Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0016086

Physical Location & Seq

Genomic Coordinates Forward (+)

13964993 .. 13967348

Gene Structure 2356 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1141900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGTCGTTTTGCTCCTCCCTGTCATCTCCGCACTCTCTGTTTCTCCTTTCCAAAACCAAATCTCCAAGCTCTCGATTCAGAGCTTGCGCTGCTGACGTTCCTGATTTCCTCTCAGCCGATTGGCTGGAATCCCGGAAGAAGAGGCCCTTTGGCCCCAGATTAAATTTTAGCGCAGAAGAAGCTGTTCAGCATCAGCTGGATGCCCTCAAGTACAACGATCAACCCCGCCCGGATTATGGCATCGAGGTCATGTACAGGTTTGCTGGGTTTGATCCTTTTGAGAGGTCCACCTATTTCGGGCCATTCTTTGATTTGGGGCAGTTTGAACGATTTAGGCGAATTTTTCACCATTCAACATATAGAGTGTTGTTAGGTCATAAAGAGAGGAAGATGTTGAGCAGTTTATTTGTGGAGGAGAACCTATTCAAGCAGCGGGTTTGGATAAGAGGATGTCGGCCGGAGGAAGAAGAAATATTTCAATTCACAATGGTTCAGAGGGTTGGAGGGTCATGGGATGGTTATTGGCTGACAGAGAGTGTACTTCACGACGGAGATGCTTTTGCCGGTGGTTTGGCTTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

194

Amino Acids

22.54

Weight (kDa)

7.02

Isoelectric Point (pI)

