Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0016768

Physical Location & Seq

Genomic Coordinates Forward (+)

3457524 .. 3458939

Gene Structure 1416 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g05720.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGGCGGCGGGGATGGTGGTTGTTTTCGACTTTGACAAGACGATCATCAACTGTGACAGCGACAACTGGATCGTGGACGAGTTGGGTGTCAAGGACTTGTTCACTCAGCTCCTCCCTACCATGACTTGGAACCCTCTTATGGATCGGATGATGACGGAGCTTCATGCACGCAGAAAGACAATTCAGGACATTTCGGAGTGCTTAAAGAGGGTTCCAATCCATCCCAACATTGTCTCTGCAATTAAATCAGCCCACGCTTTTGGGTGTGATCTGAGGGTTTTAAGTGATGCAAATGATTTTTTCATAGACGCAATATTGAAGCATCATGGGATAAGGGATTGCTTCTCAGAAATCAAGACAAACCCTAGTTTTATTGATGAACAAGGCAGGCTGAGAATCTTGCCCTTCCATGATTTCATCTCGTCTTCCCATGGCTGCACTCTTTGCCCTCCCAACATGTGCAAGGGTTTAATGATGGGAAAGATCCGAGCTTCTGTTTCAGCAGATGGGAAGAAGCATTTCATCTATGTTGGAGATGGAGCTCCCGATTTTTGCGCGGGTTTGAAGCTTGAAGAAGGAGACTTTCTGTTGCCGAGGAAGAACTATCCAATCTGGGATTTGATTTCTGCCAATCCCTTGCTTAACAAGGCAAAGATTTACGAGTGGAACGAGTGCGATGAGCTCGGGACTATTTTGCTCAACACAGTGAAGGCATTCTTCATTGGAGACAAGTCTGGCAAAGAGAGAAGTAATCATTTGGTTCCAATTGATTGCAAGTCTCAAAGCAGTTCGGTATCTGCCTCTGCCCATGATGCCTTTCAAAATGCCCTCCCAGTTCCGCTTCCTCGCCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004427 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016311 GO:0016462 GO:0016787 GO:0016788 GO:0016791 GO:0016817 GO:0016818 GO:0022607 GO:0042578 GO:0043933 GO:0044085 GO:0044237 GO:0051259 GO:0051262 GO:0052731 GO:0052732 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko00750 ko01100 map00750 map01100

Pfam Domains

Protein Families

Put_Phosphatase

Protein Analysis

285

Amino Acids

31.75

Weight (kDa)

6.19

Isoelectric Point (pI)

