Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0016768

Physical Location & Seq

Genomic Coordinates Forward (+)

24410686 .. 24412489

Gene Structure 1804 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g32070.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

ATGGCGAGGTTGGTCGTCATTTTCGATTTCGACAAGACGATCATCGACTGTGACAGCGACAACTGGGTTGTGGAAGAGCTGGGTATCAACCACTTGTTCACTCAGCTCCTCCACAATTTTCCTTGGAACGCTATTATGGATAGGATGATGACAGAGCTTCACCATAGGGGAAAGACGATTGAGGACATTGAAGAGTGTTTGAAGAAGGTTCCACTGCATCCCAGCATTGCCTCTGCAATCGAATCGGTCCATGCTTTAGGGTGTGATCTGAGGATTGTGAGTGATGCAAATGTGTTTTTCATAGAGACAATCTTGAAACATCATGGGCTACTGGACTATTTTTCAGAAATCAACACCAACCCAGGCTTTGTTGATGAACAAGGCAGGCTTAGAATCTTGCCCTACTATGATTTCAGCTCATCATCTCATGGCTGCAACATTTGCCCTTCCAATATGTGCAAGGGTCTGGTGATGGAGAAGATCCGAGCTTCTGTTTCGGCAGATGGAAAGAAGCAGTTGGTCTATGTTGGGGATGGAACTCCCGATTTTTGCGCAGGCTTGAAACTTGAAGAAGGAGATGTCCTGATGCCAAGGAAGGACTTTCCTATCTGTGATCTAATATCTGCCAACCCATTGCTTATCAAGGCAAAAATTCATGAATGGAGCAATTGGGATGAGCTTAGTACTAATTTGCTAAGCACAGTGAACAATGCCCTTATTGATGAGTCTGCGAAAACCGATCAATTGGTTCCACTTTGCAAGTACCAAAACAGTTCGATATCTGTTACTGCCCATGAAGCCCTTCAGAAAGCTCTTCCAGTTTCACCTCCCCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001501 GO:0001503 GO:0001958 GO:0003674 GO:0003824 GO:0004427 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006629 GO:0006644 GO:0006646 GO:0006650 GO:0006656 GO:0006793 GO:0006796 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009653 GO:0009887 GO:0009888 GO:0009987 GO:0016043 GO:0016311 GO:0016462 GO:0016787 GO:0016788 GO:0016791 GO:0016817 GO:0016818 GO:0019637 GO:0021700 GO:0022607 GO:0030282 GO:0031012 GO:0031214 GO:0032501 GO:0032502 GO:0035630 GO:0036075 GO:0042578 GO:0043226 GO:0043227 GO:0043230 GO:0043931 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0045017 GO:0046337 GO:0046470 GO:0046474 GO:0046486 GO:0048513 GO:0048705 GO:0048731 GO:0048799 GO:0048856 GO:0051259 GO:0051262 GO:0052731 GO:0052732 GO:0060348 GO:0060349 GO:0060350 GO:0065003 GO:0065010 GO:0070977 GO:0071695 GO:0071704 GO:0071840 GO:0090407 GO:0097164 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00564 ko00750 ko01100 map00564 map00750 map01100

Pfam Domains

Protein Families

Put_Phosphatase

Protein Analysis

279

Amino Acids

31.13

Weight (kDa)

5.22

Isoelectric Point (pI)

