Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0015132

Physical Location & Seq

Genomic Coordinates Forward (+)

3289893 .. 3290498

Gene Structure 606 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1043500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGGATGCTAGCTCCGCTCCCCCATATGGTCTAACCCTAGCTGAGTTTTCCGAGCTGGAGAACCTCATCGACACGTACCACAAATTCGAGCCGTCGCCGAACACATGCACGTCGCTAATAACGCAGAAAATCGAAGCTCCGGCGCAGCAGGTTTGGCCATTGGTCCGGAGCTTCGACAGCCCTCACAGATACAAGCACTTTATCAAGAGCTGCAACATGAAAGGCGACGGCGGAGTTGGGAGCATAAGGGAGGTGACGGTGGTTTCGGGGCTTCCGGCGTCGACGAGCACCGAGAGGCTGGAGATTTTGGACGACGAGAAGCACATAATAAGCTTTAGGGTTGTGGGAGGGGAGCACAGGCTTAATAACTATAGGTCTGTTACTTCGGTCAATGAGTTCGTTAACTGCAAAGGCGAGGAGGGGGATAATCAGGTTTACTCGATTGTTTTGGAGTCGTATGTGGTGGACATACCAGAAGGGAACACCGAGGAGGATACAAAGATGTTTGTGGACACTGTGATCAAGTTGAACTTGCAAAAGCTTGGGGTGATGGCTATGGCGGCGAATCTGCATGGCAGTACTGGGGGAGGACATGATCAATCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008289 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009791 GO:0009845 GO:0009892 GO:0009987 GO:0010033 GO:0010035 GO:0010427 GO:0010563 GO:0010605 GO:0010921 GO:0010923 GO:0019220 GO:0019222 GO:0019840 GO:0023052 GO:0031323 GO:0031324 GO:0031399 GO:0031400 GO:0031406 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0032515 GO:0032870 GO:0033293 GO:0033993 GO:0035303 GO:0035304 GO:0035305 GO:0035308 GO:0036094 GO:0042221 GO:0042562 GO:0042802 GO:0042803 GO:0043086 GO:0043167 GO:0043168 GO:0043177 GO:0043178 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043666 GO:0044092 GO:0044424 GO:0044444 GO:0044464 GO:0045936 GO:0046983 GO:0048519 GO:0048523 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051174 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0051716 GO:0060255 GO:0065007 GO:0065009 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0080090 GO:0090351 GO:0097305 GO:0097306 GO:1901700 GO:1901701 GO:1905183

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 map04016 map04075

Pfam Domains

Protein Families

Polyketide_cyc2

Protein Analysis

202

Amino Acids

22.12

Weight (kDa)

5.02

Isoelectric Point (pI)

