Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0015132

Physical Location & Seq

Genomic Coordinates Forward (+)

4091781 .. 4092389

Gene Structure 609 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1060800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGGATGCTGGCCACGCTCCGCCATATGGTCTAACCCTAGCTGAGTTTTCCGAGCTGGAGGGCCTCATCGACGCGTACCACAAATTCGAGCCGTCGCCGAACACATGCACGTCGCTAATAACGCAGAAAATCGAAGCTCCGGCACAGCAAATTTGGCCGTTGGTCCGGAACTTCGACAACCCTAAAAAATACAAGCACTTCATCAAGAGCTGCAACATGAAAGGCGACGGCGGAGTTGGGAGCATAAGGGAGGTGACGGTGGTTTCGGGGCTCCCGGCGTCGACGAGCACCGAGAGGCTGGAGATTTTGGACGACGAGAAGCACATAATAAGCTTTAGAGTTATGGGAGGGGAGCACAGGCTTAATAACTATAGGTCGGTTACTTCGGTTAATGAGTTCGTTAATTGCGATGGTGAGGAGGGGAATAATCAGGTGTACTCGATTGTTTTGGAGTCGTATGTGGTGGACATACCAGGAGGGAACACCGGGGAGGATACAAAGATGTTTGTGGACACTGTGATCAAGTTGAACTTGCAAAAGCTTGGAGTGGTGGCTATGGCGGCGAATGTTGTGCATGGCAACACTGGAGGAGGACATGATCAATCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008289 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009791 GO:0009845 GO:0009892 GO:0009987 GO:0010033 GO:0010035 GO:0010427 GO:0010563 GO:0010605 GO:0010921 GO:0010923 GO:0019220 GO:0019222 GO:0019840 GO:0023052 GO:0031323 GO:0031324 GO:0031399 GO:0031400 GO:0031406 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0032515 GO:0032870 GO:0033293 GO:0033993 GO:0035303 GO:0035304 GO:0035305 GO:0035308 GO:0036094 GO:0042221 GO:0042562 GO:0042802 GO:0042803 GO:0043086 GO:0043167 GO:0043168 GO:0043177 GO:0043178 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043666 GO:0044092 GO:0044424 GO:0044444 GO:0044464 GO:0045936 GO:0046983 GO:0048519 GO:0048523 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051174 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0051716 GO:0060255 GO:0065007 GO:0065009 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0080090 GO:0090351 GO:0097305 GO:0097306 GO:1901700 GO:1901701 GO:1905183

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 map04016 map04075

Pfam Domains

Protein Families

Polyketide_cyc2

Protein Analysis

203

Amino Acids

22.04

Weight (kDa)

5.2

Isoelectric Point (pI)