40.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Put_Phosphatase	PF06888	5 - 234	3.2e-87	Putative Phosphatase
HAD	PF12710	6 - 118	2.1e-06	haloacid dehalogenase-like hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016768)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g32070
malus_domestica	MD15G1061100.v1.1
prunus_persica	Prupe.1G413800_v2.0.a1
pyrus_communis	pycom15g05720
rosa_chinensis	RchiOBHm_Chr6g0310671
rosa_laevigata	RLG00000010467
rosa_multiflora	Rmu_sc0002546.1_g000002
rosa_roxburghii	Rroxscaffold_7G00158360
rosa_rugosa	Rorug06G0382100
rosa_samantha	Rh6AG496100 Rh6BG505600 Rh6CG511300 Rh6DG497000
rosa_wichuraiana	Rw6G043140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	553
AclWI	GGATC	1 cut(s)	475
AcsI	RAATTY	1 cut(s)	651
AcuI	CTGAAG	1 cut(s)	788
AfaI	GTAC	2 cut(s)	685, 764
AgsI	TTSAA	5 cut(s)	191, 202, 316, 562, 569
AjnI	CCWGG	1 cut(s)	361
AluBI	AGCT	7 cut(s)	79, 106, 157, 417, 488, 679, 812
AluI	AGCT	7 cut(s)	79, 106, 157, 417, 488, 679, 812
Alw26I	GTCTC	1 cut(s)	299
AlwI	GGATC	1 cut(s)	475
ApeKI	GCWGC	1 cut(s)	432
ApoI	RAATTY	1 cut(s)	651
Asp700I	GAANNNNTTC	1 cut(s)	801
AspLEI	GCGC	1 cut(s)	554
AspS9I	GGNCC	1 cut(s)	247
AsuHPI	GGTGA	3 cut(s)	152, 481, 816
AvaII	GGWCC	1 cut(s)	247
BbvI	GCAGC	1 cut(s)	419
BccI	CCATC	3 cut(s)	466, 497, 527
BcgI	CGANNNNNNTGC	2 cut(s)	225, 259
BciT130I	CCWGG	1 cut(s)	363
BcoDI	GTCTC	1 cut(s)	299
BfaI	CTAG	1 cut(s)	835
BisI	GCNGC	1 cut(s)	433
BlpI	GCTNAGC	1 cut(s)	695
BlsI	GCNGC	1 cut(s)	434
BmcAI	AGTACT	1 cut(s)	685
Bme1390I	CCNGG	1 cut(s)	363
Bme18I	GGWCC	1 cut(s)	247
BmgT120I	GGNCC	1 cut(s)	247
BmiI	GGNNCC	2 cut(s)	210, 750
BmrFI	CCNGG	1 cut(s)	363
BmrI	ACTGGG	1 cut(s)	73
BmsI	GCATC	3 cut(s)	226, 274, 576
BmuI	ACTGGG	1 cut(s)	73
Bpu1102I	GCTNAGC	1 cut(s)	695
BsaJI	CCNNGG	3 cut(s)	122, 361, 590
Bse1I	ACTGG	3 cut(s)	68, 336, 818
Bse3DI	GCAATG	2 cut(s)	225, 632
BseBI	CCWGG	1 cut(s)	363
BseDI	CCNNGG	3 cut(s)	122, 361, 590
BseGI	GGATG	4 cut(s)	150, 217, 538, 679
BseMI	GCAATG	2 cut(s)	225, 632
BseMII	CTCAG	2 cut(s)	116, 260
BseNI	ACTGG	3 cut(s)	68, 336, 818
BseRI	GAGGAG	1 cut(s)	98
BseXI	GCAGC	1 cut(s)	419
BseYI	CCCAGC	2 cut(s)	79, 221
BsmAI	GTCTC	1 cut(s)	299
Bsp143I	GATC	5 cut(s)	39, 265, 480, 613, 739
Bsp1720I	GCTNAGC	1 cut(s)	695
BspCNI	CTCAG	2 cut(s)	115, 261
BspHI	TCATGA	1 cut(s)	655
BspLI	GGNNCC	2 cut(s)	210, 750
BspPI	GGATC	1 cut(s)	475
