Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0014666

Physical Location & Seq

Genomic Coordinates Forward (+)

40863066 .. 40863362

Gene Structure 297 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0262700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

ATGCGTGAGCCTCAAGACTTCTACACATCCACTTCTGAGCAACGAGAAATGAAAATCATGAAACCAAGTGTCTCCTTCATGGTAGTTATCATCGATGAAGAACTCAAGGTGGGGCTGACGCGCCTTGAGGCGCGTGACGGCGCAGCGGATCCAAGAGTCGACGTGGATGTGGTAGCCTTGGTGGAAGATGAAGGAGAGGCGGAAGGTTCGAATGGGAAAGTCGTGGTGGAGAAAGAGAGCGCAATTGACGAAGTCGGAGAAGAATTGGGCCTAGGCCTGGGTCGGGTTGAGATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006508 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008233 GO:0009507 GO:0009526 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009657 GO:0009668 GO:0009987 GO:0010027 GO:0010467 GO:0016020 GO:0016043 GO:0016787 GO:0019538 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0051604 GO:0055035 GO:0061024 GO:0071704 GO:0071840 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko02024 ko03060 map02024 map03060

Pfam Domains

Protein Families

Peptidase_S24 Peptidase_S26

Protein Analysis

98

Amino Acids

10.74

Weight (kDa)

4.26

Isoelectric Point (pI)

