FvH4_2g32040

Polyketide cyclase / dehydrase and lipid transport

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0015132
Physical Location & Seq
Forward (+)
24403504 .. 24404647
1144 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g32040.t1

Sequence Viewer

Length: 585 bp
ATGTTTCCGATGGAGTCGAGCCAGAGGGAACCTCCTCCACAGGGGCTAACCTCCGAGGAGCTTTCCGATCTTGAGCCCCTCATTTGCACCTACCACAAATTCGAACCCTCCCCCAACACATGCACGTCCCTTATCACGCAACGAATCGAAGCTCCGACGGGGCTCGTCTGGCCCTTAGTTCGGAGCTTCGACAACCCTCAAAGGTACAAGCACTTCATCAAGAGCTGCAACATGAGCGGCGACGGTGGCGTCGGCAGCATAAGGGAGGTAACCGTCGTCTCGGGCCTCCCGGCGTCCACGAGCACCGAGAGGCTAGAGATTCTGGATGACGAGAAGCACGTTCTGAGCTTTAGGGTTGTCGGAGGCGAGCACAGGCTCAACAACTACAAGTCGGTTACTTCGGTGAACGAGTTCGAGAAAGACGGCAAGGTTTACTCGGTGGTTTTGGAGTCGTATTTGGTTGATATCCCGGAAGGGAATACCGGAGAGGATACCAAGATGTTTGTGGACACTGTGATCAAGTTGAACCTGCAGAAGCTTGCTGTGGTGGCCATGGCTAATCTGCATGGGGGTGGACATGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001101 GO:0003674 GO:0004857 GO:0004864 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008289 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009791 GO:0009845 GO:0009892 GO:0009987 GO:0010033 GO:0010035 GO:0010427 GO:0010563 GO:0010605 GO:0010921 GO:0010923 GO:0019208 GO:0019212 GO:0019220 GO:0019222 GO:0019840 GO:0019888 GO:0023052 GO:0030234 GO:0031323 GO:0031324 GO:0031399 GO:0031400 GO:0031406 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0032515 GO:0032870 GO:0033293 GO:0033993 GO:0035303 GO:0035304 GO:0035305 GO:0035308 GO:0036094 GO:0038023 GO:0042221 GO:0042562 GO:0042802 GO:0042803 GO:0043086 GO:0043167 GO:0043168 GO:0043177 GO:0043178 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043666 GO:0044092 GO:0044424 GO:0044444 GO:0044464 GO:0045936 GO:0046983 GO:0048519 GO:0048523 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051174 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0051716 GO:0060089 GO:0060255 GO:0065007 GO:0065009 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0080090 GO:0090351 GO:0097305 GO:0097306 GO:0098772 GO:1901700 GO:1901701 GO:1905183
KEGG Pathways
Metabolic & Signaling
ko04016 ko04075 map04016 map04075
Pfam Domains
Protein Families
Polyketide_cyc2

Protein Analysis

195

Amino Acids

21.48

Weight (kDa)

5.17

Isoelectric Point (pI)

