FvH4_2g35481

ultraviolet-B receptor

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Forward (+)
26148986 .. 26150053
1068 bp
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UTR
Exon/CDS
Intron
FvH4_2g35481.t1

Sequence Viewer

Length: 303 bp
ATGGAGGACATCGATGACGTCAGCGGCTCCCCGACCAATGGCGGCAACTTGGCTGGGAAAGTGGTGGTGGTGGCTGCCGGAGAAGCTCACACTCTGGCTCTCACAGGTGATGGGTATGTGTATTCATGGGGGAGAGGCATGTTCGGGCGTCTCGGAACCGGGTCGGAGTCCGACCAGCTATTTCCGGTTCGGGTCAAATTGAAACCGGAAAAGAAGCACAAATTTGTGGGAGTGGCTGCTGGTGCTTACCACAGTCTTGCTTTGGCTGGTCAGTTTTGTACTTTGAGCAGTAACAAGTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

101

Amino Acids

10.46

Weight (kDa)

7.88

Isoelectric Point (pI)

18.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WD40_RLD PF25390 14 - 89 8.8e-19 RCC1-like domain
RCC1_2 PF13540 21 - 46 2.2e-08 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 37 - 88 2.6e-16 Regulator of chromosome condensation (RCC1) repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0019675)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g35481
malus_domestica MD15G1092900.v1.1
prunus_persica Prupe.1G447800_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0306321 RchiOBHm_Chr6g0306381
rosa_rugosa Rorug06G0352000
rosa_samantha Rh6DG462000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 21
AciI CCGC 2 cut(s) 24, 42
AcsI RAATTY 1 cut(s) 221
AcyI GRCGYC 2 cut(s) 18, 148
AfaI GTAC 1 cut(s) 280
AfiI CCNNNNNNNGG 1 cut(s) 38
AgsI TTSAA 1 cut(s) 202
AluBI AGCT 2 cut(s) 86, 178
AluI AGCT 2 cut(s) 86, 178
Alw26I GTCTC 1 cut(s) 155
ApeKI GCWGC 2 cut(s) 74, 236
ApoI RAATTY 1 cut(s) 221
AsuC2I CCSGG 1 cut(s) 160
AsuHPI GGTGA 1 cut(s) 119
BbvI GCAGC 2 cut(s) 61, 223
BccI CCATC 1 cut(s) 104
BcnI CCSGG 1 cut(s) 160
BcoDI GTCTC 1 cut(s) 155
BisI GCNGC 4 cut(s) 25, 43, 75, 237
BlsI GCNGC 4 cut(s) 26, 44, 76, 238
Bme1390I CCNGG 1 cut(s) 160
BmiI GGNNCC 2 cut(s) 28, 157
BmrFI CCNGG 1 cut(s) 160
BpuMI CCSGG 1 cut(s) 160
Bsa29I ATCGAT 1 cut(s) 12
BsaHI GRCGYC 2 cut(s) 18, 148
BsaWI WCCGGW 2 cut(s) 184, 205
Bsc4I CCNNNNNNNGG 1 cut(s) 38
BseCI ATCGAT 1 cut(s) 12
BseLI CCNNNNNNNGG 1 cut(s) 38
BseXI GCAGC 2 cut(s) 61, 223
BseYI CCCAGC 1 cut(s) 53
BshVI ATCGAT 1 cut(s) 12
BsiSI CCGG 4 cut(s) 78, 159, 185, 206
BslI CCNNNNNNNGG 1 cut(s) 38
BsmAI GTCTC 1 cut(s) 155
BsmBI CGTCTC 1 cut(s) 155
BspACI CCGC 2 cut(s) 24, 42
BspDI ATCGAT 1 cut(s) 12
BspLI GGNNCC 2 cut(s) 28, 157
BssNI GRCGYC 2 cut(s) 18, 148