33.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Polyketide_cyc2	PF10604	41 - 181	8.8e-13	Polyketide cyclase / dehydrase and lipid transport
Bet_v_1	PF00407	56 - 134	1.8e-06	Pathogenesis-related protein Bet v 1 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015132)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26040
fragaria_vesca	FvH4_2g32040
malus_domestica	MD08G1043500.v1.1 MD15G1060800.v1.1
prunus_persica	Prupe.1G413500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0310701
rosa_laevigata	RLG00000010464
rosa_multiflora	Rmu_co8327855.1_g000001 Rmu_sc0001638.1_g000005
rosa_roxburghii	Rroxscaffold_7G00158340
rosa_rugosa	Rorug06G0382500
rosa_samantha	Rh6AG496400 Rh6BG506200 Rh6CG511800 Rh6DG497600
rosa_wichuraiana	Rw6G043170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	281
AccII	CGCG	1 cut(s)	74
AccIII	TCCGGA	1 cut(s)	165
AciI	CCGC	3 cut(s)	20, 231, 560
AcoI	YGGCCR	2 cut(s)	10, 155
AcsI	RAATTY	2 cut(s)	83, 150
AcyI	GRCGYC	1 cut(s)	278
AfaI	GTAC	2 cut(s)	77, 437
AfiI	CCNNNNNNNGG	1 cut(s)	26
AflIII	ACRYGT	1 cut(s)	72
AgsI	TTSAA	1 cut(s)	529
AjiI	CACGTC	1 cut(s)	111
AjnI	CCWGG	1 cut(s)	472
AluBI	AGCT	6 cut(s)	41, 55, 137, 210, 333, 541
AluI	AGCT	6 cut(s)	41, 55, 137, 210, 333, 541
Alw21I	GWGCWC	2 cut(s)	290, 357
Aor13HI	TCCGGA	1 cut(s)	165
AoxI	GGCC	3 cut(s)	10, 61, 155
ApeKI	GCWGC	1 cut(s)	210
ApoI	RAATTY	2 cut(s)	83, 150
ArsI	GACNNNNNNTTYG	2 cut(s)	247, 279
AspS9I	GGNCC	2 cut(s)	61, 163
AsuC2I	CCSGG	2 cut(s)	275, 487
AsuHPI	GGTGA	2 cut(s)	265, 425
AvaII	GGWCC	1 cut(s)	163
BalI	TGGCCA	1 cut(s)	12
BanII	GRGCYC	1 cut(s)	273
Bbv12I	GWGCWC	2 cut(s)	290, 357
BbvI	GCAGC	1 cut(s)	197
BccI	CCATC	1 cut(s)	404
BceAI	ACGGC	3 cut(s)	76, 142, 244
BcgI	CGANNNNNNTGC	2 cut(s)	553, 587
BciT130I	CCWGG	1 cut(s)	474
BciVI	GTATCC	1 cut(s)	487
BclI	TGATCA	2 cut(s)	519, 598
BcnI	CCSGG	2 cut(s)	275, 487
BfaI	CTAG	1 cut(s)	38
BfmI	CTRYAG	1 cut(s)	370
BfuI	GTATCC	1 cut(s)	487
BisI	GCNGC	2 cut(s)	211, 561
BlsI	GCNGC	2 cut(s)	212, 562
Bme1390I	CCNGG	3 cut(s)	275, 474, 487
Bme18I	GGWCC	1 cut(s)	163
BmgBI	CACGTC	1 cut(s)	111
BmgT120I	GGNCC	2 cut(s)	61, 163
BmiI	GGNNCC	1 cut(s)	272
BmrFI	CCNGG	3 cut(s)	275, 474, 487
BpmI	CTGGAG	3 cut(s)	77, 320, 606
BpuMI	CCSGG	2 cut(s)	275, 487
BsaHI	GRCGYC	1 cut(s)	278
BsaJI	CCNNGG	1 cut(s)	486
BsaWI	WCCGGW	1 cut(s)	165
Bsc4I	CCNNNNNNNGG	1 cut(s)	26
Bse1I	ACTGG	1 cut(s)	589
BseAI	TCCGGA	1 cut(s)	165
BseBI	CCWGG	1 cut(s)	474
BseDI	CCNNGG	1 cut(s)	486
BseGI	GGATG	1 cut(s)	10
BseLI	CCNNNNNNNGG	1 cut(s)	26
BseMII	CTCAG	1 cut(s)	33
BseNI	ACTGG	1 cut(s)	589
BseRI	GAGGAG	2 cut(s)	431, 603
BseXI	GCAGC	1 cut(s)	197
