Rmu_ssc0000397.1_g000016

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000397.1
OG0016086
Physical Location & Seq
Forward (+)
67759 .. 69138
1380 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000397.1_g000016.1.cds

Sequence Viewer

Length: 627 bp
atgtcgtttagctcgtctctgtcatctgccaactcctctctgtttctcttctccaaatccaaggctgtcgccgctgctgataacagaactctgagtcctccagccgtctccttcagctctcggttcagagcttctgctgaagttcctgatttcctctcggccaattggctggaatctcgcaagaagagaccgtttgggccgagattaaattttagcgcagaagaagctgttcagcaccaactagatgcgttgaagtacaatgaccaaccccgcccagattatggcattgaggtcatgtacaggtttgccgggtttgatcctttcgagaggtccacctactttgggccattctttgatttggggcagtttgaacggttcaggcggatttttcaccattcgacctatagggtgttactagctcacaaggagagggagatattgagcagtttgtttgtagaggagaatcgatataagcagcggatttggatacgaggaagtcggccagaggaagaagaaacattccagttcacaatggttcagagggttggtggctcttgggatggttattggttgacagagagtgtacttcatgacggagatgctttttctggcggtttagcatactga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

208

Amino Acids

24.05

Weight (kDa)

6.99

Isoelectric Point (pI)