55.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0016086)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25605
fragaria_vesca	FvH4_2g29770
malus_domestica	MD08G1141900.v1.1
prunus_persica	Prupe.1G471900_v2.0.a1
pyrus_communis	pycom08g11980
rosa_chinensis	RchiOBHm_Chr6g0298791
rosa_laevigata	RLG00000011485
rosa_multiflora	Rmu_co8235643.1_g000001 Rmu_ssc0000397.1_g000016
rosa_roxburghii	Rroxscaffold_7G00169330
rosa_rugosa	Rorug06G0282900
rosa_samantha	Rh6AG394500 Rh6BG402300 Rh6DG394900
rosa_wichuraiana	Rw6G034510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	29, 226, 433
AclWI	GGATC	1 cut(s)	266
AcoI	YGGCCR	1 cut(s)	455
AcsI	RAATTY	2 cut(s)	163, 339
AfaI	GTAC	3 cut(s)	212, 254, 540
AfiI	CCNNNNNNNGG	2 cut(s)	236, 297
AgsI	TTSAA	4 cut(s)	326, 354, 427, 479
AluBI	AGCT	4 cut(s)	69, 83, 182, 196
AluI	AGCT	4 cut(s)	69, 83, 182, 196
AlwI	GGATC	1 cut(s)	266
AoxI	GGCC	4 cut(s)	143, 151, 299, 455
ApeKI	GCWGC	2 cut(s)	89, 430
ApoI	RAATTY	2 cut(s)	163, 339
Asp700I	GAANNNNTTC	3 cut(s)	183, 422, 474
AspLEI	GCGC	2 cut(s)	89, 173
AspS9I	GGNCC	4 cut(s)	144, 152, 285, 299
AsuC2I	CCSGG	2 cut(s)	133, 230
AsuHPI	GGTGA	1 cut(s)	338
AvaII	GGWCC	1 cut(s)	285
BbvI	GCAGC	2 cut(s)	76, 442
BccI	CCATC	1 cut(s)	509
BcgI	CGANNNNNNTGC	2 cut(s)	536, 570
BcnI	CCSGG	2 cut(s)	133, 230
BisI	GCNGC	2 cut(s)	90, 431
BlsI	GCNGC	2 cut(s)	91, 432
Bme1390I	CCNGG	2 cut(s)	133, 230
Bme18I	GGWCC	1 cut(s)	285
BmgT120I	GGNCC	4 cut(s)	144, 152, 285, 299
BmiI	GGNNCC	1 cut(s)	154
BmrFI	CCNGG	2 cut(s)	133, 230
BmsI	GCATC	4 cut(s)	190, 199, 249, 544
BpuEI	CTTGAG	1 cut(s)	191
BpuMI	CCSGG	2 cut(s)	133, 230
BsaXI	ACNNNNNCTCC	2 cut(s)	46, 76
Bsc4I	CCNNNNNNNGG	2 cut(s)	236, 297
Bse118I	RCCGGY	1 cut(s)	563
BseGI	GGATG	3 cut(s)	205, 455, 520
BseLI	CCNNNNNNNGG	2 cut(s)	236, 297
BseMII	CTCAG	1 cut(s)	126
BseRI	GAGGAG	2 cut(s)	4, 428
BseX3I	CGGCCG	1 cut(s)	455
BseXI	GCAGC	2 cut(s)	76, 442
BseYI	CCCAGC	1 cut(s)	263
Bsh1285I	CGRYCG	1 cut(s)	458
BshFI	GGCC	4 cut(s)	145, 153, 301, 457
BsiEI	CGRYCG	1 cut(s)	458
BsiSI	CCGG	4 cut(s)	133, 230, 458, 564
BslI	CCNNNNNNNGG	2 cut(s)	236, 297
BsnI	GGCC	4 cut(s)	145, 153, 301, 457
Bsp1407I	TGTACA	1 cut(s)	252
Bsp143I	GATC	2 cut(s)	217, 271
BspACI	CCGC	3 cut(s)	29, 226, 433
BspANI	GGCC	4 cut(s)	145, 153, 301, 457
BspCNI	CTCAG	1 cut(s)	125
BspLI	GGNNCC	1 cut(s)	154
BspPI	GGATC	1 cut(s)	266
BsrFI	RCCGGY	1 cut(s)	563
BsrGI	TGTACA	1 cut(s)	252
BssAI	RCCGGY	1 cut(s)	563
BssMI	GATC	2 cut(s)	217, 271
Bst6I	CTCTTC	1 cut(s)	134
BstAUI	TGTACA	1 cut(s)	252
BstC8I	GCNNGC	1 cut(s)	85
BstDEI	CTNAG	1 cut(s)	112
BstF5I	GGATG	3 cut(s)	205, 455, 520
BstHHI	GCGC	2 cut(s)	89, 173
BstKTI	GATC	2 cut(s)	220, 274
BstMBI	GATC	2 cut(s)	217, 271
BstMCI	CGRYCG	1 cut(s)	458
BstMWI	GCNNNNNNNGC	2 cut(s)	89, 179
BstSCI	CCNGG	2 cut(s)	131, 228
BstV1I	GCAGC	2 cut(s)	76, 442
BstZI	CGGCCG	1 cut(s)	455
BsuRI	GGCC	4 cut(s)	145, 153, 301, 457
BtsCI	GGATG	3 cut(s)	205, 455, 520
Cac8I	GCNNGC	1 cut(s)	85
CfoI	GCGC	2 cut(s)	89, 173
Cfr10I	RCCGGY	1 cut(s)	563
Cfr13I	GGNCC	4 cut(s)	144, 152, 285, 299
Csp6I	GTAC	3 cut(s)	211, 253, 539
CviAII	CATG	2 cut(s)	250, 510