36.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Put_Phosphatase	PF06888	5 - 235	2.8e-86	Putative Phosphatase
HAD	PF12710	7 - 114	3.2e-06	haloacid dehalogenase-like hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016768)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g32070
malus_domestica	MD15G1061100.v1.1
prunus_persica	Prupe.1G413800_v2.0.a1
pyrus_communis	pycom15g05720
rosa_chinensis	RchiOBHm_Chr6g0310671
rosa_laevigata	RLG00000010467
rosa_multiflora	Rmu_sc0002546.1_g000002
rosa_roxburghii	Rroxscaffold_7G00158360
rosa_rugosa	Rorug06G0382100
rosa_samantha	Rh6AG496100 Rh6BG505600 Rh6CG511300 Rh6DG497000
rosa_wichuraiana	Rw6G043140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	126
AccII	CGCG	1 cut(s)	557
AciI	CCGC	4 cut(s)	5, 8, 557, 839
AclWI	GGATC	3 cut(s)	77, 150, 478
AfiI	CCNNNNNNNGG	2 cut(s)	126, 139
AflIII	ACRYGT	1 cut(s)	456
AgsI	TTSAA	4 cut(s)	319, 565, 572, 821
AluBI	AGCT	6 cut(s)	109, 160, 491, 542, 568, 682
AluI	AGCT	6 cut(s)	109, 160, 491, 542, 568, 682
Alw21I	GWGCWC	2 cut(s)	544, 684
Alw26I	GTCTC	4 cut(s)	238, 573, 720, 783
AlwI	GGATC	3 cut(s)	77, 150, 478
Ama87I	CYCGRG	1 cut(s)	683
ApeKI	GCWGC	1 cut(s)	435
Asp700I	GAANNNNTTC	2 cut(s)	518, 713
AspLEI	GCGC	1 cut(s)	557
AvaI	CYCGRG	1 cut(s)	683
BanII	GRGCYC	2 cut(s)	544, 684
BbsI	GAAGAC	1 cut(s)	417
Bbv12I	GWGCWC	2 cut(s)	544, 684
BbvI	GCAGC	1 cut(s)	422
BccI	CCATC	5 cut(s)	7, 228, 469, 500, 530
BcoDI	GTCTC	4 cut(s)	238, 573, 720, 783
BfaI	CTAG	1 cut(s)	366
BisI	GCNGC	2 cut(s)	6, 436
BlsI	GCNGC	2 cut(s)	7, 437
BmeT110I	CYCGRG	1 cut(s)	683
BmiI	GGNNCC	3 cut(s)	131, 213, 762
BmrI	ACTGGG	1 cut(s)	827
BmsI	GCATC	3 cut(s)	277, 331, 802
BmuI	ACTGGG	1 cut(s)	827
BpiI	GAAGAC	1 cut(s)	417
BsaJI	CCNNGG	2 cut(s)	430, 593
Bsc4I	CCNNNNNNNGG	2 cut(s)	126, 139
Bse1I	ACTGG	3 cut(s)	71, 833, 850
BseDI	CCNNGG	2 cut(s)	430, 593
BseGI	GGATG	3 cut(s)	18, 153, 220
BseLI	CCNNNNNNNGG	2 cut(s)	126, 139
BseMII	CTCAG	4 cut(s)	119, 263, 360, 383
BseNI	ACTGG	3 cut(s)	71, 833, 850
BseRI	GAGGAG	1 cut(s)	101
BseXI	GCAGC	1 cut(s)	422
BsgI	GTGCAG	1 cut(s)	421
Bsh1236I	CGCG	1 cut(s)	557
BsiHKAI	GWGCWC	2 cut(s)	544, 684
BsiHKCI	CYCGRG	1 cut(s)	683
BslFI	GGGAC	1 cut(s)	700
BslI	CCNNNNNNNGG	2 cut(s)	126, 139
BsmAI	GTCTC	4 cut(s)	238, 573, 720, 783
BsmFI	GGGAC	1 cut(s)	700
BsmI	GAATGC	1 cut(s)	713
BsoBI	CYCGRG	1 cut(s)	683
Bsp1286I	GDGCHC	2 cut(s)	544, 684
Bsp143I	GATC	5 cut(s)	42, 69, 142, 268, 483
Bsp19I	CCATGG	1 cut(s)	430
BspACI	CCGC	4 cut(s)	5, 8, 557, 839
BspCNI	CTCAG	4 cut(s)	118, 264, 359, 384