51.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016086)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G25605
fragaria_vesca FvH4_2g29770
malus_domestica MD08G1141900.v1.1
prunus_persica Prupe.1G471900_v2.0.a1
pyrus_communis pycom08g11980
rosa_chinensis RchiOBHm_Chr6g0298791
rosa_laevigata RLG00000011485
rosa_multiflora Rmu_co8235643.1_g000001 Rmu_ssc0000397.1_g000016
rosa_roxburghii Rroxscaffold_7G00169330
rosa_rugosa Rorug06G0282900
rosa_samantha Rh6AG394500 Rh6BG402300 Rh6DG394900
rosa_wichuraiana Rw6G034510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 281
AciI CCGC 5 cut(s) 72, 271, 382, 478, 612
AclWI GGATC 1 cut(s) 311
AcoI YGGCCR 2 cut(s) 159, 500
AcsI RAATTY 1 cut(s) 208
AcuI CTGAAG 2 cut(s) 97, 159
AfaI GTAC 3 cut(s) 257, 299, 585
AfiI CCNNNNNNNGG 2 cut(s) 281, 342
AgsI TTSAA 2 cut(s) 253, 371
AloI GAACNNNNNNTCC 2 cut(s) 79, 111
AluBI AGCT 5 cut(s) 12, 117, 131, 227, 419
AluI AGCT 5 cut(s) 12, 117, 131, 227, 419
Alw26I GTCTC 3 cut(s) 21, 112, 181
AlwI GGATC 1 cut(s) 311
AoxI GGCC 4 cut(s) 159, 197, 344, 500
ApeKI GCWGC 2 cut(s) 74, 475
ApoI RAATTY 1 cut(s) 208
Asp700I GAANNNNTTC 1 cut(s) 228
AspLEI GCGC 1 cut(s) 218
AspS9I GGNCC 3 cut(s) 197, 330, 344
AsuC2I CCSGG 1 cut(s) 310
AsuHPI GGTGA 1 cut(s) 383
AvaII GGWCC 1 cut(s) 330
BbvI GCAGC 2 cut(s) 61, 487
BccI CCATC 1 cut(s) 554
BceAI ACGGC 1 cut(s) 89
BciVI GTATCC 1 cut(s) 480
BcnI CCSGG 1 cut(s) 310
BcoDI GTCTC 3 cut(s) 21, 112, 181
BfaI CTAG 2 cut(s) 242, 416
BfmI CTRYAG 1 cut(s) 403
BfuI GTATCC 1 cut(s) 480
BisI GCNGC 3 cut(s) 72, 75, 476
BlsI GCNGC 3 cut(s) 73, 76, 477
Bme1390I CCNGG 1 cut(s) 310
Bme18I GGWCC 1 cut(s) 330
BmgT120I GGNCC 3 cut(s) 197, 330, 344
BmrFI CCNGG 1 cut(s) 310
BmsI GCATC 2 cut(s) 235, 589
BpmI CTGGAG 1 cut(s) 84
BpuMI CCSGG 1 cut(s) 310
Bsa29I ATCGAT 1 cut(s) 466
BsaI GGTCTC 1 cut(s) 181
BsaJI CCNNGG 1 cut(s) 60
Bsc4I CCNNNNNNNGG 2 cut(s) 281, 342
Bse1I ACTGG 1 cut(s) 523
BseCI ATCGAT 1 cut(s) 466
BseDI CCNNGG 1 cut(s) 60
BseGI GGATG 1 cut(s) 565
BseLI CCNNNNNNNGG 2 cut(s) 281, 342
BseMII CTCAG 1 cut(s) 83
BseNI ACTGG 1 cut(s) 523
BseRI GAGGAG 2 cut(s) 25, 473
BseXI GCAGC 2 cut(s) 61, 487
BshFI GGCC 4 cut(s) 161, 199, 346, 502
BshVI ATCGAT 1 cut(s) 466
BsiSI CCGG 1 cut(s) 309
BslI CCNNNNNNNGG 2 cut(s) 281, 342
BsmAI GTCTC 3 cut(s) 21, 112, 181
BsmBI CGTCTC 2 cut(s) 21, 112
BsnI GGCC 4 cut(s) 161, 199, 346, 502
Bso31I GGTCTC 1 cut(s) 181
Bsp1407I TGTACA 1 cut(s) 297
Bsp143I GATC 1 cut(s) 316
BspACI CCGC 5 cut(s) 72, 271, 382, 478, 612
BspANI GGCC 4 cut(s) 161, 199, 346, 502
BspCNI CTCAG 1 cut(s) 84
BspDI ATCGAT 1 cut(s) 466
BspHI TCATGA 1 cut(s) 589
BspPI GGATC 1 cut(s) 311
BspTNI GGTCTC 1 cut(s) 181
BsrGI TGTACA 1 cut(s) 297
BsrI ACTGG 1 cut(s) 523
BssECI CCNNGG 1 cut(s) 60
BssMI GATC 1 cut(s) 316
BssT1I CCWWGG 1 cut(s) 60
Bst4CI ACNGT 2 cut(s) 192, 375
Bst6I CTCTTC 2 cut(s) 53, 179
BstAUI TGTACA 1 cut(s) 297
BstDEI CTNAG 1 cut(s) 92
BstF5I GGATG 1 cut(s) 565
BstHHI GCGC 1 cut(s) 218
BstKTI GATC 1 cut(s) 319
BstMAI GTCTC 3 cut(s) 21, 112, 181
BstMBI GATC 1 cut(s) 316
BstMWI GCNNNNNNNGC 2 cut(s) 71, 224
BstSCI CCNGG 1 cut(s) 308
BstSFI CTRYAG 1 cut(s) 403
BstV1I GCAGC 2 cut(s) 61, 487
BstXI CCANNNNNNTGG 1 cut(s) 169
Bsu15I ATCGAT 1 cut(s) 466
BsuI GTATCC 1 cut(s) 480
BsuRI GGCC 4 cut(s) 161, 199, 346, 502
BsuTUI ATCGAT 1 cut(s) 466
BtsCI GGATG 1 cut(s) 565
CciI TCATGA 1 cut(s) 589
CfoI GCGC 1 cut(s) 218