BspQI	GCTCTTC	2 cut(s)	69, 819
BsrDI	GCAATG	2 cut(s)	225, 632
BsrI	ACTGG	3 cut(s)	68, 336, 818
BssECI	CCNNGG	3 cut(s)	122, 361, 590
BssMI	GATC	5 cut(s)	39, 265, 480, 613, 739
BssT1I	CCWWGG	2 cut(s)	122, 590
Bst2UI	CCWGG	1 cut(s)	363
Bst4CI	ACNGT	3 cut(s)	50, 703, 773
Bst6I	CTCTTC	3 cut(s)	69, 186, 819
BstAPI	GCANNNNNTGC	1 cut(s)	441
BstC8I	GCNNGC	2 cut(s)	386, 556
BstDEI	CTNAG	5 cut(s)	102, 269, 389, 680, 695
BstF5I	GGATG	4 cut(s)	150, 217, 538, 679
BstHHI	GCGC	1 cut(s)	554
BstKTI	GATC	5 cut(s)	42, 268, 483, 616, 742
BstMAI	GTCTC	1 cut(s)	299
BstMBI	GATC	5 cut(s)	39, 265, 480, 613, 739
BstMWI	GCNNNNNNNGC	2 cut(s)	441, 797
BstNI	CCWGG	1 cut(s)	363
BstSCI	CCNGG	1 cut(s)	361
BstV1I	GCAGC	1 cut(s)	419
BstX2I	RGATCY	1 cut(s)	480
BstYI	RGATCY	1 cut(s)	480
BtsCI	GGATG	4 cut(s)	150, 217, 538, 679
BtsI	GCAGTG	1 cut(s)	212
BtsIMutI	CAGTG	2 cut(s)	212, 708
Cac8I	GCNNGC	2 cut(s)	386, 556
CciI	TCATGA	1 cut(s)	655
CfoI	GCGC	1 cut(s)	554
Cfr13I	GGNCC	1 cut(s)	247
Csp6I	GTAC	2 cut(s)	684, 763
CviAII	CATG	5 cut(s)	251, 323, 428, 656, 794
CviQI	GTAC	2 cut(s)	684, 763
DdeI	CTNAG	5 cut(s)	102, 269, 389, 680, 695
DpnI	GATC	5 cut(s)	41, 267, 482, 615, 741
DpnII	GATC	5 cut(s)	39, 265, 480, 613, 739
Eam1104I	CTCTTC	3 cut(s)	69, 186, 819
EarI	CTCTTC	3 cut(s)	69, 186, 819
Eco130I	CCWWGG	2 cut(s)	122, 590
Eco32I	GATATC	1 cut(s)	780
Eco47I	GGWCC	1 cut(s)	247
Eco57I	CTGAAG	1 cut(s)	788
EcoRII	CCWGG	1 cut(s)	361
EcoRV	GATATC	1 cut(s)	780
EcoT14I	CCWWGG	2 cut(s)	122, 590
ErhI	CCWWGG	2 cut(s)	122, 590
FaeI	CATG	5 cut(s)	254, 326, 431, 659, 797
FalI	AAGNNNNNCTT	2 cut(s)	372, 404
FatI	CATG	5 cut(s)	250, 322, 427, 655, 793
Fnu4HI	GCNGC	1 cut(s)	433
FokI	GGATG	4 cut(s)	157, 204, 545, 686
Fsp4HI	GCNGC	1 cut(s)	433
FspBI	CTAG	1 cut(s)	835
FspI	TGCGCA	1 cut(s)	553
GlaI	GCGC	1 cut(s)	553
GluI	GCNGC	1 cut(s)	433
GsaI	CCCAGC	2 cut(s)	83, 225
HhaI	GCGC	1 cut(s)	554
Hin1II	CATG	5 cut(s)	254, 326, 431, 659, 797
Hin6I	GCGC	1 cut(s)	552
HinP1I	GCGC	1 cut(s)	552
HinfI	GANTC	3 cut(s)	242, 393, 725
HphI	GGTGA	3 cut(s)	152, 481, 816
Hpy166II	GTNNAC	2 cut(s)	99, 706
Hpy188I	TCNGA	4 cut(s)	270, 346, 485, 807
Hpy188III	TCNNGA	4 cut(s)	313, 542, 583, 656
Hpy8I	GTNNAC	2 cut(s)	99, 706
HpyAV	CCTTC	5 cut(s)	199, 456, 566, 589, 812
HpyCH4III	ACNGT	3 cut(s)	50, 703, 773
HpyCH4V	TGCA	6 cut(s)	217, 236, 287, 435, 459, 759
HpyF10VI	GCNNNNNNNGC	2 cut(s)	441, 797