BspFNI	CGCG	1 cut(s)	557
BspLI	GGNNCC	3 cut(s)	131, 213, 762
BspPI	GGATC	3 cut(s)	77, 150, 478
BsrI	ACTGG	3 cut(s)	71, 833, 850
BssECI	CCNNGG	2 cut(s)	430, 593
BssMI	GATC	5 cut(s)	42, 69, 142, 268, 483
BssT1I	CCWWGG	1 cut(s)	430
Bst4CI	ACNGT	2 cut(s)	53, 706
BstAPI	GCANNNNNTGC	1 cut(s)	444
BstC8I	GCNNGC	2 cut(s)	169, 389
BstDEI	CTNAG	4 cut(s)	105, 272, 346, 392
BstDSI	CCRYGG	1 cut(s)	430
BstF5I	GGATG	3 cut(s)	18, 153, 220
BstFNI	CGCG	1 cut(s)	557
BstHHI	GCGC	1 cut(s)	557
BstKTI	GATC	5 cut(s)	45, 72, 145, 271, 486
BstMAI	GTCTC	4 cut(s)	238, 573, 720, 783
BstMBI	GATC	5 cut(s)	42, 69, 142, 268, 483
BstMWI	GCNNNNNNNGC	2 cut(s)	444, 812
BstNSI	RCATGY	1 cut(s)	460
BstUI	CGCG	1 cut(s)	557
BstV1I	GCAGC	1 cut(s)	422
BstV2I	GAAGAC	1 cut(s)	417
BstX2I	RGATCY	1 cut(s)	483
BstXI	CCANNNNNNTGG	1 cut(s)	260
BstYI	RGATCY	1 cut(s)	483
BtgI	CCRYGG	1 cut(s)	430
BtgZI	GCGATG	1 cut(s)	690
BtsCI	GGATG	3 cut(s)	18, 153, 220
BtsIMutI	CAGTG	1 cut(s)	711
Cac8I	GCNNGC	2 cut(s)	169, 389
CfoI	GCGC	1 cut(s)	557
CseI	GACGC	1 cut(s)	317
CviAII	CATG	7 cut(s)	121, 164, 326, 410, 431, 457, 809
CviJI	RGCY	9 cut(s)	109, 160, 251, 391, 435, 491, 542, 568, 682
CviKI_1	RGCY	9 cut(s)	109, 160, 251, 391, 435, 491, 542, 568, 682
DdeI	CTNAG	4 cut(s)	105, 272, 346, 392
DpnI	GATC	5 cut(s)	44, 71, 144, 270, 485
DpnII	GATC	5 cut(s)	42, 69, 142, 268, 483
Ecl136II	GAGCTC	2 cut(s)	542, 682
Eco130I	CCWWGG	1 cut(s)	430
Eco24I	GRGCYC	2 cut(s)	544, 684
Eco53kI	GAGCTC	2 cut(s)	542, 682
Eco88I	CYCGRG	1 cut(s)	683
EcoICRI	GAGCTC	2 cut(s)	542, 682
EcoT14I	CCWWGG	1 cut(s)	430
EcoT38I	GRGCYC	2 cut(s)	544, 684
ErhI	CCWWGG	1 cut(s)	430
FaeI	CATG	7 cut(s)	124, 167, 329, 413, 434, 460, 812
FalI	AAGNNNNNCTT	2 cut(s)	701, 733
FaqI	GGGAC	1 cut(s)	700
FatI	CATG	7 cut(s)	120, 163, 325, 409, 430, 456, 808
FauI	CCCGC	1 cut(s)	550
Fnu4HI	GCNGC	2 cut(s)	6, 436
FokI	GGATG	3 cut(s)	25, 160, 207
FriOI	GRGCYC	2 cut(s)	544, 684
Fsp4HI	GCNGC	2 cut(s)	6, 436
FspBI	CTAG	1 cut(s)	366
GlaI	GCGC	1 cut(s)	556
GluI	GCNGC	2 cut(s)	6, 436
HgaI	GACGC	1 cut(s)	317
HhaI	GCGC	1 cut(s)	557
Hin1II	CATG	7 cut(s)	124, 167, 329, 413, 434, 460, 812
Hin6I	GCGC	1 cut(s)	555
HinP1I	GCGC	1 cut(s)	555
HindIII	AAGCTT	1 cut(s)	566
HinfI	GANTC	1 cut(s)	396
Hpy166II	GTNNAC	2 cut(s)	76, 102
Hpy188I	TCNGA	5 cut(s)	147, 196, 273, 349, 488
Hpy188III	TCNNGA	4 cut(s)	185, 355, 545, 685
Hpy8I	GTNNAC	2 cut(s)	76, 102
HpyAV	CCTTC	3 cut(s)	415, 569, 703
HpyCH4III	ACNGT	2 cut(s)	53, 706
HpyCH4V	TGCA	6 cut(s)	167, 239, 290, 438, 462, 774
