Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0016086

Physical Location & Seq

Genomic Coordinates Forward (+)

10262293 .. 10263974

Gene Structure 1682 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g11980.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGTCGTTTTGCTCCTCCCTGTCATCTCCCCACTCTCTGTTGCTCCTTTCCAAAACCAAATCTCCAAGCTCTCGATTCAGAGCTTGCGCTGCTGACGTTCCTGATTTCCTCTCAGCTGATTGGCTGGAATCCCGGAAGAAGAGGCCCTTTGGCCCCAGATTAAACTTTAGCGCAGAAGAAGCTGTTCAGCATCAGCTGGATGCCCTCAAGTACAACGATCAACCCCGCCCCGATTATGGCATCGAGTTTGCTGGGTTTGATCCTTTTGAGAGGTCCACCTATTTCGGCCCATTCTTTGATTTGGGGCAGTTTGAACGATTTAGGCGAATTTTTCACCATTCAACATATAGAGTGTTGTTATGTCATAAAGAGAGGAAGATGTTGAGCAGTTTATTTGTGGAGGAGAACCTACTCAAGCAGCGGGTTTGGATAAGAGGATGTCGGCCAGAGGAAGAAGAAATATTTCAATTCACAATGGTTCAGAGGGTTGGAGGGTCATGGGATGGTTATTGGCTGACAGAGAGTGTACTTCACGACGGAGATGCTTTTGCCGGTGGTTTGGCTTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

190

Amino Acids

21.96

Weight (kDa)

6.59

Isoelectric Point (pI)