42.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Polyketide_cyc2	PF10604	41 - 181	2.7e-13	Polyketide cyclase / dehydrase and lipid transport
Bet_v_1	PF00407	62 - 140	4.7e-06	Pathogenesis-related protein Bet v 1 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0015132)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26040
fragaria_vesca	FvH4_2g32040
malus_domestica	MD08G1043500.v1.1 MD15G1060800.v1.1
prunus_persica	Prupe.1G413500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0310701
rosa_laevigata	RLG00000010464
rosa_multiflora	Rmu_co8327855.1_g000001 Rmu_sc0001638.1_g000005
rosa_roxburghii	Rroxscaffold_7G00158340
rosa_rugosa	Rorug06G0382500
rosa_samantha	Rh6AG496400 Rh6BG506200 Rh6CG511800 Rh6DG497600
rosa_wichuraiana	Rw6G043170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	139
AccBSI	CCGCTC	1 cut(s)	17
AccI	GTMKAC	1 cut(s)	281
AccIII	TCCGGA	1 cut(s)	165
AciI	CCGC	3 cut(s)	15, 231, 560
AcoI	YGGCCR	1 cut(s)	155
AcsI	RAATTY	1 cut(s)	83
AcyI	GRCGYC	1 cut(s)	278
AfaI	GTAC	2 cut(s)	77, 580
AfiI	CCNNNNNNNGG	1 cut(s)	26
AflIII	ACRYGT	1 cut(s)	72
AgsI	TTSAA	1 cut(s)	529
AjiI	CACGTC	1 cut(s)	111
AluBI	AGCT	8 cut(s)	12, 41, 55, 137, 171, 210, 333, 541
AluI	AGCT	8 cut(s)	12, 41, 55, 137, 171, 210, 333, 541
Alw21I	GWGCWC	2 cut(s)	290, 357
Aor13HI	TCCGGA	1 cut(s)	165
AoxI	GGCC	1 cut(s)	155
ApeKI	GCWGC	2 cut(s)	145, 210
ApoI	RAATTY	1 cut(s)	83
ArsI	GACNNNNNNTTYG	2 cut(s)	247, 279
AspLEI	GCGC	1 cut(s)	145
AspS9I	GGNCC	1 cut(s)	163
AsuHPI	GGTGA	2 cut(s)	265, 559
AsuNHI	GCTAGC	1 cut(s)	8
AvaII	GGWCC	1 cut(s)	163
BalI	TGGCCA	1 cut(s)	157
Bbv12I	GWGCWC	2 cut(s)	290, 357
BbvI	GCAGC	2 cut(s)	157, 197
BccI	CCATC	1 cut(s)	544
BceAI	ACGGC	2 cut(s)	76, 244
BciVI	GTATCC	1 cut(s)	487
BclI	TGATCA	2 cut(s)	519, 595
BfaI	CTAG	2 cut(s)	9, 38
BfmI	CTRYAG	1 cut(s)	370
BfuAI	ACCTGC	1 cut(s)	139
BfuI	GTATCC	1 cut(s)	487
BisI	GCNGC	3 cut(s)	146, 211, 561
BlsI	GCNGC	3 cut(s)	147, 212, 562
BmcAI	AGTACT	1 cut(s)	580
Bme18I	GGWCC	1 cut(s)	163
BmgBI	CACGTC	1 cut(s)	111
BmgT120I	GGNCC	1 cut(s)	163
BmrI	ACTGGG	1 cut(s)	591
BmtI	GCTAGC	1 cut(s)	12
BmuI	ACTGGG	1 cut(s)	591
BpmI	CTGGAG	2 cut(s)	77, 320
BsaAI	YACGTR	1 cut(s)	75
BsaHI	GRCGYC	1 cut(s)	278
BsaJI	CCNNGG	1 cut(s)	486
BsaWI	WCCGGW	1 cut(s)	165
Bsc4I	CCNNNNNNNGG	1 cut(s)	26
Bse1I	ACTGG	1 cut(s)	586
BseAI	TCCGGA	1 cut(s)	165
BseDI	CCNNGG	1 cut(s)	486
BseGI	GGATG	1 cut(s)	10
BseLI	CCNNNNNNNGG	1 cut(s)	26
BseMII	CTCAG	1 cut(s)	33
BseNI	ACTGG	1 cut(s)	586
BseRI	GAGGAG	2 cut(s)	431, 503
