Rh6AG394500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0016086
Physical Location & Seq
Forward (+)
59262421 .. 59266602
4182 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG394500.1

Sequence Viewer

Length: 504 bp
ATGTCGTTTAGCTCGTCTCTGTCATCTGCCAACTCCTCTCTGTTTCTCTTCTCCAAATCCAAGGCTGTCGCCGCTGCTGATAACAGAACTCTGAGTCCTCCAACCGTCTCCTTCAGCTCTCGGTTCAGAGCTTCTGCTGAGGTTCCTGATTTCCTCTCGGCCAATTGGCTGGAATCTCGCAAGAAGAGACCGTTTGGGCCGAGATTAAATTTTAGCGCAGAAGAAGCTGTTCAGCACCAACTAGATGCGTTGAAGTACAATGACCAACCCCGCCCAGATTATGGCATTGAGGTCATGTACAGGTTTGCCGGGTTTGATCCTTTTGAGAGGTCCACCTACTTTGGGCCATTCTTTGATTTGGGGCAGTTTGAACGGTTCAGGCGGATTTTTCACCATTCGACCTATAGGGTGTTACTAGCTCACAAGGAGAGGGAGATATTGAGCAGTTTGTTTGTAGAGGAGGTATGGGTTATTATTGTTCAGTGTGCCTATTTTGAGTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

167

Amino Acids

19.36

Weight (kDa)

7.89

Isoelectric Point (pI)

