	CCSGG	1 cut(s)	99
BcoDI	GTCTC	3 cut(s)	112, 294, 342
BisI	GCNGC	2 cut(s)	14, 56
BlsI	GCNGC	2 cut(s)	15, 57
Bme1390I	CCNGG	3 cut(s)	99, 218, 297
BmeRI	GACNNNNNGTC	1 cut(s)	125
BmgT120I	GGNCC	1 cut(s)	15
BmiI	GGNNCC	1 cut(s)	294
BmrFI	CCNGG	3 cut(s)	99, 218, 297
BmsI	GCATC	1 cut(s)	54
BpmI	CTGGAG	1 cut(s)	318
BpuMI	CCSGG	1 cut(s)	99
BsaJI	CCNNGG	1 cut(s)	98
BsaWI	WCCGGW	1 cut(s)	90
BsaXI	ACNNNNNCTCC	2 cut(s)	339, 369
Bsc4I	CCNNNNNNNGG	1 cut(s)	97
Bse1I	ACTGG	1 cut(s)	31
BseBI	CCWGG	2 cut(s)	218, 297
BseDI	CCNNGG	1 cut(s)	98
BseGI	GGATG	2 cut(s)	69, 377
BseLI	CCNNNNNNNGG	1 cut(s)	97
BseNI	ACTGG	1 cut(s)	31
BseXI	GCAGC	1 cut(s)	42
BsgI	GTGCAG	1 cut(s)	473
BshFI	GGCC	3 cut(s)	16, 97, 230
BsiSI	CCGG	2 cut(s)	91, 98
BslI	CCNNNNNNNGG	1 cut(s)	97
BsmAI	GTCTC	3 cut(s)	112, 294, 342
BsnI	GGCC	3 cut(s)	16, 97, 230
Bsp1286I	GDGCHC	1 cut(s)	105
Bsp143I	GATC	1 cut(s)	208
BspACI	CCGC	3 cut(s)	13, 58, 163
BspANI	GGCC	3 cut(s)	16, 97, 230
BspHI	TCATGA	1 cut(s)	114
BspLI	GGNNCC	1 cut(s)	294
BsrI	ACTGG	1 cut(s)	31
BssECI	CCNNGG	1 cut(s)	98
BssMI	GATC	1 cut(s)	208
Bst2UI	CCWGG	2 cut(s)	218, 297
Bst4CI	ACNGT	1 cut(s)	448
Bst6I	CTCTTC	1 cut(s)	201
BstDEI	CTNAG	1 cut(s)	304
BstF5I	GGATG	2 cut(s)	69, 377
BstKTI	GATC	1 cut(s)	211
BstMAI	GTCTC	3 cut(s)	112, 294, 342
BstMBI	GATC	1 cut(s)	208
BstMWI	GCNNNNNNNGC	1 cut(s)	64
BstNI	CCWGG	2 cut(s)	218, 297
BstSCI	CCNGG	3 cut(s)	97, 216, 295
BstV1I	GCAGC	1 cut(s)	42
BsuRI	GGCC	3 cut(s)	16, 97, 230
BtsCI	GGATG	2 cut(s)	69, 377
BtsIMutI	CAGTG	1 cut(s)	38
CciI	TCATGA	1 cut(s)	114
Cfr13I	GGNCC	1 cut(s)	15
Csp6I	GTAC	4 cut(s)	28, 46, 187, 453
CviAII	CATG	4 cut(s)	115, 184, 260, 457
CviJI	RGCY	6 cut(s)	6, 16, 97, 103, 230, 376
CviKI_1	RGCY	6 cut(s)	6, 16, 97, 103, 230, 376
CviQI	GTAC	4 cut(s)	28, 46, 187, 453
DdeI	CTNAG	1 cut(s)	304
DpnI	GATC	1 cut(s)	210
DpnII	GATC	1 cut(s)	208
DriI	GACNNNNNGTC	1 cut(s)	125
EaeI	YGGCCR	1 cut(s)	95
Eam1104I	CTCTTC	1 cut(s)	201
Eam1105I	GACNNNNNGTC	1 cut(s)	125
EarI	CTCTTC	1 cut(s)	201
Eco147I	AGGCCT	1 cut(s)	230
Eco24I	GRGCYC	1 cut(s)	105
Eco32I	GATATC	1 cut(s)	281
Eco57I	CTGAAG	1 cut(s)	226
EcoRII	CCWGG	2 cut(s)	216, 295
EcoRV	GATATC	1 cut(s)	281
EcoT38I	GRGCYC	1 cut(s)	105
FaeI	CATG	4 cut(s)	118, 187, 263, 460
FatI	CATG	4 cut(s)	114, 183, 259, 456
FauNDI	CATATG	1 cut(s)	430
Fnu4HI	GCNGC	2 cut(s)	14, 56
FokI	GGATG	2 cut(s)	76, 384
FriOI	GRGCYC	1 cut(s)	105
