FvH4_2g29770

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0016086
Physical Location & Seq
Forward (+)
23027475 .. 23028888
1414 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g29770.t1

Sequence Viewer

Length: 579 bp
ATGTCGTTTAGCTCGTCTCTTTCATCTCCCAGCTCTCTGTTTCTCTTCTCCAAATCCAAACCTGTCAGCTCTCGATTCAGAGCTTCTGCTGAAGTACCTGATTTCCTCTCGGCCGATTGGCTGGAATCGCGGAAGAAGAGACCTTTCGGGCCGAGATTAAATTTTAGCGCAGAAGAAGCTGTTCAGCACCAGCTAGATGCCTTGAAGTACAATGACCAACCTCGCCCTGATTATGGCATTGAGGTCATGTACAGGTTTGCTGGGTTTGATCCTTTTGAGAGGTCAACCTACTTTGGGCCATTCTTTGATTTGGGGCAGTTTGAACGGTTCAGGCGGATATTTCACCATTCGACCTATAGGGTGTTACTGGCTCACAAGGAGAGGGAAATATTGAGCAGTTTGTTTGTAGAGGAGAATCGATATAAGCAGCGGGTTTGGATACGAGGAAGTCGGCCAGAGGAAGAGGAGACATTTCAGTTTACAATGGTTCAGAGGGTTGGTGGCTCATGGGATGGTTATTGGTTGACAGAGAGTGTACTTCATGATGGAGATGCTTTTGCTGGCGGTTTAGCCTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

193

Amino Acids

22.46

Weight (kDa)

6.53

Isoelectric Point (pI)