Bsh1236I	CGCG	1 cut(s)	74
BshFI	GGCC	3 cut(s)	12, 63, 157
BsiHKAI	GWGCWC	2 cut(s)	290, 357
BsiSI	CCGG	4 cut(s)	140, 166, 275, 486
BslI	CCNNNNNNNGG	1 cut(s)	26
BsnI	GGCC	3 cut(s)	12, 63, 157
Bsp1286I	GDGCHC	3 cut(s)	273, 290, 357
Bsp13I	TCCGGA	1 cut(s)	165
Bsp143I	GATC	2 cut(s)	519, 598
BspACI	CCGC	3 cut(s)	20, 231, 560
BspANI	GGCC	3 cut(s)	12, 63, 157
BspCNI	CTCAG	1 cut(s)	34
BspEI	TCCGGA	1 cut(s)	165
BspFNI	CGCG	1 cut(s)	74
BspHI	TCATGA	1 cut(s)	605
BspLI	GGNNCC	1 cut(s)	272
BsrI	ACTGG	1 cut(s)	589
BssECI	CCNNGG	1 cut(s)	486
BssMI	GATC	2 cut(s)	519, 598
BssNI	GRCGYC	1 cut(s)	278
Bst2UI	CCWGG	1 cut(s)	474
Bst4CI	ACNGT	2 cut(s)	259, 517
BstACI	GRCGYC	1 cut(s)	278
BstC8I	GCNNGC	1 cut(s)	10
BstDEI	CTNAG	1 cut(s)	42
BstF5I	GGATG	1 cut(s)	10
BstFNI	CGCG	1 cut(s)	74
BstKTI	GATC	2 cut(s)	522, 601
BstMBI	GATC	2 cut(s)	519, 598
BstMWI	GCNNNNNNNGC	4 cut(s)	14, 121, 154, 560
BstNI	CCWGG	1 cut(s)	474
BstNSI	RCATGY	1 cut(s)	108
BstSCI	CCNGG	3 cut(s)	273, 472, 485
BstSFI	CTRYAG	1 cut(s)	370
BstUI	CGCG	1 cut(s)	74
BstV1I	GCAGC	1 cut(s)	197
BsuI	GTATCC	1 cut(s)	487
BsuRI	GGCC	3 cut(s)	12, 63, 157
BtgZI	GCGATG	1 cut(s)	423
BtrI	CACGTC	1 cut(s)	111
BtsCI	GGATG	1 cut(s)	10
BtsIMutI	CAGTG	2 cut(s)	513, 582
Cac8I	GCNNGC	1 cut(s)	10
CciI	TCATGA	1 cut(s)	605
Cfr13I	GGNCC	2 cut(s)	61, 163
CseI	GACGC	2 cut(s)	80, 267
Csp6I	GTAC	2 cut(s)	76, 436
CviAII	CATG	5 cut(s)	105, 217, 575, 596, 606
CviQI	GTAC	2 cut(s)	76, 436
DdeI	CTNAG	1 cut(s)	42
DpnI	GATC	2 cut(s)	521, 600
DpnII	GATC	2 cut(s)	519, 598
EaeI	YGGCCR	2 cut(s)	10, 155
EciI	GGCGGA	2 cut(s)	9, 246
Eco24I	GRGCYC	1 cut(s)	273
Eco47I	GGWCC	1 cut(s)	163
EcoO109I	RGGNCCY	1 cut(s)	61
EcoRII	CCWGG	1 cut(s)	472
EcoT38I	GRGCYC	1 cut(s)	273
FaeI	CATG	5 cut(s)	108, 220, 578, 599, 609
FalI	AAGNNNNNCTT	2 cut(s)	515, 547
FatI	CATG	5 cut(s)	104, 216, 574, 595, 605
FauNDI	CATATG	1 cut(s)	25
FbaI	TGATCA	2 cut(s)	519, 598
FblI	GTMKAC	1 cut(s)	281
Fnu4HI	GCNGC	2 cut(s)	211, 561
FokI	GGATG	1 cut(s)	17
FriOI	GRGCYC	1 cut(s)	273
Fsp4HI	GCNGC	2 cut(s)	211, 561
FspBI	CTAG	1 cut(s)	38
GluI	GCNGC	2 cut(s)	211, 561
GsuI	CTGGAG	3 cut(s)	77, 320, 606
HaeIII	GGCC	3 cut(s)	12, 63, 157
HapII	CCGG	4 cut(s)	140, 166, 275, 486
HgaI	GACGC	2 cut(s)	80, 267
Hin1I	GRCGYC	1 cut(s)	278
Hin1II	CATG	5 cut(s)	108, 220, 578, 599, 609
HincII	GTYRAC	1 cut(s)	282
HindII	GTYRAC	1 cut(s)	282
HindIII	AAGCTT	2 cut(s)	331, 539
HinfI	GANTC	1 cut(s)	452
HpaII	CCGG	4 cut(s)	140, 166, 275, 486
HphI	GGTGA	2 cut(s)	265, 425
Hpy166II	GTNNAC	4 cut(s)	282, 436, 466, 511
Hpy188I	TCNGA	1 cut(s)	52
Hpy188III	TCNNGA	3 cut(s)	166, 205, 606
Hpy8I	GTNNAC	4 cut(s)	282, 436, 466, 511