HpyF10VI	GCNNNNNNNGC	2 cut(s)	444, 812
HpyF3I	CTNAG	4 cut(s)	105, 272, 346, 392
Hsp92II	CATG	7 cut(s)	124, 167, 329, 413, 434, 460, 812
HspAI	GCGC	1 cut(s)	555
Kzo9I	GATC	5 cut(s)	42, 69, 142, 268, 483
LmnI	GCTCC	4 cut(s)	114, 157, 539, 547
LpnPI	CCDG	6 cut(s)	52, 170, 373, 598, 720, 846
Lsp1109I	GCAGC	1 cut(s)	422
LweI	GCATC	3 cut(s)	277, 331, 802
MaeI	CTAG	1 cut(s)	366
MaeIII	GTNAC	1 cut(s)	53
MalI	GATC	5 cut(s)	44, 71, 144, 270, 485
MboI	GATC	5 cut(s)	42, 69, 142, 268, 483
MboII	GAAGA	5 cut(s)	417, 523, 584, 610, 709
MfeI	CAATTG	1 cut(s)	765
MflI	RGATCY	1 cut(s)	483
MhlI	GDGCHC	2 cut(s)	544, 684
MluCI	AATT	3 cut(s)	180, 240, 765
MmeI	TCCRAC	1 cut(s)	511
MnlI	CCTC	9 cut(s)	122, 144, 201, 267, 459, 588, 811, 839, 855
MroXI	GAANNNNTTC	2 cut(s)	518, 713
MseI	TTAA	5 cut(s)	203, 243, 281, 470, 642
MunI	CAATTG	1 cut(s)	765
Mva1269I	GAATGC	1 cut(s)	713
MvnI	CGCG	1 cut(s)	557
MwoI	GCNNNNNNNGC	2 cut(s)	444, 812
NcoI	CCATGG	1 cut(s)	430
NdeII	GATC	5 cut(s)	42, 69, 142, 268, 483
NlaIII	CATG	7 cut(s)	124, 167, 329, 413, 434, 460, 812
NlaIV	GGNNCC	3 cut(s)	131, 213, 762
NmeAIII	GCCGAG	1 cut(s)	618
NmuCI	GTSAC	1 cut(s)	53
NspI	RCATGY	1 cut(s)	460
PciI	ACATGT	1 cut(s)	456
PcsI	WCGNNNNNNNCGW	1 cut(s)	666
PctI	GAATGC	1 cut(s)	713
PdmI	GAANNNNTTC	2 cut(s)	518, 713
PfeI	GAWTC	1 cut(s)	396
PflMI	CCANNNNNTGG	1 cut(s)	126
PkrI	GCNGC	2 cut(s)	7, 437
PscI	ACATGT	1 cut(s)	456
Psp124BI	GAGCTC	2 cut(s)	544, 684
PspN4I	GGNNCC	3 cut(s)	131, 213, 762
PsuI	RGATCY	1 cut(s)	483
SacI	GAGCTC	2 cut(s)	544, 684
SaqAI	TTAA	5 cut(s)	203, 243, 281, 470, 642
SatI	GCNGC	2 cut(s)	6, 436
Sau3AI	GATC	5 cut(s)	42, 69, 142, 268, 483
SduI	GDGCHC	2 cut(s)	544, 684
SetI	ASST	6 cut(s)	111, 162, 493, 544, 570, 684
SfaNI	GCATC	3 cut(s)	277, 331, 802
Sse9I	AATT	3 cut(s)	180, 240, 765
SsiI	CCGC	4 cut(s)	5, 8, 557, 839
SspI	AATATT	1 cut(s)	315
SspMI	CTAG	1 cut(s)	366
SstI	GAGCTC	2 cut(s)	544, 684
StyI	CCWWGG	1 cut(s)	430
TaaI	ACNGT	2 cut(s)	53, 706
TaqI	TCGA	1 cut(s)	27
TasI	AATT	3 cut(s)	180, 240, 765
TauI	GCSGC	1 cut(s)	8
TfiI	GAWTC	1 cut(s)	396
Tru1I	TTAA	5 cut(s)	203, 243, 281, 470, 642
Tru9I	TTAA	5 cut(s)	203, 243, 281, 470, 642
TscAI	CASTG	1 cut(s)	711
TseFI	GTSAC	1 cut(s)	53
TseI	GCWGC	1 cut(s)	435
Tsp45I	GTSAC	1 cut(s)	53
TspDTI	ATGAA	6 cut(s)	152, 292, 393, 406, 511, 709
TspGWI	ACGGA	1 cut(s)	170
TspRI	CASTG	1 cut(s)	711
Van91I	CCANNNNNTGG	1 cut(s)	126
XceI	RCATGY	1 cut(s)	460
XmnI	GAANNNNTTC	2 cut(s)	518, 713
XspI	CTAG	1 cut(s)	366

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.