Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0016768

Physical Location & Seq

Genomic Coordinates Forward (+)

1841627 .. 1843041

Gene Structure 1415 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00158360.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGGCGGGGTTGGTAGTCATTTTTGATTTCGACAACACGATCATCGACTGTGACAGCGACAACTGGGTTGTGGAAGAGTTGGGTATCAACCACTTGTTTACTCAGCTCCTCCATACTTTGCCGTGGAACTCTATTATGGATAGGATGATGACAGAGCTTCATAATAGGGGAAAGACGATTGAAGACGTTGAAAAGTGTTTGAAGAAGGTTCCACTGCATCCCAGCATTGCCTCCGCAATCGAATCAGCCCATGCTTTTGGGTGTGATCTGAGGGTTGTGAGTGATGCAAATGTGTTTTTCATTGAGACAATCTTGAAACATCATGGCCTACTAGACTATTTTTCGGAAATCAACACCAACCCTAGCCTTGTTGATGAACAAGGCAGGCTCAGAATCTTGCCCTATCATGATTTCAACTCATCACCTCATGGCTGCAATATATGCCCTTCCAATATGTGCAAGGGTCTGGTGATGGAGAAGATCCGAGCTTTGGTTTCGGCAGATGGAAACAAGCAGTTGGTCTATGTTGGGGATGGAGCTCCTGATTTTTGCGCAGGCTTGAAGCTTGAAGAAGGAGATGTCATGATGCCAAGGAAGGACTTTCCTATCTGTGATTTAATATCTGCCAACCCATTGCTTACCAAGGCAAAAATTCATGAATGGAGCGATTGGGAGCAGCTTGGTGCTAATTTGCTAAGCACAGTGAACAATGCCCTTATTGATGAGTCTAGCAATACGAGAACTGATCAATTGGTTCCACTCGACTGCAAGTACCAAAACACTTTGATATCTGCTATTGCCCATGAAGCCCTTCAAAAGCTCTCCCAGTTTCACCTCCCCACTGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001501 GO:0001503 GO:0001958 GO:0003674 GO:0003824 GO:0004427 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006629 GO:0006644 GO:0006646 GO:0006650 GO:0006656 GO:0006793 GO:0006796 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009653 GO:0009887 GO:0009888 GO:0009987 GO:0016043 GO:0016311 GO:0016462 GO:0016787 GO:0016788 GO:0016791 GO:0016817 GO:0016818 GO:0019637 GO:0021700 GO:0022607 GO:0030282 GO:0031012 GO:0031214 GO:0032501 GO:0032502 GO:0035630 GO:0036075 GO:0042578 GO:0043226 GO:0043227 GO:0043230 GO:0043931 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0045017 GO:0046337 GO:0046470 GO:0046474 GO:0046486 GO:0048513 GO:0048705 GO:0048731 GO:0048799 GO:0048856 GO:0051259 GO:0051262 GO:0052731 GO:0052732 GO:0060348 GO:0060349 GO:0060350 GO:0065003 GO:0065010 GO:0070977 GO:0071695 GO:0071704 GO:0071840 GO:0090407 GO:0097164 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00564 ko00750 ko01100 map00564 map00750 map01100

Pfam Domains

Protein Families

Put_Phosphatase

Protein Analysis

282

Amino Acids

31.47

Weight (kDa)

5.05

Isoelectric Point (pI)