42.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Polyketide_cyc2 PF10604 46 - 181 1.1e-11 Polyketide cyclase / dehydrase and lipid transport
Bet_v_1 PF00407 69 - 139 8.2e-06 Pathogenesis-related protein Bet v 1 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015132)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G26040
fragaria_vesca FvH4_2g32040
malus_domestica MD08G1043500.v1.1 MD15G1060800.v1.1
prunus_persica Prupe.1G413500_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0310701
rosa_laevigata RLG00000010464
rosa_multiflora Rmu_co8327855.1_g000001 Rmu_sc0001638.1_g000005
rosa_roxburghii Rroxscaffold_7G00158340
rosa_rugosa Rorug06G0382500
rosa_samantha Rh6AG496400 Rh6BG506200 Rh6CG511800 Rh6DG497600
rosa_wichuraiana Rw6G043170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 248
Acc36I ACCTGC 1 cut(s) 537
AccBSI CCGCTC 1 cut(s) 237
AciI CCGC 1 cut(s) 237
AcoI YGGCCR 1 cut(s) 549
AcsI RAATTY 1 cut(s) 98
AcyI GRCGYC 2 cut(s) 249, 293
AfaI GTAC 1 cut(s) 206
AfiI CCNNNNNNNGG 2 cut(s) 41, 180
AgsI TTSAA 1 cut(s) 526
AjiI CACGTC 1 cut(s) 126
AluBI AGCT 6 cut(s) 61, 152, 186, 225, 348, 538
AluI AGCT 6 cut(s) 61, 152, 186, 225, 348, 538
Alw21I GWGCWC 2 cut(s) 305, 372
Alw26I GTCTC 1 cut(s) 283
Ama87I CYCGRG 1 cut(s) 280
AoxI GGCC 3 cut(s) 170, 283, 549
ApeKI GCWGC 2 cut(s) 225, 255
ApoI RAATTY 1 cut(s) 98
Asp700I GAANNNNTTC 1 cut(s) 410
AspS9I GGNCC 2 cut(s) 171, 283
AsuC2I CCSGG 2 cut(s) 290, 470
AsuHPI GGTGA 1 cut(s) 415
AsuII TTCGAA 1 cut(s) 102
AvaI CYCGRG 1 cut(s) 280
BalI TGGCCA 1 cut(s) 551
BanII GRGCYC 2 cut(s) 78, 165
BarI GAAGNNNNNNTAC 2 cut(s) 197, 229
BauI CACGAG 1 cut(s) 298
Bbv12I GWGCWC 2 cut(s) 305, 372
BbvI GCAGC 2 cut(s) 212, 267
BccI CCATC 1 cut(s) 4
BceAI ACGGC 1 cut(s) 439
BciVI GTATCC 1 cut(s) 484
BclI TGATCA 1 cut(s) 516
BcnI CCSGG 2 cut(s) 290, 470
BcoDI GTCTC 1 cut(s) 283
BfaI CTAG 1 cut(s) 314
BfmI CTRYAG 1 cut(s) 530
BfuAI ACCTGC 1 cut(s) 537
BfuI GTATCC 1 cut(s) 484
BisI GCNGC 3 cut(s) 226, 238, 256
BlsI GCNGC 3 cut(s) 227, 239, 257
Bme1390I CCNGG 2 cut(s) 290, 470
BmeT110I CYCGRG 1 cut(s) 280
BmgBI CACGTC 1 cut(s) 126
BmgT120I GGNCC 2 cut(s) 171, 283
BmiI GGNNCC 1 cut(s) 30
BmrFI CCNGG 2 cut(s) 290, 470
BplI GAGNNNNNCTC 2 cut(s) 16, 48
Bpu14I TTCGAA 1 cut(s) 102
BpuEI CTTGAG 1 cut(s) 92
BpuMI CCSGG 2 cut(s) 290, 470
BsaHI GRCGYC 2 cut(s) 249, 293
BsaJI CCNNGG 2 cut(s) 54, 552
BsaWI WCCGGW 1 cut(s) 482
Bsc4I CCNNNNNNNGG 2 cut(s) 41, 180
BseDI CCNNGG 2 cut(s) 54, 552
BseGI GGATG 1 cut(s) 331
BseLI CCNNNNNNNGG 2 cut(s) 41, 180
BseMII CTCAG 1 cut(s) 335
BseRI GAGGAG 2 cut(s) 24, 71
BseXI GCAGC 2 cut(s) 212, 267
BshFI GGCC 3 cut(s) 172, 285, 551
BsiHKAI GWGCWC 2 cut(s) 305, 372
BsiHKCI CYCGRG 1 cut(s) 280
BsiSI CCGG 3 cut(s) 290, 470, 483
BslFI GGGAC 1 cut(s) 112
BslI CCNNNNNNNGG 2 cut(s) 41, 180