Fsp4HI	GCNGC	2 cut(s)	14, 56
GluI	GCNGC	2 cut(s)	14, 56
GsuI	CTGGAG	1 cut(s)	318
HaeIII	GGCC	3 cut(s)	16, 97, 230
HapII	CCGG	2 cut(s)	91, 98
Hin1II	CATG	4 cut(s)	118, 187, 263, 460
HinfI	GANTC	3 cut(s)	120, 193, 213
HpaII	CCGG	2 cut(s)	91, 98
HphI	GGTGA	1 cut(s)	218
Hpy188I	TCNGA	4 cut(s)	75, 157, 245, 366
Hpy188III	TCNNGA	2 cut(s)	115, 142
HpyAV	CCTTC	2 cut(s)	60, 394
HpyCH4III	ACNGT	1 cut(s)	448
HpyCH4IV	ACGT	1 cut(s)	272
HpyCH4V	TGCA	4 cut(s)	259, 338, 395, 490
HpyF10VI	GCNNNNNNNGC	1 cut(s)	64
HpyF3I	CTNAG	1 cut(s)	304
HpySE526I	ACGT	1 cut(s)	272
Hsp92II	CATG	4 cut(s)	118, 187, 263, 460
Kzo9I	GATC	1 cut(s)	208
Lsp1109I	GCAGC	1 cut(s)	42
LweI	GCATC	1 cut(s)	54
MaeII	ACGT	1 cut(s)	272
MaeIII	GTNAC	1 cut(s)	268
MalI	GATC	1 cut(s)	210
MboI	GATC	1 cut(s)	208
MboII	GAAGA	3 cut(s)	171, 188, 416
MhlI	GDGCHC	1 cut(s)	105
MluCI	AATT	1 cut(s)	390
MlyI	GAGTC	3 cut(s)	114, 187, 222
MmeI	TCCRAC	1 cut(s)	308
MnlI	CCTC	5 cut(s)	28, 47, 241, 321, 352
MseI	TTAA	1 cut(s)	443
MspI	CCGG	2 cut(s)	91, 98
MspR9I	CCNGG	3 cut(s)	99, 218, 297
MvaI	CCWGG	2 cut(s)	218, 297
MwoI	GCNNNNNNNGC	1 cut(s)	64
NciI	CCSGG	1 cut(s)	99
NdeI	CATATG	1 cut(s)	430
NdeII	GATC	1 cut(s)	208
NlaIII	CATG	4 cut(s)	118, 187, 263, 460
NlaIV	GGNNCC	1 cut(s)	294
PagI	TCATGA	1 cut(s)	114
PceI	AGGCCT	1 cut(s)	230
PkrI	GCNGC	2 cut(s)	15, 57
PleI	GAGTC	3 cut(s)	114, 187, 221
PpsI	GAGTC	3 cut(s)	114, 187, 221
Psp1406I	AACGTT	1 cut(s)	272
Psp6I	CCWGG	2 cut(s)	216, 295
PspGI	CCWGG	2 cut(s)	216, 295
PspN4I	GGNNCC	1 cut(s)	294
PspPI	GGNCC	1 cut(s)	15
RsaI	GTAC	4 cut(s)	29, 47, 188, 454
RsaNI	GTAC	4 cut(s)	28, 46, 187, 453
SaqAI	TTAA	1 cut(s)	443
SatI	GCNGC	2 cut(s)	14, 56
Sau3AI	GATC	1 cut(s)	208
Sau96I	GGNCC	1 cut(s)	15
SchI	GAGTC	3 cut(s)	114, 187, 222
ScrFI	CCNGG	3 cut(s)	99, 218, 297
SduI	GDGCHC	1 cut(s)	105
SetI	ASST	5 cut(s)	8, 275, 298, 363, 495
SfaNI	GCATC	1 cut(s)	54
Sse9I	AATT	1 cut(s)	390
SseBI	AGGCCT	1 cut(s)	230
SsiI	CCGC	3 cut(s)	13, 58, 163
StuI	AGGCCT	1 cut(s)	230
StyD4I	CCNGG	3 cut(s)	97, 216, 295
TaaI	ACNGT	1 cut(s)	448
TaiI	ACGT	1 cut(s)	275
TaqI	TCGA	3 cut(s)	105, 211, 277
TasI	AATT	1 cut(s)	390
TauI	GCSGC	1 cut(s)	16
Tru1I	TTAA	1 cut(s)	443
Tru9I	TTAA	1 cut(s)	443
TscAI	CASTG	1 cut(s)	38
TseI	GCWGC	1 cut(s)	55
TspDTI	ATGAA	3 cut(s)	103, 157, 310
TspRI	CASTG	1 cut(s)	38

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.