35.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Put_Phosphatase	PF06888	5 - 234	1.2e-86	Putative Phosphatase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0016768)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g32070
malus_domestica	MD15G1061100.v1.1
prunus_persica	Prupe.1G413800_v2.0.a1
pyrus_communis	pycom15g05720
rosa_chinensis	RchiOBHm_Chr6g0310671
rosa_laevigata	RLG00000010467
rosa_multiflora	Rmu_sc0002546.1_g000002
rosa_roxburghii	Rroxscaffold_7G00158360
rosa_rugosa	Rorug06G0382100
rosa_samantha	Rh6AG496100 Rh6BG505600 Rh6CG511300 Rh6DG497000
rosa_wichuraiana	Rw6G043140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	553
AciI	CCGC	2 cut(s)	5, 234
AclWI	GGATC	1 cut(s)	475
AcsI	RAATTY	1 cut(s)	651
AfaI	GTAC	1 cut(s)	773
AfiI	CCNNNNNNNGG	1 cut(s)	490
AgsI	TTSAA	8 cut(s)	182, 191, 202, 316, 415, 562, 569, 815
AluBI	AGCT	7 cut(s)	106, 157, 488, 539, 565, 679, 820
AluI	AGCT	7 cut(s)	106, 157, 488, 539, 565, 679, 820
Alw21I	GWGCWC	1 cut(s)	541
Alw26I	GTCTC	1 cut(s)	299
AlwI	GGATC	1 cut(s)	475
AoxI	GGCC	1 cut(s)	325
ApeKI	GCWGC	2 cut(s)	432, 676
ApoI	RAATTY	1 cut(s)	651
Asp700I	GAANNNNTTC	1 cut(s)	810
AspLEI	GCGC	1 cut(s)	554
AsuHPI	GGTGA	3 cut(s)	414, 481, 824
BanII	GRGCYC	1 cut(s)	541
BbsI	GAAGAC	1 cut(s)	189
Bbv12I	GWGCWC	1 cut(s)	541
BbvI	GCAGC	2 cut(s)	419, 688
BccI	CCATC	3 cut(s)	466, 497, 527
BceAI	ACGGC	1 cut(s)	106
BclI	TGATCA	1 cut(s)	745
BcoDI	GTCTC	1 cut(s)	299
BfaI	CTAG	3 cut(s)	332, 363, 729
BisI	GCNGC	2 cut(s)	433, 677
BlpI	GCTNAGC	1 cut(s)	695
BlsI	GCNGC	2 cut(s)	434, 678
BmiI	GGNNCC	2 cut(s)	210, 756
BmrI	ACTGGG	2 cut(s)	73, 820
BmsI	GCATC	3 cut(s)	226, 274, 576
BmuI	ACTGGG	2 cut(s)	73, 820
BpiI	GAAGAC	1 cut(s)	189
Bpu1102I	GCTNAGC	1 cut(s)	695
BsaJI	CCNNGG	3 cut(s)	122, 590, 642
Bsc4I	CCNNNNNNNGG	1 cut(s)	490
Bse1I	ACTGG	3 cut(s)	68, 826, 847
Bse3DI	GCAATG	2 cut(s)	225, 632
BseDI	CCNNGG	3 cut(s)	122, 590, 642
BseGI	GGATG	3 cut(s)	150, 217, 538
BseLI	CCNNNNNNNGG	1 cut(s)	490
BseMI	GCAATG	2 cut(s)	225, 632
BseMII	CTCAG	3 cut(s)	116, 260, 403
BseNI	ACTGG	3 cut(s)	68, 826, 847
BseRI	GAGGAG	1 cut(s)	98
BseXI	GCAGC	2 cut(s)	419, 688
BseYI	CCCAGC	1 cut(s)	221
BshFI	GGCC	1 cut(s)	327
BsiHKAI	GWGCWC	1 cut(s)	541
BslI	CCNNNNNNNGG	1 cut(s)	490
BsmAI	GTCTC	1 cut(s)	299
BsnI	GGCC	1 cut(s)	327
Bsp1286I	GDGCHC	1 cut(s)	541
Bsp143I	GATC	4 cut(s)	39, 265, 480, 745
Bsp1720I	GCTNAGC	1 cut(s)	695
BspACI	CCGC	2 cut(s)	5, 234
BspANI	GGCC	1 cut(s)	327