BsmAI GTCTC 1 cut(s) 283
BsmBI CGTCTC 1 cut(s) 283
BsmFI GGGAC 1 cut(s) 112
BsnI GGCC 3 cut(s) 172, 285, 551
BsoBI CYCGRG 1 cut(s) 280
Bsp119I TTCGAA 1 cut(s) 102
Bsp1286I GDGCHC 4 cut(s) 78, 165, 305, 372
Bsp143I GATC 2 cut(s) 67, 516
Bsp19I CCATGG 1 cut(s) 552
BspACI CCGC 1 cut(s) 237
BspANI GGCC 3 cut(s) 172, 285, 551
BspCNI CTCAG 1 cut(s) 336
BspLI GGNNCC 1 cut(s) 30
BspMAI CTGCAG 1 cut(s) 534
BspMI ACCTGC 1 cut(s) 537
BspT104I TTCGAA 1 cut(s) 102
BsrBI CCGCTC 1 cut(s) 237
BssECI CCNNGG 2 cut(s) 54, 552
BssMI GATC 2 cut(s) 67, 516
BssNI GRCGYC 2 cut(s) 249, 293
BssSI CACGAG 1 cut(s) 298
BssT1I CCWWGG 1 cut(s) 552
Bst2BI CACGAG 1 cut(s) 298
Bst4CI ACNGT 3 cut(s) 245, 274, 514
BstACI GRCGYC 2 cut(s) 249, 293
BstBI TTCGAA 1 cut(s) 102
BstC8I GCNNGC 2 cut(s) 368, 540
BstDEI CTNAG 2 cut(s) 175, 344
BstDSI CCRYGG 1 cut(s) 552
BstEII GGTNACC 1 cut(s) 268
BstF5I GGATG 1 cut(s) 331
BstKTI GATC 2 cut(s) 70, 519
BstMAI GTCTC 1 cut(s) 283
BstMBI GATC 2 cut(s) 67, 516
BstMWI GCNNNNNNNGC 5 cut(s) 169, 234, 246, 255, 548
BstNSI RCATGY 1 cut(s) 123
BstPI GGTNACC 1 cut(s) 268
BstSCI CCNGG 2 cut(s) 288, 468
BstSFI CTRYAG 1 cut(s) 530
BstV1I GCAGC 2 cut(s) 212, 267
BsuI GTATCC 1 cut(s) 484
BsuRI GGCC 3 cut(s) 172, 285, 551
BtgI CCRYGG 1 cut(s) 552
BtrI CACGTC 1 cut(s) 126
BtsCI GGATG 1 cut(s) 331
BtsIMutI CAGTG 1 cut(s) 510
BveI ACCTGC 1 cut(s) 537
Cac8I GCNNGC 2 cut(s) 368, 540
Cfr13I GGNCC 2 cut(s) 171, 283
CseI GACGC 2 cut(s) 238, 282
Csp6I GTAC 1 cut(s) 205
CviAII CATG 5 cut(s) 120, 232, 553, 566, 578
CviQI GTAC 1 cut(s) 205
DdeI CTNAG 2 cut(s) 175, 344
DpnI GATC 2 cut(s) 69, 518
DpnII GATC 2 cut(s) 67, 516
DrdI GACNNNNNNGTC 1 cut(s) 248
DseDI GACNNNNNNGTC 1 cut(s) 248
EaeI YGGCCR 1 cut(s) 549
Eco130I CCWWGG 1 cut(s) 552
Eco24I GRGCYC 2 cut(s) 78, 165
Eco32I GATATC 1 cut(s) 466
Eco88I CYCGRG 1 cut(s) 280
Eco91I GGTNACC 1 cut(s) 268
EcoO65I GGTNACC 1 cut(s) 268
EcoRV GATATC 1 cut(s) 466
EcoT14I CCWWGG 1 cut(s) 552
EcoT38I GRGCYC 2 cut(s) 78, 165
ErhI CCWWGG 1 cut(s) 552
Esp3I CGTCTC 1 cut(s) 283
FaeI CATG 5 cut(s) 123, 235, 556, 569, 581
FaiI YATR 6 cut(s) 121, 233, 260, 554, 567, 579
FaqI GGGAC 1 cut(s) 112
FatI CATG 5 cut(s) 119, 231, 552, 565, 577
FbaI TGATCA 1 cut(s) 516
Fnu4HI GCNGC 3 cut(s) 226, 238, 256
FokI GGATG 1 cut(s) 338
FriOI GRGCYC 2 cut(s) 78, 165
Fsp4HI GCNGC 3 cut(s) 226, 238, 256
FspBI CTAG 1 cut(s) 314
GluI GCNGC 3 cut(s) 226, 238, 256
HaeIII GGCC 3 cut(s) 172, 285, 551
HapII CCGG 3 cut(s) 290, 470, 483
HgaI GACGC 2 cut(s) 238, 282
Hin1I GRCGYC 2 cut(s) 249, 293
Hin1II CATG 5 cut(s) 123, 235, 556, 569, 581
HindIII AAGCTT 1 cut(s) 536
HinfI GANTC 4 cut(s) 14, 144, 319, 449
HpaII CCGG 3 cut(s) 290, 470, 483
HphI GGTGA 1 cut(s) 415
Hpy166II GTNNAC 5 cut(s) 297, 406, 433, 508, 575