58.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016086)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25605
fragaria_vesca	FvH4_2g29770
malus_domestica	MD08G1141900.v1.1
prunus_persica	Prupe.1G471900_v2.0.a1
pyrus_communis	pycom08g11980
rosa_chinensis	RchiOBHm_Chr6g0298791
rosa_laevigata	RLG00000011485
rosa_multiflora	Rmu_co8235643.1_g000001 Rmu_ssc0000397.1_g000016
rosa_roxburghii	Rroxscaffold_7G00169330
rosa_rugosa	Rorug06G0282900
rosa_samantha	Rh6AG394500 Rh6BG402300 Rh6DG394900
rosa_wichuraiana	Rw6G034510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	226, 421
AclWI	GGATC	1 cut(s)	254
AcoI	YGGCCR	1 cut(s)	443
AcsI	RAATTY	1 cut(s)	327
AfaI	GTAC	2 cut(s)	212, 528
AfiI	CCNNNNNNNGG	1 cut(s)	236
AgsI	TTSAA	3 cut(s)	314, 342, 467
AluBI	AGCT	5 cut(s)	69, 83, 116, 182, 196
AluI	AGCT	5 cut(s)	69, 83, 116, 182, 196
AlwI	GGATC	1 cut(s)	254
AoxI	GGCC	4 cut(s)	143, 151, 286, 443
ApeKI	GCWGC	2 cut(s)	89, 418
ApoI	RAATTY	1 cut(s)	327
Asp700I	GAANNNNTTC	2 cut(s)	183, 462
AspLEI	GCGC	2 cut(s)	89, 173
AspS9I	GGNCC	4 cut(s)	144, 152, 273, 287
AsuC2I	CCSGG	1 cut(s)	133
AsuHPI	GGTGA	1 cut(s)	326
AvaII	GGWCC	1 cut(s)	273
BbvI	GCAGC	2 cut(s)	76, 430
BccI	CCATC	1 cut(s)	497
BcgI	CGANNNNNNTGC	2 cut(s)	524, 558
BcnI	CCSGG	1 cut(s)	133
BisI	GCNGC	2 cut(s)	90, 419
BlsI	GCNGC	2 cut(s)	91, 420
Bme1390I	CCNGG	1 cut(s)	133
Bme18I	GGWCC	1 cut(s)	273
BmgT120I	GGNCC	4 cut(s)	144, 152, 273, 287
BmiI	GGNNCC	1 cut(s)	154
BmrFI	CCNGG	1 cut(s)	133
BmsI	GCATC	4 cut(s)	190, 199, 249, 532
BpuEI	CTTGAG	2 cut(s)	191, 398
BpuMI	CCSGG	1 cut(s)	133
BsaXI	ACNNNNNCTCC	2 cut(s)	46, 76
Bsc4I	CCNNNNNNNGG	1 cut(s)	236
Bse118I	RCCGGY	1 cut(s)	551
BseGI	GGATG	3 cut(s)	205, 443, 508
BseLI	CCNNNNNNNGG	1 cut(s)	236
BseMII	CTCAG	1 cut(s)	126
BseRI	GAGGAG	2 cut(s)	4, 416
BseXI	GCAGC	2 cut(s)	76, 430
BseYI	CCCAGC	1 cut(s)	251
BshFI	GGCC	4 cut(s)	145, 153, 288, 445
BsiSI	CCGG	2 cut(s)	133, 552
BslI	CCNNNNNNNGG	1 cut(s)	236
BsnI	GGCC	4 cut(s)	145, 153, 288, 445
Bsp143I	GATC	2 cut(s)	217, 259
BspACI	CCGC	2 cut(s)	226, 421
BspANI	GGCC	4 cut(s)	145, 153, 288, 445
BspCNI	CTCAG	1 cut(s)	125
BspLI	GGNNCC	1 cut(s)	154
BspPI	GGATC	1 cut(s)	254
BsrFI	RCCGGY	1 cut(s)	551
BssAI	RCCGGY	1 cut(s)	551
BssMI	GATC	2 cut(s)	217, 259
Bst6I	CTCTTC	1 cut(s)	134
BstC8I	GCNNGC	1 cut(s)	85
BstDEI	CTNAG	1 cut(s)	112
BstF5I	GGATG	3 cut(s)	205, 443, 508
BstHHI	GCGC	2 cut(s)	89, 173
BstKTI	GATC	2 cut(s)	220, 262
BstMBI	GATC	2 cut(s)	217, 259
BstMWI	GCNNNNNNNGC	2 cut(s)	89, 179
BstSCI	CCNGG	1 cut(s)	131
BstV1I	GCAGC	2 cut(s)	76, 430
BsuRI	GGCC	4 cut(s)	145, 153, 288, 445
BtsCI	GGATG	3 cut(s)	205, 443, 508
Cac8I	GCNNGC	1 cut(s)	85
CfoI	GCGC	2 cut(s)	89, 173
Cfr10I	RCCGGY	1 cut(s)	551
Cfr13I	GGNCC	4 cut(s)	144, 152, 273, 287
Csp6I	GTAC	2 cut(s)	211, 527
CviAII	CATG	1 cut(s)	498
CviQI	GTAC	2 cut(s)	211, 527
DdeI	CTNAG	1 cut(s)	112
DpnI	GATC	2 cut(s)	219, 261
DpnII	GATC	2 cut(s)	217, 259