BseXI	GCAGC	2 cut(s)	157, 197
BshFI	GGCC	1 cut(s)	157
BsiHKAI	GWGCWC	2 cut(s)	290, 357
BsiSI	CCGG	3 cut(s)	140, 166, 275
BslI	CCNNNNNNNGG	1 cut(s)	26
BsnI	GGCC	1 cut(s)	157
Bsp1286I	GDGCHC	2 cut(s)	290, 357
Bsp13I	TCCGGA	1 cut(s)	165
Bsp143I	GATC	2 cut(s)	519, 595
BspACI	CCGC	3 cut(s)	15, 231, 560
BspANI	GGCC	1 cut(s)	157
BspCNI	CTCAG	1 cut(s)	34
BspEI	TCCGGA	1 cut(s)	165
BspMI	ACCTGC	1 cut(s)	139
BspOI	GCTAGC	1 cut(s)	12
BsrBI	CCGCTC	1 cut(s)	17
BsrI	ACTGG	1 cut(s)	586
BssECI	CCNNGG	1 cut(s)	486
BssMI	GATC	2 cut(s)	519, 595
BssNI	GRCGYC	1 cut(s)	278
Bst4CI	ACNGT	2 cut(s)	259, 517
BstACI	GRCGYC	1 cut(s)	278
BstBAI	YACGTR	1 cut(s)	75
BstC8I	GCNNGC	1 cut(s)	10
BstDEI	CTNAG	1 cut(s)	42
BstF5I	GGATG	1 cut(s)	10
BstHHI	GCGC	1 cut(s)	145
BstKTI	GATC	2 cut(s)	522, 598
BstMBI	GATC	2 cut(s)	519, 595
BstMWI	GCNNNNNNNGC	5 cut(s)	14, 121, 154, 177, 560
BstNSI	RCATGY	1 cut(s)	108
BstSFI	CTRYAG	1 cut(s)	370
BstV1I	GCAGC	2 cut(s)	157, 197
BsuI	GTATCC	1 cut(s)	487
BsuRI	GGCC	1 cut(s)	157
BtrI	CACGTC	1 cut(s)	111
BtsCI	GGATG	1 cut(s)	10
BtsIMutI	CAGTG	1 cut(s)	513
BveI	ACCTGC	1 cut(s)	139
Cac8I	GCNNGC	1 cut(s)	10
CfoI	GCGC	1 cut(s)	145
Cfr13I	GGNCC	1 cut(s)	163
CseI	GACGC	1 cut(s)	267
Csp6I	GTAC	2 cut(s)	76, 579
CviAII	CATG	4 cut(s)	105, 217, 572, 593
CviQI	GTAC	2 cut(s)	76, 579
DdeI	CTNAG	1 cut(s)	42
DpnI	GATC	2 cut(s)	521, 597
DpnII	GATC	2 cut(s)	519, 595
EaeI	YGGCCR	1 cut(s)	155
EciI	GGCGGA	1 cut(s)	246
Eco47I	GGWCC	1 cut(s)	163
FaeI	CATG	4 cut(s)	108, 220, 575, 596
FalI	AAGNNNNNCTT	2 cut(s)	515, 547
FatI	CATG	4 cut(s)	104, 216, 571, 592
FauNDI	CATATG	1 cut(s)	25
FbaI	TGATCA	2 cut(s)	519, 595
FblI	GTMKAC	1 cut(s)	281
Fnu4HI	GCNGC	3 cut(s)	146, 211, 561
FokI	GGATG	1 cut(s)	17
Fsp4HI	GCNGC	3 cut(s)	146, 211, 561
FspBI	CTAG	2 cut(s)	9, 38
GlaI	GCGC	1 cut(s)	144
GluI	GCNGC	3 cut(s)	146, 211, 561
GsuI	CTGGAG	2 cut(s)	77, 320
HaeIII	GGCC	1 cut(s)	157
HapII	CCGG	3 cut(s)	140, 166, 275
HgaI	GACGC	1 cut(s)	267
HhaI	GCGC	1 cut(s)	145
Hin1I	GRCGYC	1 cut(s)	278
Hin1II	CATG	4 cut(s)	108, 220, 575, 596
Hin6I	GCGC	1 cut(s)	143
HinP1I	GCGC	1 cut(s)	143
HincII	GTYRAC	2 cut(s)	282, 403
HindII	GTYRAC	2 cut(s)	282, 403
HindIII	AAGCTT	2 cut(s)	331, 539
HinfI	GANTC	2 cut(s)	452, 565
HpaI	GTTAAC	1 cut(s)	403
HpaII	CCGG	3 cut(s)	140, 166, 275
HphI	GGTGA	2 cut(s)	265, 559
Hpy166II	GTNNAC	5 cut(s)	282, 403, 436, 466, 511
Hpy188I	TCNGA	1 cut(s)	52
Hpy188III	TCNNGA	2 cut(s)	166, 205
Hpy8I	GTNNAC	5 cut(s)	282, 403, 436, 466, 511
Hpy99I	CGWCG	6 cut(s)	97, 115, 230, 283, 286, 317