19.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014666)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g27640
prunus_persica	Prupe.1G491400_v2.0.a1 Prupe.1G491400_v2.0.a1 Prupe.1G491400_v2.0.a1 Prupe.1G491400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0296471
rosa_laevigata	RLG00000011689
rosa_multiflora	Rmu_sc0006967.1_g000010
rosa_roxburghii	Rroxscaffold_7G00171510 Rroxscaffold_7G00178610
rosa_rugosa	Rorug06G0262600 Rorug06G0262700
rosa_samantha	Rh6AG374000 Rh6BG382600 Rh6CG387400 Rh6DG375200
rosa_wichuraiana	Rw6G032620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	159
AccII	CGCG	2 cut(s)	121, 133
AciI	CCGC	2 cut(s)	146, 200
AclWI	GGATC	2 cut(s)	143, 156
AfiI	CCNNNNNNNGG	2 cut(s)	277, 283
AjiI	CACGTC	1 cut(s)	163
AjnI	CCWGG	1 cut(s)	276
Alw26I	GTCTC	1 cut(s)	76
AlwI	GGATC	2 cut(s)	143, 156
AoxI	GGCC	2 cut(s)	268, 274
ApeKI	GCWGC	1 cut(s)	143
AspA2I	CCTAGG	1 cut(s)	271
AspLEI	GCGC	4 cut(s)	123, 133, 143, 242
AspS9I	GGNCC	1 cut(s)	268
AsuII	TTCGAA	1 cut(s)	209
AvrII	CCTAGG	1 cut(s)	271
BamHI	GGATCC	1 cut(s)	148
BbvI	GCAGC	1 cut(s)	155
BceAI	ACGGC	1 cut(s)	154
BciT130I	CCWGG	1 cut(s)	278
BcoDI	GTCTC	1 cut(s)	76
BfaI	CTAG	1 cut(s)	272
BglII	AGATCT	1 cut(s)	291
BisI	GCNGC	1 cut(s)	144
BlnI	CCTAGG	1 cut(s)	271
BlsI	GCNGC	1 cut(s)	145
Bme1390I	CCNGG	1 cut(s)	278
BmgBI	CACGTC	1 cut(s)	163
BmgT120I	GGNCC	1 cut(s)	268
BmiI	GGNNCC	1 cut(s)	150
BmrFI	CCNGG	1 cut(s)	278
Bpu14I	TTCGAA	1 cut(s)	209
BpuEI	CTTGAG	2 cut(s)	89, 146
Bsa29I	ATCGAT	1 cut(s)	93
BsaJI	CCNNGG	3 cut(s)	177, 271, 277
Bsc4I	CCNNNNNNNGG	2 cut(s)	277, 283
BseBI	CCWGG	1 cut(s)	278
BseCI	ATCGAT	1 cut(s)	93
BseDI	CCNNGG	3 cut(s)	177, 271, 277
BseGI	GGATG	2 cut(s)	26, 172
BseLI	CCNNNNNNNGG	2 cut(s)	277, 283
BseMII	CTCAG	1 cut(s)	27
BseXI	GCAGC	1 cut(s)	155
Bsh1236I	CGCG	2 cut(s)	121, 133
BshFI	GGCC	2 cut(s)	270, 276
BshVI	ATCGAT	1 cut(s)	93
BslI	CCNNNNNNNGG	2 cut(s)	277, 283
BsmAI	GTCTC	1 cut(s)	76
BsnI	GGCC	2 cut(s)	270, 276
Bsp119I	TTCGAA	1 cut(s)	209
Bsp143I	GATC	2 cut(s)	148, 291
BspACI	CCGC	2 cut(s)	146, 200
BspANI	GGCC	2 cut(s)	270, 276
BspCNI	CTCAG	1 cut(s)	28
BspDI	ATCGAT	1 cut(s)	93
BspFNI	CGCG	2 cut(s)	121, 133
BspHI	TCATGA	1 cut(s)	57
BspLI	GGNNCC	1 cut(s)	150
BspPI	GGATC	2 cut(s)	143, 156
BspT104I	TTCGAA	1 cut(s)	209
BssECI	CCNNGG	3 cut(s)	177, 271, 277
BssMI	GATC	2 cut(s)	148, 291
BssT1I	CCWWGG	2 cut(s)	177, 271
Bst2UI	CCWGG	1 cut(s)	278
BstBI	TTCGAA	1 cut(s)	209
BstDEI	CTNAG	1 cut(s)	36
BstF5I	GGATG	2 cut(s)	26, 172
BstFNI	CGCG	2 cut(s)	121, 133
BstHHI	GCGC	4 cut(s)	123, 133, 143, 242
BstKTI	GATC	2 cut(s)	151, 294
BstMAI	GTCTC	1 cut(s)	76
BstMBI	GATC	2 cut(s)	148, 291
BstNI	CCWGG	1 cut(s)	278
BstSCI	CCNGG	1 cut(s)	276
BstUI	CGCG	2 cut(s)	121, 133
BstV1I	GCAGC	1 cut(s)	155
BstX2I	RGATCY	2 cut(s)	148, 291
BstYI	RGATCY	2 cut(s)	148, 291
Bsu15I	ATCGAT	1 cut(s)	93
BsuRI	GGCC	2 cut(s)	270, 276
BsuTUI	ATCGAT	1 cut(s)	93
BtrI	CACGTC	1 cut(s)	163
BtsCI	GGATG	2 cut(s)	26, 172
CciI	TCATGA	1 cut(s)	57
CfoI	GCGC	4 cut(s)	123, 133, 143, 242
Cfr13I	GGNCC	1 cut(s)	268
ClaI	ATCGAT	1 cut(s)	93
CseI	GACGC	1 cut(s)	127