BspCNI	CTCAG	3 cut(s)	115, 261, 402
BspHI	TCATGA	3 cut(s)	406, 582, 655
BspLI	GGNNCC	2 cut(s)	210, 756
BspPI	GGATC	1 cut(s)	475
BsrDI	GCAATG	2 cut(s)	225, 632
BsrI	ACTGG	3 cut(s)	68, 826, 847
BssECI	CCNNGG	3 cut(s)	122, 590, 642
BssMI	GATC	4 cut(s)	39, 265, 480, 745
BssT1I	CCWWGG	2 cut(s)	590, 642
Bst4CI	ACNGT	2 cut(s)	50, 703
Bst6I	CTCTTC	1 cut(s)	69
BstAPI	GCANNNNNTGC	1 cut(s)	441
BstC8I	GCNNGC	2 cut(s)	386, 556
BstDEI	CTNAG	4 cut(s)	102, 269, 389, 695
BstDSI	CCRYGG	1 cut(s)	122
BstF5I	GGATG	3 cut(s)	150, 217, 538
BstHHI	GCGC	1 cut(s)	554
BstKTI	GATC	4 cut(s)	42, 268, 483, 748
BstMAI	GTCTC	1 cut(s)	299
BstMBI	GATC	4 cut(s)	39, 265, 480, 745
BstMWI	GCNNNNNNNGC	2 cut(s)	441, 806
BstV1I	GCAGC	2 cut(s)	419, 688
BstV2I	GAAGAC	1 cut(s)	189
BstX2I	RGATCY	1 cut(s)	480
BstXI	CCANNNNNNTGG	1 cut(s)	257
BstYI	RGATCY	1 cut(s)	480
BsuRI	GGCC	1 cut(s)	327
BtgI	CCRYGG	1 cut(s)	122
BtsCI	GGATG	3 cut(s)	150, 217, 538
BtsI	GCAGTG	1 cut(s)	212
BtsIMutI	CAGTG	3 cut(s)	212, 708, 840
Cac8I	GCNNGC	2 cut(s)	386, 556
CciI	TCATGA	3 cut(s)	406, 582, 655
CfoI	GCGC	1 cut(s)	554
Csp6I	GTAC	1 cut(s)	772
CviAII	CATG	7 cut(s)	251, 323, 407, 428, 583, 656, 803
CviQI	GTAC	1 cut(s)	772
DdeI	CTNAG	4 cut(s)	102, 269, 389, 695
DpnI	GATC	4 cut(s)	41, 267, 482, 747
DpnII	GATC	4 cut(s)	39, 265, 480, 745
Eam1104I	CTCTTC	1 cut(s)	69
EarI	CTCTTC	1 cut(s)	69
Ecl136II	GAGCTC	1 cut(s)	539
Eco130I	CCWWGG	2 cut(s)	590, 642
Eco24I	GRGCYC	1 cut(s)	541
Eco32I	GATATC	1 cut(s)	789
Eco53kI	GAGCTC	1 cut(s)	539
EcoICRI	GAGCTC	1 cut(s)	539
EcoRV	GATATC	1 cut(s)	789
EcoT14I	CCWWGG	2 cut(s)	590, 642
EcoT38I	GRGCYC	1 cut(s)	541
ErhI	CCWWGG	2 cut(s)	590, 642
FaeI	CATG	7 cut(s)	254, 326, 410, 431, 586, 659, 806
FatI	CATG	7 cut(s)	250, 322, 406, 427, 582, 655, 802
FbaI	TGATCA	1 cut(s)	745
Fnu4HI	GCNGC	2 cut(s)	433, 677
FokI	GGATG	3 cut(s)	157, 204, 545
FriOI	GRGCYC	1 cut(s)	541
Fsp4HI	GCNGC	2 cut(s)	433, 677
FspBI	CTAG	3 cut(s)	332, 363, 729
FspI	TGCGCA	1 cut(s)	553
GlaI	GCGC	1 cut(s)	553
GluI	GCNGC	2 cut(s)	433, 677
GsaI	CCCAGC	1 cut(s)	225
HaeIII	GGCC	1 cut(s)	327
HhaI	GCGC	1 cut(s)	554
Hin1II	CATG	7 cut(s)	254, 326, 410, 431, 586, 659, 806
Hin6I	GCGC	1 cut(s)	552
HinP1I	GCGC	1 cut(s)	552
HindIII	AAGCTT	1 cut(s)	563
HinfI	GANTC	3 cut(s)	242, 393, 725
HphI	GGTGA	3 cut(s)	414, 481, 824
Hpy166II	GTNNAC	2 cut(s)	99, 706
Hpy188I	TCNGA	4 cut(s)	270, 346, 392, 485
Hpy188III	TCNNGA	5 cut(s)	313, 407, 542, 583, 656
Hpy8I	GTNNAC	2 cut(s)	99, 706
HpyAV	CCTTC	5 cut(s)	199, 456, 566, 589, 821