55.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016086)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G25605
fragaria_vesca FvH4_2g29770
malus_domestica MD08G1141900.v1.1
prunus_persica Prupe.1G471900_v2.0.a1
pyrus_communis pycom08g11980
rosa_chinensis RchiOBHm_Chr6g0298791
rosa_laevigata RLG00000011485
rosa_multiflora Rmu_co8235643.1_g000001 Rmu_ssc0000397.1_g000016
rosa_roxburghii Rroxscaffold_7G00169330
rosa_rugosa Rorug06G0282900
rosa_samantha Rh6AG394500 Rh6BG402300 Rh6DG394900
rosa_wichuraiana Rw6G034510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 130
AciI CCGC 4 cut(s) 130, 334, 430, 564
AclWI GGATC 1 cut(s) 263
AcoI YGGCCR 2 cut(s) 111, 452
AcsI RAATTY 1 cut(s) 160
AcuI CTGAAG 1 cut(s) 111
AfaI GTAC 4 cut(s) 96, 209, 251, 537
AfiI CCNNNNNNNGG 2 cut(s) 233, 294
AgsI TTSAA 2 cut(s) 205, 323
AluBI AGCT 6 cut(s) 12, 33, 69, 83, 179, 193
AluI AGCT 6 cut(s) 12, 33, 69, 83, 179, 193
Alw26I GTCTC 3 cut(s) 21, 133, 461
AlwI GGATC 1 cut(s) 263
AoxI GGCC 4 cut(s) 111, 149, 296, 452
ApeKI GCWGC 1 cut(s) 427
ApoI RAATTY 1 cut(s) 160
Asp700I GAANNNNTTC 1 cut(s) 180
AspLEI GCGC 1 cut(s) 170
AspS9I GGNCC 2 cut(s) 149, 296
AsuHPI GGTGA 1 cut(s) 335
BbvI GCAGC 1 cut(s) 439
BccI CCATC 2 cut(s) 506, 539
BciVI GTATCC 1 cut(s) 432
BcoDI GTCTC 3 cut(s) 21, 133, 461
BfaI CTAG 1 cut(s) 194
BfmI CTRYAG 1 cut(s) 355
BfuI GTATCC 1 cut(s) 432
BisI GCNGC 1 cut(s) 428
BlsI GCNGC 1 cut(s) 429
BmgT120I GGNCC 2 cut(s) 149, 296
BmsI GCATC 2 cut(s) 187, 541
Bsa29I ATCGAT 1 cut(s) 418
BsaI GGTCTC 1 cut(s) 133
Bsc4I CCNNNNNNNGG 2 cut(s) 233, 294
Bse1I ACTGG 1 cut(s) 372
BseCI ATCGAT 1 cut(s) 418
BseGI GGATG 1 cut(s) 517
BseLI CCNNNNNNNGG 2 cut(s) 233, 294
BseNI ACTGG 1 cut(s) 372
BseRI GAGGAG 2 cut(s) 425, 479
BseX3I CGGCCG 1 cut(s) 111
BseXI GCAGC 1 cut(s) 439
BseYI CCCAGC 2 cut(s) 29, 260
Bsh1236I CGCG 1 cut(s) 130
Bsh1285I CGRYCG 1 cut(s) 114
BshFI GGCC 4 cut(s) 113, 151, 298, 454
BshVI ATCGAT 1 cut(s) 418
BsiEI CGRYCG 1 cut(s) 114
BslI CCNNNNNNNGG 2 cut(s) 233, 294
BsmAI GTCTC 3 cut(s) 21, 133, 461
BsmBI CGTCTC 1 cut(s) 21
BsnI GGCC 4 cut(s) 113, 151, 298, 454
Bso31I GGTCTC 1 cut(s) 133
Bsp1407I TGTACA 1 cut(s) 249
Bsp143I GATC 1 cut(s) 268
BspACI CCGC 4 cut(s) 130, 334, 430, 564
BspANI GGCC 4 cut(s) 113, 151, 298, 454
BspDI ATCGAT 1 cut(s) 418
BspFNI CGCG 1 cut(s) 130
BspHI TCATGA 1 cut(s) 541
BspPI GGATC 1 cut(s) 263
BspTNI GGTCTC 1 cut(s) 133
BsrGI TGTACA 1 cut(s) 249
BsrI ACTGG 1 cut(s) 372
BssMI GATC 1 cut(s) 268
Bst4CI ACNGT 1 cut(s) 327
Bst6I CTCTTC 3 cut(s) 50, 131, 456
BstAUI TGTACA 1 cut(s) 249
BstC8I GCNNGC 1 cut(s) 562
BstF5I GGATG 1 cut(s) 517
BstFNI CGCG 1 cut(s) 130
BstHHI GCGC 1 cut(s) 170
BstKTI GATC 1 cut(s) 271
BstMAI GTCTC 3 cut(s) 21, 133, 461
BstMBI GATC 1 cut(s) 268
BstMCI CGRYCG 1 cut(s) 114
BstMWI GCNNNNNNNGC 2 cut(s) 127, 176
BstSFI CTRYAG 1 cut(s) 355
BstUI CGCG 1 cut(s) 130
BstV1I GCAGC 1 cut(s) 439
BstZI CGGCCG 1 cut(s) 111
Bsu15I ATCGAT 1 cut(s) 418