CviQI	GTAC	3 cut(s)	211, 253, 539
DdeI	CTNAG	1 cut(s)	112
DpnI	GATC	2 cut(s)	219, 273
DpnII	GATC	2 cut(s)	217, 271
EaeI	YGGCCR	1 cut(s)	455
EagI	CGGCCG	1 cut(s)	455
Eam1104I	CTCTTC	1 cut(s)	134
EarI	CTCTTC	1 cut(s)	134
EclXI	CGGCCG	1 cut(s)	455
Eco47I	GGWCC	1 cut(s)	285
Eco52I	CGGCCG	1 cut(s)	455
EcoO109I	RGGNCCY	1 cut(s)	144
FaeI	CATG	2 cut(s)	253, 513
FaiI	YATR	6 cut(s)	237, 251, 358, 360, 378, 511
FalI	AAGNNNNNCTT	2 cut(s)	131, 163
FatI	CATG	2 cut(s)	249, 509
FauI	CCCGC	2 cut(s)	233, 426
Fnu4HI	GCNGC	2 cut(s)	90, 431
FokI	GGATG	3 cut(s)	212, 462, 527
Fsp4HI	GCNGC	2 cut(s)	90, 431
GlaI	GCGC	2 cut(s)	88, 172
GluI	GCNGC	2 cut(s)	90, 431
GsaI	CCCAGC	1 cut(s)	267
HaeIII	GGCC	4 cut(s)	145, 153, 301, 457
HapII	CCGG	4 cut(s)	133, 230, 458, 564
HhaI	GCGC	2 cut(s)	89, 173
Hin1II	CATG	2 cut(s)	253, 513
Hin6I	GCGC	2 cut(s)	87, 171
HinP1I	GCGC	2 cut(s)	87, 171
HinfI	GANTC	2 cut(s)	75, 128
HpaII	CCGG	4 cut(s)	133, 230, 458, 564
HphI	GGTGA	1 cut(s)	338
Hpy166II	GTNNAC	2 cut(s)	288, 539
Hpy188I	TCNGA	2 cut(s)	80, 495
Hpy188III	TCNNGA	3 cut(s)	72, 101, 545
Hpy8I	GTNNAC	2 cut(s)	288, 539
Hpy99I	CGWCG	1 cut(s)	551
HpyCH4IV	ACGT	1 cut(s)	96
HpyF10VI	GCNNNNNNNGC	2 cut(s)	89, 179
HpyF3I	CTNAG	1 cut(s)	112
HpySE526I	ACGT	1 cut(s)	96
Hsp92II	CATG	2 cut(s)	253, 513
HspAI	GCGC	2 cut(s)	87, 171
Kzo9I	GATC	2 cut(s)	217, 271
LmnI	GCTCC	1 cut(s)	17
Lsp1109I	GCAGC	2 cut(s)	76, 442
LweI	GCATC	4 cut(s)	190, 199, 249, 544
MaeII	ACGT	1 cut(s)	96
MalI	GATC	2 cut(s)	219, 273
MboI	GATC	2 cut(s)	217, 271
MboII	GAAGA	6 cut(s)	148, 151, 188, 400, 476, 479
MluCI	AATT	3 cut(s)	163, 339, 479
MmeI	TCCRAC	1 cut(s)	481
MroXI	GAANNNNTTC	3 cut(s)	183, 422, 474
MseI	TTAA	1 cut(s)	161
MspA1I	CMGCKG	2 cut(s)	196, 433
MspI	CCGG	4 cut(s)	133, 230, 458, 564
MspR9I	CCNGG	2 cut(s)	133, 230
MwoI	GCNNNNNNNGC	2 cut(s)	89, 179
NciI	CCSGG	2 cut(s)	133, 230
NdeII	GATC	2 cut(s)	217, 271
NlaIII	CATG	2 cut(s)	253, 513
NlaIV	GGNNCC	1 cut(s)	154
PcsI	WCGNNNNNNNCGW	1 cut(s)	334
PdmI	GAANNNNTTC	3 cut(s)	183, 422, 474
PfeI	GAWTC	2 cut(s)	75, 128
PfoI	TCCNGGA	1 cut(s)	131
PkrI	GCNGC	2 cut(s)	91, 432
PspFI	CCCAGC	1 cut(s)	263
PspN4I	GGNNCC	1 cut(s)	154
PspPI	GGNCC	4 cut(s)	144, 152, 285, 299
PvuII	CAGCTG	1 cut(s)	196
RsaI	GTAC	3 cut(s)	212, 254, 540
RsaNI	GTAC	3 cut(s)	211, 253, 539
SaqAI	TTAA	1 cut(s)	161
SatI	GCNGC	2 cut(s)	90, 431
Sau3AI	GATC	2 cut(s)	217, 271
Sau96I	GGNCC	4 cut(s)	144, 152, 285, 299
ScrFI	CCNGG	2 cut(s)	133, 230
SfaNI	GCATC	4 cut(s)	190, 199, 249, 544
SinI	GGWCC	1 cut(s)	285
SmlI	CTYRAG	1 cut(s)	206
SmoI	CTYRAG	1 cut(s)	206
Sse9I	AATT	3 cut(s)	163, 339, 479
SsiI	CCGC	3 cut(s)	29, 226, 433
SspI	AATATT	1 cut(s)	474
StyD4I	CCNGG	2 cut(s)	131, 228
TaiI	ACGT	1 cut(s)	99
TaqI	TCGA	2 cut(s)	73, 243
TasI	AATT	3 cut(s)	163, 339, 479
TatI	WGTACW	3 cut(s)	210, 252, 538
TfiI	GAWTC	2 cut(s)	75, 128
Tru1I	TTAA	1 cut(s)	161
Tru9I	TTAA	1 cut(s)	161
TseI	GCWGC	2 cut(s)	89, 430
TspGWI	ACGGA	1 cut(s)	564
VpaK11BI	GGWCC	1 cut(s)	285
XapI	RAATTY	2 cut(s)	163, 339
XmnI	GAANNNNTTC	3 cut(s)	183, 422, 474

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.