Hpy188I TCNGA 7 cut(s) 9, 55, 67, 156, 183, 345, 362
Hpy188III TCNNGA 4 cut(s) 71, 220, 323, 415
Hpy8I GTNNAC 5 cut(s) 297, 406, 433, 508, 575
Hpy99I CGWCG 4 cut(s) 160, 245, 254, 278
HpyAV CCTTC 1 cut(s) 467
HpyCH4III ACNGT 3 cut(s) 245, 274, 514
HpyCH4IV ACGT 2 cut(s) 125, 339
HpyCH4V TGCA 5 cut(s) 87, 123, 228, 532, 565
HpyF10VI GCNNNNNNNGC 5 cut(s) 169, 234, 246, 255, 548
HpyF3I CTNAG 2 cut(s) 175, 344
HpySE526I ACGT 2 cut(s) 125, 339
Hsp92I GRCGYC 2 cut(s) 249, 293
Hsp92II CATG 5 cut(s) 123, 235, 556, 569, 581
Ksp22I TGATCA 1 cut(s) 516
Kzo9I GATC 2 cut(s) 67, 516
LmnI GCTCC 3 cut(s) 58, 157, 183
LpnPI CCDG 9 cut(s) 26, 35, 154, 303, 308, 358, 483, 496, 542
Lsp1109I GCAGC 2 cut(s) 212, 267
MaeI CTAG 1 cut(s) 314
MaeII ACGT 2 cut(s) 125, 339
MaeIII GTNAC 2 cut(s) 268, 394
MalI GATC 2 cut(s) 69, 518
MbiI CCGCTC 1 cut(s) 237
MboI GATC 2 cut(s) 67, 516
MhlI GDGCHC 4 cut(s) 78, 165, 305, 372
MlsI TGGCCA 1 cut(s) 551
MluCI AATT 1 cut(s) 98
MluNI TGGCCA 1 cut(s) 551
MlyI GAGTC 2 cut(s) 23, 458
MmeI TCCRAC 2 cut(s) 179, 340
Mox20I TGGCCA 1 cut(s) 551
MroXI GAANNNNTTC 1 cut(s) 410
MscI TGGCCA 1 cut(s) 551
MslI CAYNNNNRTG 1 cut(s) 570
Msp20I TGGCCA 1 cut(s) 551
MspI CCGG 3 cut(s) 290, 470, 483
MspR9I CCNGG 2 cut(s) 290, 470
MwoI GCNNNNNNNGC 5 cut(s) 169, 234, 246, 255, 548
NciI CCSGG 2 cut(s) 290, 470
NcoI CCATGG 1 cut(s) 552
NdeII GATC 2 cut(s) 67, 516
NlaIII CATG 5 cut(s) 123, 235, 556, 569, 581
NlaIV GGNNCC 1 cut(s) 30
NspI RCATGY 1 cut(s) 123
NspV TTCGAA 1 cut(s) 102
PcsI WCGNNNNNNNCGW 1 cut(s) 336
PdmI GAANNNNTTC 1 cut(s) 410
PfeI GAWTC 2 cut(s) 144, 319
PfoI TCCNGGA 1 cut(s) 468
PkrI GCNGC 3 cut(s) 227, 239, 257
PleI GAGTC 2 cut(s) 22, 457
PpsI GAGTC 2 cut(s) 22, 457
PspEI GGTNACC 1 cut(s) 268
PspN4I GGNNCC 1 cut(s) 30
PspPI GGNCC 2 cut(s) 171, 283
PstI CTGCAG 1 cut(s) 534
RsaI GTAC 1 cut(s) 206
RsaNI GTAC 1 cut(s) 205
RseI CAYNNNNRTG 1 cut(s) 570
SatI GCNGC 3 cut(s) 226, 238, 256
Sau3AI GATC 2 cut(s) 67, 516
Sau96I GGNCC 2 cut(s) 171, 283
SchI GAGTC 2 cut(s) 23, 458
ScrFI CCNGG 2 cut(s) 290, 470
SduI GDGCHC 4 cut(s) 78, 165, 305, 372
SfcI CTRYAG 1 cut(s) 530
SfuI TTCGAA 1 cut(s) 102
SmiMI CAYNNNNRTG 1 cut(s) 570
SmlI CTYRAG 1 cut(s) 71
SmoI CTYRAG 1 cut(s) 71
Sse9I AATT 1 cut(s) 98
SsiI CCGC 1 cut(s) 237
SspMI CTAG 1 cut(s) 314
StyD4I CCNGG 2 cut(s) 288, 468
StyI CCWWGG 1 cut(s) 552
TaaI ACNGT 3 cut(s) 245, 274, 514
TaiI ACGT 2 cut(s) 128, 342
TaqI TCGA 5 cut(s) 17, 102, 147, 189, 414
TasI AATT 1 cut(s) 98
TauI GCSGC 1 cut(s) 240
TfiI GAWTC 2 cut(s) 144, 319
TscAI CASTG 1 cut(s) 517
TseI GCWGC 2 cut(s) 225, 255
TspDTI ATGAA 1 cut(s) 205
TspRI CASTG 1 cut(s) 517
XapI RAATTY 1 cut(s) 98
XceI RCATGY 1 cut(s) 123
XcmI CCANNNNNNNNNTGG 1 cut(s) 502
XmnI GAANNNNTTC 1 cut(s) 410
XspI CTAG 1 cut(s) 314
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.