Bst4CI ACNGT 1 cut(s) 254
BstACI GRCGYC 2 cut(s) 18, 148
BstMAI GTCTC 1 cut(s) 155
BstMWI GCNNNNNNNGC 2 cut(s) 83, 242
BstNSI RCATGY 1 cut(s) 142
BstSCI CCNGG 1 cut(s) 158
BstV1I GCAGC 2 cut(s) 61, 223
Bsu15I ATCGAT 1 cut(s) 12
BsuTUI ATCGAT 1 cut(s) 12
ClaI ATCGAT 1 cut(s) 12
CseI GACGC 1 cut(s) 137
Csp6I GTAC 1 cut(s) 279
CviAII CATG 2 cut(s) 126, 139
CviJI RGCY 8 cut(s) 27, 53, 74, 86, 98, 178, 236, 266
CviKI_1 RGCY 8 cut(s) 27, 53, 74, 86, 98, 178, 236, 266
CviQI GTAC 1 cut(s) 279
Esp3I CGTCTC 1 cut(s) 155
FaeI CATG 2 cut(s) 129, 142
FaiI YATR 3 cut(s) 117, 127, 140
FatI CATG 2 cut(s) 125, 138
Fnu4HI GCNGC 4 cut(s) 25, 43, 75, 237
Fsp4HI GCNGC 4 cut(s) 25, 43, 75, 237
GluI GCNGC 4 cut(s) 25, 43, 75, 237
GsaI CCCAGC 1 cut(s) 57
HapII CCGG 4 cut(s) 78, 159, 185, 206
HgaI GACGC 1 cut(s) 137
Hin1I GRCGYC 2 cut(s) 18, 148
Hin1II CATG 2 cut(s) 129, 142
HinfI GANTC 1 cut(s) 167
HpaII CCGG 4 cut(s) 78, 159, 185, 206
HphI GGTGA 1 cut(s) 119
Hpy188I TCNGA 3 cut(s) 155, 166, 172
HpyCH4III ACNGT 1 cut(s) 254
HpyCH4IV ACGT 1 cut(s) 18
HpyF10VI GCNNNNNNNGC 2 cut(s) 83, 242
HpySE526I ACGT 1 cut(s) 18
Hsp92I GRCGYC 2 cut(s) 18, 148
Hsp92II CATG 2 cut(s) 129, 142
LmnI GCTCC 1 cut(s) 32
Lsp1109I GCAGC 2 cut(s) 61, 223
MaeII ACGT 1 cut(s) 18
MaeIII GTNAC 1 cut(s) 290
MluCI AATT 2 cut(s) 197, 221
MlyI GAGTC 1 cut(s) 176
MmeI TCCRAC 2 cut(s) 144, 195
MnlI CCTC 1 cut(s) 128
MseI TTAA 1 cut(s) 301
MspA1I CMGCKG 1 cut(s) 24
MspI CCGG 4 cut(s) 78, 159, 185, 206
MspR9I CCNGG 1 cut(s) 160
MwoI GCNNNNNNNGC 2 cut(s) 83, 242
NciI CCSGG 1 cut(s) 160
NlaIII CATG 2 cut(s) 129, 142
NlaIV GGNNCC 2 cut(s) 28, 157
NspI RCATGY 1 cut(s) 142
PkrI GCNGC 4 cut(s) 26, 44, 76, 238
PleI GAGTC 1 cut(s) 175
PpsI GAGTC 1 cut(s) 175
PspFI CCCAGC 1 cut(s) 53
PspN4I GGNNCC 2 cut(s) 28, 157
RsaI GTAC 1 cut(s) 280
RsaNI GTAC 1 cut(s) 279
SaqAI TTAA 1 cut(s) 301
SatI GCNGC 4 cut(s) 25, 43, 75, 237
SchI GAGTC 1 cut(s) 176
ScrFI CCNGG 1 cut(s) 160
SetI ASST 4 cut(s) 21, 88, 109, 180
Sse9I AATT 2 cut(s) 197, 221
SsiI CCGC 2 cut(s) 24, 42
StyD4I CCNGG 1 cut(s) 158
TaaI ACNGT 1 cut(s) 254
TaiI ACGT 1 cut(s) 21
TaqI TCGA 1 cut(s) 12
TasI AATT 2 cut(s) 197, 221
TatI WGTACW 1 cut(s) 278
TauI GCSGC 2 cut(s) 27, 45
Tru1I TTAA 1 cut(s) 301
Tru9I TTAA 1 cut(s) 301
TseI GCWGC 2 cut(s) 74, 236
TspDTI ATGAA 1 cut(s) 114
XapI RAATTY 1 cut(s) 221
XceI RCATGY 1 cut(s) 142
ZraI GACGTC 1 cut(s) 19
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.