EaeI	YGGCCR	1 cut(s)	443
Eam1104I	CTCTTC	1 cut(s)	134
EarI	CTCTTC	1 cut(s)	134
Eco47I	GGWCC	1 cut(s)	273
EcoO109I	RGGNCCY	1 cut(s)	144
FaeI	CATG	1 cut(s)	501
FaiI	YATR	6 cut(s)	237, 346, 348, 361, 366, 499
FalI	AAGNNNNNCTT	2 cut(s)	131, 163
FatI	CATG	1 cut(s)	497
FauI	CCCGC	2 cut(s)	233, 414
Fnu4HI	GCNGC	2 cut(s)	90, 419
FokI	GGATG	3 cut(s)	212, 450, 515
Fsp4HI	GCNGC	2 cut(s)	90, 419
GlaI	GCGC	2 cut(s)	88, 172
GluI	GCNGC	2 cut(s)	90, 419
GsaI	CCCAGC	1 cut(s)	255
HaeIII	GGCC	4 cut(s)	145, 153, 288, 445
HapII	CCGG	2 cut(s)	133, 552
HhaI	GCGC	2 cut(s)	89, 173
Hin1II	CATG	1 cut(s)	501
Hin6I	GCGC	2 cut(s)	87, 171
HinP1I	GCGC	2 cut(s)	87, 171
HinfI	GANTC	2 cut(s)	75, 128
HpaII	CCGG	2 cut(s)	133, 552
HphI	GGTGA	1 cut(s)	326
Hpy166II	GTNNAC	2 cut(s)	276, 527
Hpy188I	TCNGA	2 cut(s)	80, 483
Hpy188III	TCNNGA	3 cut(s)	72, 101, 533
Hpy8I	GTNNAC	2 cut(s)	276, 527
Hpy99I	CGWCG	1 cut(s)	539
HpyCH4IV	ACGT	1 cut(s)	96
HpyF10VI	GCNNNNNNNGC	2 cut(s)	89, 179
HpyF3I	CTNAG	1 cut(s)	112
HpySE526I	ACGT	1 cut(s)	96
Hsp92II	CATG	1 cut(s)	501
HspAI	GCGC	2 cut(s)	87, 171
Kzo9I	GATC	2 cut(s)	217, 259
LmnI	GCTCC	2 cut(s)	17, 48
LpnPI	CCDG	9 cut(s)	32, 110, 114, 146, 169, 182, 237, 459, 565
Lsp1109I	GCAGC	2 cut(s)	76, 430
LweI	GCATC	4 cut(s)	190, 199, 249, 532
MaeII	ACGT	1 cut(s)	96
MalI	GATC	2 cut(s)	219, 261
MboI	GATC	2 cut(s)	217, 259
MboII	GAAGA	6 cut(s)	148, 151, 188, 388, 464, 467
MluCI	AATT	2 cut(s)	327, 467
MmeI	TCCRAC	1 cut(s)	469
MroXI	GAANNNNTTC	2 cut(s)	183, 462
MseI	TTAA	1 cut(s)	161
MspA1I	CMGCKG	3 cut(s)	116, 196, 421
MspI	CCGG	2 cut(s)	133, 552
MspR9I	CCNGG	1 cut(s)	133
MwoI	GCNNNNNNNGC	2 cut(s)	89, 179
NciI	CCSGG	1 cut(s)	133
NdeII	GATC	2 cut(s)	217, 259
NlaIII	CATG	1 cut(s)	501
NlaIV	GGNNCC	1 cut(s)	154
PcsI	WCGNNNNNNNCGW	1 cut(s)	322
PdmI	GAANNNNTTC	2 cut(s)	183, 462
PfeI	GAWTC	2 cut(s)	75, 128
PfoI	TCCNGGA	1 cut(s)	131
PkrI	GCNGC	2 cut(s)	91, 420
PspFI	CCCAGC	1 cut(s)	251
PspN4I	GGNNCC	1 cut(s)	154
PspPI	GGNCC	4 cut(s)	144, 152, 273, 287
PvuII	CAGCTG	2 cut(s)	116, 196
RsaI	GTAC	2 cut(s)	212, 528
RsaNI	GTAC	2 cut(s)	211, 527
SaqAI	TTAA	1 cut(s)	161
SatI	GCNGC	2 cut(s)	90, 419
Sau3AI	GATC	2 cut(s)	217, 259
Sau96I	GGNCC	4 cut(s)	144, 152, 273, 287
ScrFI	CCNGG	1 cut(s)	133
SetI	ASST	9 cut(s)	71, 85, 99, 118, 184, 198, 275, 281, 411
SfaNI	GCATC	4 cut(s)	190, 199, 249, 532
SinI	GGWCC	1 cut(s)	273
SmlI	CTYRAG	2 cut(s)	206, 413
SmoI	CTYRAG	2 cut(s)	206, 413
Sse9I	AATT	2 cut(s)	327, 467
SsiI	CCGC	2 cut(s)	226, 421
SspI	AATATT	1 cut(s)	462
StyD4I	CCNGG	1 cut(s)	131
TaiI	ACGT	1 cut(s)	99
TaqI	TCGA	2 cut(s)	73, 243
TasI	AATT	2 cut(s)	327, 467
TatI	WGTACW	2 cut(s)	210, 526
TfiI	GAWTC	2 cut(s)	75, 128
Tru1I	TTAA	1 cut(s)	161
Tru9I	TTAA	1 cut(s)	161
TseI	GCWGC	2 cut(s)	89, 418
TspGWI	ACGGA	1 cut(s)	552
VpaK11BI	GGWCC	1 cut(s)	273
XapI	RAATTY	1 cut(s)	327
XmnI	GAANNNNTTC	2 cut(s)	183, 462

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.