HpyF3I	CTNAG	5 cut(s)	102, 269, 389, 680, 695
Hsp92II	CATG	5 cut(s)	254, 326, 431, 659, 797
HspAI	GCGC	1 cut(s)	552
Kzo9I	GATC	5 cut(s)	39, 265, 480, 613, 739
LguI	GCTCTTC	2 cut(s)	69, 819
LmnI	GCTCC	2 cut(s)	111, 663
Lsp1109I	GCAGC	1 cut(s)	419
LweI	GCATC	3 cut(s)	226, 274, 576
MaeI	CTAG	1 cut(s)	835
MaeIII	GTNAC	2 cut(s)	50, 784
MalI	GATC	5 cut(s)	41, 267, 482, 615, 741
MboI	GATC	5 cut(s)	39, 265, 480, 613, 739
MboII	GAAGA	6 cut(s)	86, 203, 214, 490, 581, 806
MfeI	CAATTG	2 cut(s)	667, 743
MflI	RGATCY	1 cut(s)	480
MluCI	AATT	5 cut(s)	115, 651, 667, 688, 743
MlyI	GAGTC	1 cut(s)	734
MnlI	CCTC	5 cut(s)	119, 175, 241, 264, 837
MroXI	GAANNNNTTC	1 cut(s)	801
MspR9I	CCNGG	1 cut(s)	363
MunI	CAATTG	2 cut(s)	667, 743
MvaI	CCWGG	1 cut(s)	363
MwoI	GCNNNNNNNGC	2 cut(s)	441, 797
NdeII	GATC	5 cut(s)	39, 265, 480, 613, 739
NlaIII	CATG	5 cut(s)	254, 326, 431, 659, 797
NlaIV	GGNNCC	2 cut(s)	210, 750
NmuCI	GTSAC	1 cut(s)	50
NsbI	TGCGCA	1 cut(s)	553
PagI	TCATGA	1 cut(s)	655
PciSI	GCTCTTC	2 cut(s)	69, 819
PcsI	WCGNNNNNNNCGW	1 cut(s)	21
PdmI	GAANNNNTTC	1 cut(s)	801
PfeI	GAWTC	2 cut(s)	242, 393
PkrI	GCNGC	1 cut(s)	434
PleI	GAGTC	1 cut(s)	733
PpsI	GAGTC	1 cut(s)	733
Psp6I	CCWGG	1 cut(s)	361
PspFI	CCCAGC	2 cut(s)	79, 221
PspGI	CCWGG	1 cut(s)	361
PspN4I	GGNNCC	2 cut(s)	210, 750
PspPI	GGNCC	1 cut(s)	247
PsuI	RGATCY	1 cut(s)	480
RsaI	GTAC	2 cut(s)	685, 764
RsaNI	GTAC	2 cut(s)	684, 763
SapI	GCTCTTC	2 cut(s)	69, 819
SatI	GCNGC	1 cut(s)	433
Sau3AI	GATC	5 cut(s)	39, 265, 480, 613, 739
Sau96I	GGNCC	1 cut(s)	247
ScaI	AGTACT	1 cut(s)	685
SchI	GAGTC	1 cut(s)	734
ScrFI	CCNGG	1 cut(s)	363
SfaNI	GCATC	3 cut(s)	226, 274, 576
SinI	GGWCC	1 cut(s)	247
Sse9I	AATT	5 cut(s)	115, 651, 667, 688, 743
SspMI	CTAG	1 cut(s)	835
StyD4I	CCNGG	1 cut(s)	361
StyI	CCWWGG	2 cut(s)	122, 590
TaaI	ACNGT	3 cut(s)	50, 703, 773
TaqI	TCGA	5 cut(s)	24, 30, 45, 240, 776
TaqII	GACCGA	1 cut(s)	235
TasI	AATT	5 cut(s)	115, 651, 667, 688, 743
TatI	WGTACW	1 cut(s)	683
TfiI	GAWTC	2 cut(s)	242, 393
TscAI	CASTG	2 cut(s)	219, 708
TseFI	GTSAC	1 cut(s)	50
TseI	GCWGC	1 cut(s)	432
Tsp45I	GTSAC	1 cut(s)	50
TspDTI	ATGAA	5 cut(s)	289, 390, 644, 672, 810
TspRI	CASTG	2 cut(s)	219, 708
VpaK11BI	GGWCC	1 cut(s)	247
XapI	RAATTY	1 cut(s)	651
XmnI	GAANNNNTTC	1 cut(s)	801
XspI	CTAG	1 cut(s)	835
ZrmI	AGTACT	1 cut(s)	685

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.