BsuI GTATCC 1 cut(s) 432
BsuRI GGCC 4 cut(s) 113, 151, 298, 454
BsuTUI ATCGAT 1 cut(s) 418
BtsCI GGATG 1 cut(s) 517
Cac8I GCNNGC 1 cut(s) 562
CciI TCATGA 1 cut(s) 541
CfoI GCGC 1 cut(s) 170
Cfr13I GGNCC 2 cut(s) 149, 296
ClaI ATCGAT 1 cut(s) 418
Csp6I GTAC 4 cut(s) 95, 208, 250, 536
CviAII CATG 3 cut(s) 247, 507, 542
CviQI GTAC 4 cut(s) 95, 208, 250, 536
DpnI GATC 1 cut(s) 270
DpnII GATC 1 cut(s) 268
EaeI YGGCCR 2 cut(s) 111, 452
EagI CGGCCG 1 cut(s) 111
Eam1104I CTCTTC 3 cut(s) 50, 131, 456
EarI CTCTTC 3 cut(s) 50, 131, 456
EciI GGCGGA 1 cut(s) 349
EclXI CGGCCG 1 cut(s) 111
Eco31I GGTCTC 1 cut(s) 133
Eco52I CGGCCG 1 cut(s) 111
Eco57I CTGAAG 1 cut(s) 111
Esp3I CGTCTC 1 cut(s) 21
FaeI CATG 3 cut(s) 250, 510, 545
FaiI YATR 6 cut(s) 234, 248, 357, 423, 508, 543
FatI CATG 3 cut(s) 246, 506, 541
FauI CCCGC 1 cut(s) 423
Fnu4HI GCNGC 1 cut(s) 428
FokI GGATG 1 cut(s) 524
Fsp4HI GCNGC 1 cut(s) 428
FspBI CTAG 1 cut(s) 194
GlaI GCGC 1 cut(s) 169
GluI GCNGC 1 cut(s) 428
GsaI CCCAGC 2 cut(s) 33, 264
HaeIII GGCC 4 cut(s) 113, 151, 298, 454
HhaI GCGC 1 cut(s) 170
Hin1II CATG 3 cut(s) 250, 510, 545
Hin6I GCGC 1 cut(s) 168
HinP1I GCGC 1 cut(s) 168
HincII GTYRAC 2 cut(s) 285, 525
HindII GTYRAC 2 cut(s) 285, 525
HinfI GANTC 3 cut(s) 75, 125, 415
HphI GGTGA 1 cut(s) 335
Hpy166II GTNNAC 4 cut(s) 285, 480, 525, 536
Hpy188I TCNGA 2 cut(s) 80, 492
Hpy188III TCNNGA 2 cut(s) 72, 542
Hpy8I GTNNAC 4 cut(s) 285, 480, 525, 536
HpyCH4III ACNGT 1 cut(s) 327
HpyF10VI GCNNNNNNNGC 2 cut(s) 127, 176
Hsp92II CATG 3 cut(s) 250, 510, 545
HspAI GCGC 1 cut(s) 168
Kzo9I GATC 1 cut(s) 268
Lsp1109I GCAGC 1 cut(s) 439
LweI GCATC 2 cut(s) 187, 541
MaeI CTAG 1 cut(s) 194
MaeIII GTNAC 1 cut(s) 363
MalI GATC 1 cut(s) 270
MboI GATC 1 cut(s) 268
MboII GAAGA 5 cut(s) 37, 145, 148, 185, 473
MluCI AATT 1 cut(s) 160
MroXI GAANNNNTTC 1 cut(s) 180
MseI TTAA 1 cut(s) 158
MspA1I CMGCKG 1 cut(s) 430
MvnI CGCG 1 cut(s) 130
MwoI GCNNNNNNNGC 2 cut(s) 127, 176
NdeII GATC 1 cut(s) 268
NlaIII CATG 3 cut(s) 250, 510, 545
NmeAIII GCCGAG 2 cut(s) 89, 177
PagI TCATGA 1 cut(s) 541
PcsI WCGNNNNNNNCGW 1 cut(s) 11
PdmI GAANNNNTTC 1 cut(s) 180
PfeI GAWTC 3 cut(s) 75, 125, 415
PkrI GCNGC 1 cut(s) 429
PspFI CCCAGC 2 cut(s) 29, 260
PspPI GGNCC 2 cut(s) 149, 296
RsaI GTAC 4 cut(s) 96, 209, 251, 537
RsaNI GTAC 4 cut(s) 95, 208, 250, 536
SaqAI TTAA 1 cut(s) 158
SatI GCNGC 1 cut(s) 428
Sau3AI GATC 1 cut(s) 268
Sau96I GGNCC 2 cut(s) 149, 296
SfaNI GCATC 2 cut(s) 187, 541
SfcI CTRYAG 1 cut(s) 355
Sse9I AATT 1 cut(s) 160
SsiI CCGC 4 cut(s) 130, 334, 430, 564
SspI AATATT 1 cut(s) 390
SspMI CTAG 1 cut(s) 194
TaaI ACNGT 1 cut(s) 327
TaqI TCGA 3 cut(s) 73, 350, 418
TasI AATT 1 cut(s) 160
TatI WGTACW 3 cut(s) 207, 249, 535
TfiI GAWTC 3 cut(s) 75, 125, 415
Tru1I TTAA 1 cut(s) 158
Tru9I TTAA 1 cut(s) 158
TseI GCWGC 1 cut(s) 427
TspDTI ATGAA 2 cut(s) 12, 530
XapI RAATTY 1 cut(s) 160
XmnI GAANNNNTTC 1 cut(s) 180
XspI CTAG 1 cut(s) 194
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.