HpyCH4III	ACNGT	2 cut(s)	50, 703
HpyCH4IV	ACGT	1 cut(s)	186
HpyCH4V	TGCA	5 cut(s)	217, 287, 435, 459, 768
HpyF10VI	GCNNNNNNNGC	2 cut(s)	441, 806
HpyF3I	CTNAG	4 cut(s)	102, 269, 389, 695
HpySE526I	ACGT	1 cut(s)	186
Hsp92II	CATG	7 cut(s)	254, 326, 410, 431, 586, 659, 806
HspAI	GCGC	1 cut(s)	552
Ksp22I	TGATCA	1 cut(s)	745
Kzo9I	GATC	4 cut(s)	39, 265, 480, 745
LmnI	GCTCC	5 cut(s)	111, 536, 544, 663, 673
LpnPI	CCDG	8 cut(s)	49, 235, 370, 452, 540, 555, 828, 839
Lsp1109I	GCAGC	2 cut(s)	419, 688
LweI	GCATC	3 cut(s)	226, 274, 576
MaeI	CTAG	3 cut(s)	332, 363, 729
MaeII	ACGT	1 cut(s)	186
MaeIII	GTNAC	1 cut(s)	50
MalI	GATC	4 cut(s)	41, 267, 482, 747
MboI	GATC	4 cut(s)	39, 265, 480, 745
MboII	GAAGA	5 cut(s)	86, 194, 214, 490, 581
MfeI	CAATTG	1 cut(s)	749
MflI	RGATCY	1 cut(s)	480
MhlI	GDGCHC	1 cut(s)	541
MluCI	AATT	3 cut(s)	651, 688, 749
MlyI	GAGTC	1 cut(s)	734
MnlI	CCTC	5 cut(s)	119, 241, 264, 435, 845
MroXI	GAANNNNTTC	1 cut(s)	810
MseI	TTAA	1 cut(s)	617
MunI	CAATTG	1 cut(s)	749
MwoI	GCNNNNNNNGC	2 cut(s)	441, 806
NdeII	GATC	4 cut(s)	39, 265, 480, 745
NlaIII	CATG	7 cut(s)	254, 326, 410, 431, 586, 659, 806
NlaIV	GGNNCC	2 cut(s)	210, 756
NmuCI	GTSAC	1 cut(s)	50
NsbI	TGCGCA	1 cut(s)	553
PagI	TCATGA	3 cut(s)	406, 582, 655
PdmI	GAANNNNTTC	1 cut(s)	810
PfeI	GAWTC	2 cut(s)	242, 393
PkrI	GCNGC	2 cut(s)	434, 678
PleI	GAGTC	1 cut(s)	733
PpsI	GAGTC	1 cut(s)	733
Psp124BI	GAGCTC	1 cut(s)	541
PspFI	CCCAGC	1 cut(s)	221
PspN4I	GGNNCC	2 cut(s)	210, 756
PsuI	RGATCY	1 cut(s)	480
RsaI	GTAC	1 cut(s)	773
RsaNI	GTAC	1 cut(s)	772
SacI	GAGCTC	1 cut(s)	541
SaqAI	TTAA	1 cut(s)	617
SatI	GCNGC	2 cut(s)	433, 677
Sau3AI	GATC	4 cut(s)	39, 265, 480, 745
SchI	GAGTC	1 cut(s)	734
SduI	GDGCHC	1 cut(s)	541
SfaNI	GCATC	3 cut(s)	226, 274, 576
Sse9I	AATT	3 cut(s)	651, 688, 749
SsiI	CCGC	2 cut(s)	5, 234
SspMI	CTAG	3 cut(s)	332, 363, 729
SstI	GAGCTC	1 cut(s)	541
StyI	CCWWGG	2 cut(s)	590, 642
TaaI	ACNGT	2 cut(s)	50, 703
TaiI	ACGT	1 cut(s)	189
TaqI	TCGA	4 cut(s)	30, 45, 240, 762
TasI	AATT	3 cut(s)	651, 688, 749
TfiI	GAWTC	2 cut(s)	242, 393
Tru1I	TTAA	1 cut(s)	617
Tru9I	TTAA	1 cut(s)	617
TscAI	CASTG	3 cut(s)	219, 708, 847
TseFI	GTSAC	1 cut(s)	50
TseI	GCWGC	2 cut(s)	432, 676
Tsp45I	GTSAC	1 cut(s)	50
TspDTI	ATGAA	6 cut(s)	149, 289, 390, 644, 672, 819
TspRI	CASTG	3 cut(s)	219, 708, 847
XapI	RAATTY	1 cut(s)	651
XmnI	GAANNNNTTC	1 cut(s)	810
XspI	CTAG	3 cut(s)	332, 363, 729

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.