46.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016086)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G25605
fragaria_vesca FvH4_2g29770
malus_domestica MD08G1141900.v1.1
prunus_persica Prupe.1G471900_v2.0.a1
pyrus_communis pycom08g11980
rosa_chinensis RchiOBHm_Chr6g0298791
rosa_laevigata RLG00000011485
rosa_multiflora Rmu_co8235643.1_g000001 Rmu_ssc0000397.1_g000016
rosa_roxburghii Rroxscaffold_7G00169330
rosa_rugosa Rorug06G0282900
rosa_samantha Rh6AG394500 Rh6BG402300 Rh6DG394900
rosa_wichuraiana Rw6G034510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 281
AciI CCGC 3 cut(s) 72, 271, 382
AclWI GGATC 1 cut(s) 311
AcoI YGGCCR 1 cut(s) 159
AcsI RAATTY 1 cut(s) 208
AcuI CTGAAG 1 cut(s) 97
AfaI GTAC 2 cut(s) 257, 299
AfiI CCNNNNNNNGG 2 cut(s) 281, 342
AgsI TTSAA 2 cut(s) 253, 371
AloI GAACNNNNNNTCC 2 cut(s) 79, 111
AluBI AGCT 5 cut(s) 12, 117, 131, 227, 419
AluI AGCT 5 cut(s) 12, 117, 131, 227, 419
Alw26I GTCTC 3 cut(s) 21, 112, 181
AlwI GGATC 1 cut(s) 311
AoxI GGCC 3 cut(s) 159, 197, 344
ApeKI GCWGC 1 cut(s) 74
ApoI RAATTY 1 cut(s) 208
Asp700I GAANNNNTTC 1 cut(s) 228
AspLEI GCGC 1 cut(s) 218
AspS9I GGNCC 3 cut(s) 197, 330, 344
AsuC2I CCSGG 1 cut(s) 310
AsuHPI GGTGA 1 cut(s) 383
AvaII GGWCC 1 cut(s) 330
BbvCI CCTCAGC 1 cut(s) 138
BbvI GCAGC 1 cut(s) 61
BcnI CCSGG 1 cut(s) 310
BcoDI GTCTC 3 cut(s) 21, 112, 181
BfaI CTAG 2 cut(s) 242, 416
BfmI CTRYAG 1 cut(s) 403
BisI GCNGC 2 cut(s) 72, 75
BlsI GCNGC 2 cut(s) 73, 76
Bme1390I CCNGG 1 cut(s) 310
Bme18I GGWCC 1 cut(s) 330
BmgT120I GGNCC 3 cut(s) 197, 330, 344
BmiI GGNNCC 1 cut(s) 144
BmrFI CCNGG 1 cut(s) 310
BmsI GCATC 1 cut(s) 235
Bpu10I CCTNAGC 1 cut(s) 138
BpuMI CCSGG 1 cut(s) 310
BsaI GGTCTC 1 cut(s) 181
BsaJI CCNNGG 1 cut(s) 60
Bsc4I CCNNNNNNNGG 2 cut(s) 281, 342
BseDI CCNNGG 1 cut(s) 60
BseLI CCNNNNNNNGG 2 cut(s) 281, 342
BseMII CTCAG 2 cut(s) 83, 129
BseRI GAGGAG 2 cut(s) 25, 473
BseXI GCAGC 1 cut(s) 61
BshFI GGCC 3 cut(s) 161, 199, 346
BsiSI CCGG 1 cut(s) 309
BslI CCNNNNNNNGG 2 cut(s) 281, 342
BsmAI GTCTC 3 cut(s) 21, 112, 181
BsmBI CGTCTC 2 cut(s) 21, 112
BsnI GGCC 3 cut(s) 161, 199, 346
Bso31I GGTCTC 1 cut(s) 181
Bsp1407I TGTACA 1 cut(s) 297
Bsp143I GATC 1 cut(s) 316
BspACI CCGC 3 cut(s) 72, 271, 382
BspANI GGCC 3 cut(s) 161, 199, 346
BspCNI CTCAG 2 cut(s) 84, 130
BspLI GGNNCC 1 cut(s) 144
BspPI GGATC 1 cut(s) 311
BspTNI GGTCTC 1 cut(s) 181
BsrGI TGTACA 1 cut(s) 297
BssECI CCNNGG 1 cut(s) 60
BssMI GATC 1 cut(s) 316
BssT1I CCWWGG 1 cut(s) 60
Bst4CI ACNGT 3 cut(s) 106, 192, 375
Bst6I CTCTTC 2 cut(s) 53, 179
BstAUI TGTACA 1 cut(s) 297
BstDEI CTNAG 2 cut(s) 92, 138
BstHHI GCGC 1 cut(s) 218
BstKTI GATC 1 cut(s) 319
BstMAI GTCTC 3 cut(s) 21, 112, 181
BstMBI GATC 1 cut(s) 316
BstMWI GCNNNNNNNGC 2 cut(s) 71, 224
BstSCI CCNGG 1 cut(s) 308
BstSFI CTRYAG 1 cut(s) 403
BstV1I GCAGC 1 cut(s) 61
BstXI CCANNNNNNTGG 1 cut(s) 169
BsuRI GGCC 3 cut(s) 161, 199, 346
BtsIMutI CAGTG 1 cut(s) 488
CfoI GCGC 1 cut(s) 218
Cfr13I GGNCC 3 cut(s) 197, 330, 344
Csp6I GTAC 2 cut(s) 256, 298
CspCI CAANNNNNGTGG 2 cut(s) 322, 357
CviAII CATG 1 cut(s) 295
CviQI GTAC 2 cut(s) 256, 298