HpyAV	CCTTC	1 cut(s)	470
HpyCH4III	ACNGT	2 cut(s)	259, 517
HpyCH4IV	ACGT	2 cut(s)	74, 110
HpyCH4V	TGCA	5 cut(s)	108, 213, 408, 535, 571
HpyF10VI	GCNNNNNNNGC	5 cut(s)	14, 121, 154, 177, 560
HpyF3I	CTNAG	1 cut(s)	42
HpySE526I	ACGT	2 cut(s)	74, 110
Hsp92I	GRCGYC	1 cut(s)	278
Hsp92II	CATG	4 cut(s)	108, 220, 575, 596
HspAI	GCGC	1 cut(s)	143
Kpn2I	TCCGGA	1 cut(s)	165
Ksp22I	TGATCA	2 cut(s)	519, 595
KspAI	GTTAAC	1 cut(s)	403
Kzo9I	GATC	2 cut(s)	519, 595
LmnI	GCTCC	6 cut(s)	17, 22, 142, 168, 240, 352
Lsp1109I	GCAGC	2 cut(s)	157, 197
MaeI	CTAG	2 cut(s)	9, 38
MaeII	ACGT	2 cut(s)	74, 110
MaeIII	GTNAC	2 cut(s)	253, 379
MalI	GATC	2 cut(s)	521, 597
MbiI	CCGCTC	1 cut(s)	17
MboI	GATC	2 cut(s)	519, 595
MhlI	GDGCHC	2 cut(s)	290, 357
MlsI	TGGCCA	1 cut(s)	157
MluCI	AATT	1 cut(s)	83
MluNI	TGGCCA	1 cut(s)	157
MlyI	GAGTC	1 cut(s)	461
Mox20I	TGGCCA	1 cut(s)	157
MroI	TCCGGA	1 cut(s)	165
MscI	TGGCCA	1 cut(s)	157
MseI	TTAA	2 cut(s)	363, 402
Msp20I	TGGCCA	1 cut(s)	157
MspI	CCGG	3 cut(s)	140, 166, 275
MwoI	GCNNNNNNNGC	5 cut(s)	14, 121, 154, 177, 560
NdeI	CATATG	1 cut(s)	25
NdeII	GATC	2 cut(s)	519, 595
NheI	GCTAGC	1 cut(s)	8
NlaIII	CATG	4 cut(s)	108, 220, 575, 596
NmuCI	GTSAC	1 cut(s)	253
NspI	RCATGY	1 cut(s)	108
PfeI	GAWTC	1 cut(s)	565
PkrI	GCNGC	3 cut(s)	147, 212, 562
PleI	GAGTC	1 cut(s)	460
PpsI	GAGTC	1 cut(s)	460
Ppu21I	YACGTR	1 cut(s)	75
PspPI	GGNCC	1 cut(s)	163
RsaI	GTAC	2 cut(s)	77, 580
RsaNI	GTAC	2 cut(s)	76, 579
SalI	GTCGAC	1 cut(s)	280
SaqAI	TTAA	2 cut(s)	363, 402
SatI	GCNGC	3 cut(s)	146, 211, 561
Sau3AI	GATC	2 cut(s)	519, 595
Sau96I	GGNCC	1 cut(s)	163
ScaI	AGTACT	1 cut(s)	580
SchI	GAGTC	1 cut(s)	461
SduI	GDGCHC	2 cut(s)	290, 357
SfcI	CTRYAG	1 cut(s)	370
SgrDI	CGTCGACG	1 cut(s)	280
SinI	GGWCC	1 cut(s)	163
Sse9I	AATT	1 cut(s)	83
SsiI	CCGC	3 cut(s)	15, 231, 560
SspMI	CTAG	2 cut(s)	9, 38
TaaI	ACNGT	2 cut(s)	259, 517
TaiI	ACGT	2 cut(s)	77, 113
TaqI	TCGA	6 cut(s)	69, 87, 132, 174, 281, 440
TaqII	GACCGA	1 cut(s)	376
TasI	AATT	1 cut(s)	83
TatI	WGTACW	1 cut(s)	578
TauI	GCSGC	1 cut(s)	563
TfiI	GAWTC	1 cut(s)	565
Tru1I	TTAA	2 cut(s)	363, 402
Tru9I	TTAA	2 cut(s)	363, 402
TscAI	CASTG	1 cut(s)	520
TseFI	GTSAC	1 cut(s)	253
TseI	GCWGC	2 cut(s)	145, 210
Tsp45I	GTSAC	1 cut(s)	253
TspDTI	ATGAA	1 cut(s)	233
TspRI	CASTG	1 cut(s)	520
VpaK11BI	GGWCC	1 cut(s)	163
XapI	RAATTY	1 cut(s)	83
XceI	RCATGY	1 cut(s)	108
XmiI	GTMKAC	1 cut(s)	281
XspI	CTAG	2 cut(s)	9, 38
ZrmI	AGTACT	1 cut(s)	580

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.