Hpy99I	CGWCG	7 cut(s)	74, 97, 115, 230, 283, 286, 317
HpyCH4III	ACNGT	2 cut(s)	259, 517
HpyCH4IV	ACGT	1 cut(s)	110
HpyCH4V	TGCA	4 cut(s)	108, 213, 535, 574
HpyF10VI	GCNNNNNNNGC	4 cut(s)	14, 121, 154, 560
HpyF3I	CTNAG	1 cut(s)	42
HpySE526I	ACGT	1 cut(s)	110
Hsp92I	GRCGYC	1 cut(s)	278
Hsp92II	CATG	5 cut(s)	108, 220, 578, 599, 609
Kpn2I	TCCGGA	1 cut(s)	165
Ksp22I	TGATCA	2 cut(s)	519, 598
Kzo9I	GATC	2 cut(s)	519, 598
LmnI	GCTCC	5 cut(s)	22, 142, 240, 276, 352
Lsp1109I	GCAGC	1 cut(s)	197
MaeI	CTAG	1 cut(s)	38
MaeII	ACGT	1 cut(s)	110
MaeIII	GTNAC	2 cut(s)	253, 379
MalI	GATC	2 cut(s)	521, 600
MboI	GATC	2 cut(s)	519, 598
MhlI	GDGCHC	3 cut(s)	273, 290, 357
MlsI	TGGCCA	1 cut(s)	12
MluCI	AATT	3 cut(s)	83, 150, 403
MluI	ACGCGT	1 cut(s)	72
MluNI	TGGCCA	1 cut(s)	12
MlyI	GAGTC	1 cut(s)	461
Mox20I	TGGCCA	1 cut(s)	12
MroI	TCCGGA	1 cut(s)	165
MscI	TGGCCA	1 cut(s)	12
MseI	TTAA	3 cut(s)	363, 390, 402
Msp20I	TGGCCA	1 cut(s)	12
MspI	CCGG	4 cut(s)	140, 166, 275, 486
MspR9I	CCNGG	3 cut(s)	275, 474, 487
MvaI	CCWGG	1 cut(s)	474
MvnI	CGCG	1 cut(s)	74
MwoI	GCNNNNNNNGC	4 cut(s)	14, 121, 154, 560
NciI	CCSGG	2 cut(s)	275, 487
NdeI	CATATG	1 cut(s)	25
NdeII	GATC	2 cut(s)	519, 598
NlaIII	CATG	5 cut(s)	108, 220, 578, 599, 609
NlaIV	GGNNCC	1 cut(s)	272
NmuCI	GTSAC	1 cut(s)	253
NspI	RCATGY	1 cut(s)	108
PagI	TCATGA	1 cut(s)	605
PcsI	WCGNNNNNNNCGW	1 cut(s)	405
PkrI	GCNGC	2 cut(s)	212, 562
PleI	GAGTC	1 cut(s)	460
PpsI	GAGTC	1 cut(s)	460
Psp6I	CCWGG	1 cut(s)	472
PspGI	CCWGG	1 cut(s)	472
PspN4I	GGNNCC	1 cut(s)	272
PspPI	GGNCC	2 cut(s)	61, 163
RsaI	GTAC	2 cut(s)	77, 437
RsaNI	GTAC	2 cut(s)	76, 436
SalI	GTCGAC	1 cut(s)	280
SaqAI	TTAA	3 cut(s)	363, 390, 402
SatI	GCNGC	2 cut(s)	211, 561
Sau3AI	GATC	2 cut(s)	519, 598
Sau96I	GGNCC	2 cut(s)	61, 163
SchI	GAGTC	1 cut(s)	461
ScrFI	CCNGG	3 cut(s)	275, 474, 487
SduI	GDGCHC	3 cut(s)	273, 290, 357
SfcI	CTRYAG	1 cut(s)	370
SgrDI	CGTCGACG	1 cut(s)	280
SinI	GGWCC	1 cut(s)	163
Sse9I	AATT	3 cut(s)	83, 150, 403
SsiI	CCGC	3 cut(s)	20, 231, 560
SspMI	CTAG	1 cut(s)	38
StyD4I	CCNGG	3 cut(s)	273, 472, 485
TaaI	ACNGT	2 cut(s)	259, 517
TaiI	ACGT	1 cut(s)	113
TaqI	TCGA	6 cut(s)	69, 87, 132, 174, 281, 440
TasI	AATT	3 cut(s)	83, 150, 403
TatI	WGTACW	1 cut(s)	435
TauI	GCSGC	1 cut(s)	563
Tru1I	TTAA	3 cut(s)	363, 390, 402
Tru9I	TTAA	3 cut(s)	363, 390, 402
TscAI	CASTG	2 cut(s)	520, 589
TseFI	GTSAC	1 cut(s)	253
TseI	GCWGC	1 cut(s)	210
Tsp45I	GTSAC	1 cut(s)	253
TspDTI	ATGAA	2 cut(s)	190, 233
TspRI	CASTG	2 cut(s)	520, 589
VpaK11BI	GGWCC	1 cut(s)	163
XapI	RAATTY	2 cut(s)	83, 150
XceI	RCATGY	1 cut(s)	108
XmiI	GTMKAC	1 cut(s)	281
XspI	CTAG	1 cut(s)	38

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.