Cfr13I GGNCC 3 cut(s) 197, 330, 344
ClaI ATCGAT 1 cut(s) 466
Csp6I GTAC 3 cut(s) 256, 298, 584
CspCI CAANNNNNGTGG 2 cut(s) 322, 357
CviAII CATG 2 cut(s) 295, 590
CviQI GTAC 3 cut(s) 256, 298, 584
DdeI CTNAG 1 cut(s) 92
DpnI GATC 1 cut(s) 318
DpnII GATC 1 cut(s) 316
EaeI YGGCCR 2 cut(s) 159, 500
Eam1104I CTCTTC 2 cut(s) 53, 179
EarI CTCTTC 2 cut(s) 53, 179
EciI GGCGGA 1 cut(s) 397
Eco130I CCWWGG 1 cut(s) 60
Eco31I GGTCTC 1 cut(s) 181
Eco47I GGWCC 1 cut(s) 330
Eco57I CTGAAG 2 cut(s) 97, 159
EcoT14I CCWWGG 1 cut(s) 60
ErhI CCWWGG 1 cut(s) 60
Esp3I CGTCTC 2 cut(s) 21, 112
FaeI CATG 2 cut(s) 298, 593
FaiI YATR 6 cut(s) 282, 296, 405, 471, 591, 622
FatI CATG 2 cut(s) 294, 589
FauI CCCGC 1 cut(s) 278
Fnu4HI GCNGC 3 cut(s) 72, 75, 476
FokI GGATG 1 cut(s) 572
Fsp4HI GCNGC 3 cut(s) 72, 75, 476
FspBI CTAG 2 cut(s) 242, 416
GlaI GCGC 1 cut(s) 217
GluI GCNGC 3 cut(s) 72, 75, 476
GsuI CTGGAG 1 cut(s) 84
HaeIII GGCC 4 cut(s) 161, 199, 346, 502
HapII CCGG 1 cut(s) 309
HhaI GCGC 1 cut(s) 218
Hin1II CATG 2 cut(s) 298, 593
Hin6I GCGC 1 cut(s) 216
HinP1I GCGC 1 cut(s) 216
HincII GTYRAC 1 cut(s) 573
HindII GTYRAC 1 cut(s) 573
HinfI GANTC 3 cut(s) 94, 173, 463
HpaII CCGG 1 cut(s) 309
HphI GGTGA 1 cut(s) 383
Hpy166II GTNNAC 4 cut(s) 333, 528, 573, 584
Hpy188I TCNGA 3 cut(s) 93, 128, 540
Hpy188III TCNNGA 3 cut(s) 146, 325, 590
Hpy8I GTNNAC 4 cut(s) 333, 528, 573, 584
HpyAV CCTTC 1 cut(s) 121
HpyCH4III ACNGT 2 cut(s) 192, 375
HpyF10VI GCNNNNNNNGC 2 cut(s) 71, 224
HpyF3I CTNAG 1 cut(s) 92
Hsp92II CATG 2 cut(s) 298, 593
HspAI GCGC 1 cut(s) 216
Kzo9I GATC 1 cut(s) 316
Lsp1109I GCAGC 2 cut(s) 61, 487
LweI GCATC 2 cut(s) 235, 589
MaeI CTAG 2 cut(s) 242, 416
MaeIII GTNAC 1 cut(s) 411
MalI GATC 1 cut(s) 318
MboI GATC 1 cut(s) 316
MboII GAAGA 5 cut(s) 40, 196, 233, 521, 524
MfeI CAATTG 1 cut(s) 163
MluCI AATT 2 cut(s) 163, 208
MlyI GAGTC 1 cut(s) 103
MroXI GAANNNNTTC 1 cut(s) 228
MseI TTAA 1 cut(s) 206
MspA1I CMGCKG 2 cut(s) 74, 478
MspI CCGG 1 cut(s) 309
MspR9I CCNGG 1 cut(s) 310
MunI CAATTG 1 cut(s) 163
MwoI GCNNNNNNNGC 2 cut(s) 71, 224
NciI CCSGG 1 cut(s) 310
NdeII GATC 1 cut(s) 316
NlaIII CATG 2 cut(s) 298, 593
NmeAIII GCCGAG 2 cut(s) 137, 225
PagI TCATGA 1 cut(s) 589
PcsI WCGNNNNNNNCGW 1 cut(s) 11
PdmI GAANNNNTTC 1 cut(s) 228
PfeI GAWTC 2 cut(s) 173, 463
PflMI CCANNNNNTGG 1 cut(s) 281
PkrI GCNGC 3 cut(s) 73, 76, 477
PleI GAGTC 1 cut(s) 102
PpsI GAGTC 1 cut(s) 102
PspPI GGNCC 3 cut(s) 197, 330, 344
RsaI GTAC 3 cut(s) 257, 299, 585
RsaNI GTAC 3 cut(s) 256, 298, 584
SaqAI TTAA 1 cut(s) 206
SatI GCNGC 3 cut(s) 72, 75, 476
Sau3AI GATC 1 cut(s) 316
Sau96I GGNCC 3 cut(s) 197, 330, 344
SchI GAGTC 1 cut(s) 103
ScrFI CCNGG 1 cut(s) 310
SfaNI GCATC 2 cut(s) 235, 589
SfcI CTRYAG 1 cut(s) 403
SinI GGWCC 1 cut(s) 330
Sse9I AATT 2 cut(s) 163, 208
SsiI CCGC 5 cut(s) 72, 271, 382, 478, 612
SspMI CTAG 2 cut(s) 242, 416
StyD4I CCNGG 1 cut(s) 308
StyI CCWWGG 1 cut(s) 60
TaaI ACNGT 2 cut(s) 192, 375
TaqI TCGA 3 cut(s) 324, 398, 466
TasI AATT 2 cut(s) 163, 208
TatI WGTACW 3 cut(s) 255, 297, 583
TauI GCSGC 1 cut(s) 74
TfiI GAWTC 2 cut(s) 173, 463
Tru1I TTAA 1 cut(s) 206
Tru9I TTAA 1 cut(s) 206
TseI GCWGC 2 cut(s) 74, 475
TspDTI ATGAA 1 cut(s) 578
TspGWI ACGGA 1 cut(s) 609
Van91I CCANNNNNTGG 1 cut(s) 281
VpaK11BI GGWCC 1 cut(s) 330
XapI RAATTY 1 cut(s) 208
XmnI GAANNNNTTC 1 cut(s) 228
XspI CTAG 2 cut(s) 242, 416
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.