DdeI CTNAG 2 cut(s) 92, 138
DpnI GATC 1 cut(s) 318
DpnII GATC 1 cut(s) 316
EaeI YGGCCR 1 cut(s) 159
Eam1104I CTCTTC 2 cut(s) 53, 179
EarI CTCTTC 2 cut(s) 53, 179
EciI GGCGGA 1 cut(s) 397
Eco130I CCWWGG 1 cut(s) 60
Eco31I GGTCTC 1 cut(s) 181
Eco47I GGWCC 1 cut(s) 330
Eco57I CTGAAG 1 cut(s) 97
EcoT14I CCWWGG 1 cut(s) 60
ErhI CCWWGG 1 cut(s) 60
Esp3I CGTCTC 2 cut(s) 21, 112
FaeI CATG 1 cut(s) 298
FaiI YATR 4 cut(s) 282, 296, 405, 466
FatI CATG 1 cut(s) 294
FauI CCCGC 1 cut(s) 278
Fnu4HI GCNGC 2 cut(s) 72, 75
Fsp4HI GCNGC 2 cut(s) 72, 75
FspBI CTAG 2 cut(s) 242, 416
GlaI GCGC 1 cut(s) 217
GluI GCNGC 2 cut(s) 72, 75
HaeIII GGCC 3 cut(s) 161, 199, 346
HapII CCGG 1 cut(s) 309
HhaI GCGC 1 cut(s) 218
Hin1II CATG 1 cut(s) 298
Hin6I GCGC 1 cut(s) 216
HinP1I GCGC 1 cut(s) 216
HinfI GANTC 2 cut(s) 94, 173
HpaII CCGG 1 cut(s) 309
HphI GGTGA 1 cut(s) 383
Hpy166II GTNNAC 1 cut(s) 333
Hpy188I TCNGA 2 cut(s) 93, 128
Hpy188III TCNNGA 1 cut(s) 146
Hpy8I GTNNAC 1 cut(s) 333
HpyAV CCTTC 1 cut(s) 121
HpyCH4III ACNGT 3 cut(s) 106, 192, 375
HpyF10VI GCNNNNNNNGC 2 cut(s) 71, 224
HpyF3I CTNAG 2 cut(s) 92, 138
Hsp92II CATG 1 cut(s) 298
HspAI GCGC 1 cut(s) 216
Kzo9I GATC 1 cut(s) 316
LpnPI CCDG 6 cut(s) 155, 159, 286, 288, 322, 364
Lsp1109I GCAGC 1 cut(s) 61
LweI GCATC 1 cut(s) 235
MaeI CTAG 2 cut(s) 242, 416
MaeIII GTNAC 1 cut(s) 411
MalI GATC 1 cut(s) 318
MboI GATC 1 cut(s) 316
MboII GAAGA 3 cut(s) 40, 196, 233
MfeI CAATTG 1 cut(s) 163
MluCI AATT 2 cut(s) 163, 208
MlyI GAGTC 1 cut(s) 103
MmeI TCCRAC 1 cut(s) 125
MnlI CCTC 9 cut(s) 46, 108, 133, 164, 283, 321, 423, 451, 454
MroXI GAANNNNTTC 1 cut(s) 228
MseI TTAA 1 cut(s) 206
MspA1I CMGCKG 1 cut(s) 74
MspI CCGG 1 cut(s) 309
MspR9I CCNGG 1 cut(s) 310
MunI CAATTG 1 cut(s) 163
MwoI GCNNNNNNNGC 2 cut(s) 71, 224
NciI CCSGG 1 cut(s) 310
NdeII GATC 1 cut(s) 316
NlaIII CATG 1 cut(s) 298
NlaIV GGNNCC 1 cut(s) 144
NmeAIII GCCGAG 2 cut(s) 137, 225
PcsI WCGNNNNNNNCGW 1 cut(s) 11
PdmI GAANNNNTTC 1 cut(s) 228
PfeI GAWTC 1 cut(s) 173
PflMI CCANNNNNTGG 1 cut(s) 281
PkrI GCNGC 2 cut(s) 73, 76
PleI GAGTC 1 cut(s) 102
PpsI GAGTC 1 cut(s) 102
PspN4I GGNNCC 1 cut(s) 144
PspPI GGNCC 3 cut(s) 197, 330, 344
RsaI GTAC 2 cut(s) 257, 299
RsaNI GTAC 2 cut(s) 256, 298
SaqAI TTAA 1 cut(s) 206
SatI GCNGC 2 cut(s) 72, 75
Sau3AI GATC 1 cut(s) 316
Sau96I GGNCC 3 cut(s) 197, 330, 344
SchI GAGTC 1 cut(s) 103
ScrFI CCNGG 1 cut(s) 310
SfaNI GCATC 1 cut(s) 235
SfcI CTRYAG 1 cut(s) 403
SinI GGWCC 1 cut(s) 330
Sse9I AATT 2 cut(s) 163, 208
SsiI CCGC 3 cut(s) 72, 271, 382
SspMI CTAG 2 cut(s) 242, 416
StyD4I CCNGG 1 cut(s) 308
StyI CCWWGG 1 cut(s) 60
TaaI ACNGT 3 cut(s) 106, 192, 375
TaqI TCGA 1 cut(s) 398
TasI AATT 2 cut(s) 163, 208
TatI WGTACW 2 cut(s) 255, 297
TauI GCSGC 1 cut(s) 74
TfiI GAWTC 1 cut(s) 173
Tru1I TTAA 1 cut(s) 206
Tru9I TTAA 1 cut(s) 206
TscAI CASTG 1 cut(s) 488
TseI GCWGC 1 cut(s) 74
TspRI CASTG 1 cut(s) 488
Van91I CCANNNNNTGG 1 cut(s) 281
VpaK11BI GGWCC 1 cut(s) 330
XapI RAATTY 1 cut(s) 208
XmnI GAANNNNTTC 1 cut(s) 228
XspI CTAG 2 cut(s) 242, 416
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.