CviAII	CATG	2 cut(s)	58, 79
CviJI	RGCY	5 cut(s)	10, 115, 176, 270, 276
CviKI_1	RGCY	5 cut(s)	10, 115, 176, 270, 276
DdeI	CTNAG	1 cut(s)	36
DpnI	GATC	2 cut(s)	150, 293
DpnII	GATC	2 cut(s)	148, 291
EciI	GGCGGA	1 cut(s)	215
Eco130I	CCWWGG	2 cut(s)	177, 271
Eco147I	AGGCCT	1 cut(s)	276
EcoRII	CCWGG	1 cut(s)	276
EcoT14I	CCWWGG	2 cut(s)	177, 271
ErhI	CCWWGG	2 cut(s)	177, 271
FaeI	CATG	2 cut(s)	61, 82
FaiI	YATR	2 cut(s)	59, 80
FatI	CATG	2 cut(s)	57, 78
FblI	GTMKAC	1 cut(s)	159
Fnu4HI	GCNGC	1 cut(s)	144
FokI	GGATG	2 cut(s)	13, 179
Fsp4HI	GCNGC	1 cut(s)	144
FspBI	CTAG	1 cut(s)	272
GlaI	GCGC	4 cut(s)	122, 132, 142, 241
GluI	GCNGC	1 cut(s)	144
HaeIII	GGCC	2 cut(s)	270, 276
HgaI	GACGC	1 cut(s)	127
HhaI	GCGC	4 cut(s)	123, 133, 143, 242
Hin1II	CATG	2 cut(s)	61, 82
Hin6I	GCGC	4 cut(s)	121, 131, 141, 240
HinP1I	GCGC	4 cut(s)	121, 131, 141, 240
HincII	GTYRAC	1 cut(s)	160
HindII	GTYRAC	1 cut(s)	160
HinfI	GANTC	1 cut(s)	156
Hpy166II	GTNNAC	1 cut(s)	160
Hpy188I	TCNGA	3 cut(s)	37, 257, 296
Hpy188III	TCNNGA	2 cut(s)	14, 58
Hpy8I	GTNNAC	1 cut(s)	160
Hpy99I	CGWCG	1 cut(s)	164
HpyAV	CCTTC	3 cut(s)	85, 185, 197
HpyCH4IV	ACGT	1 cut(s)	162
HpyF3I	CTNAG	1 cut(s)	36
HpySE526I	ACGT	1 cut(s)	162
Hsp92II	CATG	2 cut(s)	61, 82
HspAI	GCGC	4 cut(s)	121, 131, 141, 240
Kzo9I	GATC	2 cut(s)	148, 291
LpnPI	CCDG	2 cut(s)	263, 290
Lsp1109I	GCAGC	1 cut(s)	155
MaeI	CTAG	1 cut(s)	272
MaeII	ACGT	1 cut(s)	162
MaeIII	GTNAC	1 cut(s)	134
MalI	GATC	2 cut(s)	150, 293
MboI	GATC	2 cut(s)	148, 291
MboII	GAAGA	3 cut(s)	110, 197, 272
MfeI	CAATTG	1 cut(s)	243
MflI	RGATCY	2 cut(s)	148, 291
MluCI	AATT	2 cut(s)	243, 263
MlyI	GAGTC	1 cut(s)	165
MmeI	TCCRAC	1 cut(s)	235
MnlI	CCTC	3 cut(s)	21, 121, 190
MspA1I	CMGCKG	1 cut(s)	146
MspR9I	CCNGG	1 cut(s)	278
MunI	CAATTG	1 cut(s)	243
MvaI	CCWGG	1 cut(s)	278
MvnI	CGCG	2 cut(s)	121, 133
NdeII	GATC	2 cut(s)	148, 291
NlaIII	CATG	2 cut(s)	61, 82
NlaIV	GGNNCC	1 cut(s)	150
NmuCI	GTSAC	1 cut(s)	134
NspV	TTCGAA	1 cut(s)	209
PagI	TCATGA	1 cut(s)	57
PceI	AGGCCT	1 cut(s)	276
PflFI	GACNNNGTC	1 cut(s)	251
PkrI	GCNGC	1 cut(s)	145
PleI	GAGTC	1 cut(s)	164
PpsI	GAGTC	1 cut(s)	164
Psp6I	CCWGG	1 cut(s)	276
PspGI	CCWGG	1 cut(s)	276
PspN4I	GGNNCC	1 cut(s)	150
PspPI	GGNCC	1 cut(s)	268
PsuI	RGATCY	2 cut(s)	148, 291
PsyI	GACNNNGTC	1 cut(s)	251
SalI	GTCGAC	1 cut(s)	158
SatI	GCNGC	1 cut(s)	144
Sau3AI	GATC	2 cut(s)	148, 291
Sau96I	GGNCC	1 cut(s)	268
SchI	GAGTC	1 cut(s)	165
ScrFI	CCNGG	1 cut(s)	278
SetI	ASST	3 cut(s)	111, 165, 208
SfuI	TTCGAA	1 cut(s)	209
SmlI	CTYRAG	3 cut(s)	12, 104, 125
SmoI	CTYRAG	3 cut(s)	12, 104, 125
Sse9I	AATT	2 cut(s)	243, 263
SseBI	AGGCCT	1 cut(s)	276
SsiI	CCGC	2 cut(s)	146, 200
SspMI	CTAG	1 cut(s)	272
StuI	AGGCCT	1 cut(s)	276
StyD4I	CCNGG	1 cut(s)	276
StyI	CCWWGG	2 cut(s)	177, 271
TaiI	ACGT	1 cut(s)	165
TaqI	TCGA	3 cut(s)	93, 159, 209
TasI	AATT	2 cut(s)	243, 263
TseFI	GTSAC	1 cut(s)	134
TseI	GCWGC	1 cut(s)	143
Tsp45I	GTSAC	1 cut(s)	134
TspDTI	ATGAA	5 cut(s)	65, 67, 74, 111, 204
Tth111I	GACNNNGTC	1 cut(s)	251
XmaJI	CCTAGG	1 cut(s)	271
XmiI	GTMKAC	1 cut(s)	159
XspI	CTAG	1 cut(s)	272

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.