Prupe.1G447800_v2.0.a1

ultraviolet-B receptor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0019675
Physical Location & Seq
Forward (+)
37835925 .. 37836445
521 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G447800.1

Sequence Viewer

Length: 306 bp
ATGGACGAGGAAAGCGCCACTCTTCCTAATGGCGGCAGCTTGTCTCGCAAAGTGGTGACAGTGGCTGCCGGAGAAGCCCACACTCTGGCTCTCACAGGGGATGGCTTTGTGTATTCATGGGGAAGAGGCATGTTTGGGCGTCTTGGGACTGGTGCCGAGGCCGACGAGCTCTTCCCAGTTCGAATCAAATTTAATGATCCACGTTCTGCAGAAGAAAGGAGGCTCAAGCTTGTGGGAGTTGCCGCTGGTTCTTACCACAGTCTTGCTCTTGCTGAAGTTTTGGCAGATTTCTGTGGCAGACTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RCC1

Protein Analysis

102

Amino Acids

10.71

Weight (kDa)

5.62

Isoelectric Point (pI)

20.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019675)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g35481
malus_domestica MD15G1092900.v1.1
prunus_persica Prupe.1G447800_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0306321 RchiOBHm_Chr6g0306381
rosa_rugosa Rorug06G0352000
rosa_samantha Rh6DG462000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 152
AccB7I CCANNNNNTGG 1 cut(s) 85
AciI CCGC 2 cut(s) 33, 243
AclWI GGATC 1 cut(s) 191
AcsI RAATTY 1 cut(s) 188
AcuI CTGAAG 1 cut(s) 294
AcyI GRCGYC 1 cut(s) 139
AfiI CCNNNNNNNGG 2 cut(s) 32, 85
AluBI AGCT 3 cut(s) 39, 169, 229
AluI AGCT 3 cut(s) 39, 169, 229
Alw21I GWGCWC 1 cut(s) 171
Alw26I GTCTC 1 cut(s) 48
AlwI GGATC 1 cut(s) 191
AlwNI CAGNNNCTG 1 cut(s) 65
AoxI GGCC 1 cut(s) 159
ApeKI GCWGC 2 cut(s) 36, 65
ApoI RAATTY 1 cut(s) 188
AspLEI GCGC 1 cut(s) 17
AsuHPI GGTGA 1 cut(s) 67
AsuII TTCGAA 1 cut(s) 181
BanI GGYRCC 1 cut(s) 152
BanII GRGCYC 1 cut(s) 171
Bbv12I GWGCWC 1 cut(s) 171
BbvI GCAGC 2 cut(s) 48, 52
BccI CCATC 1 cut(s) 95
BcoDI GTCTC 1 cut(s) 48
BfmI CTRYAG 1 cut(s) 207
BfoI RGCGCY 1 cut(s) 18
BisI GCNGC 4 cut(s) 34, 37, 66, 243
BlsI GCNGC 4 cut(s) 35, 38, 67, 244
BmiI GGNNCC 1 cut(s) 154
BmrI ACTGGG 1 cut(s) 170
BmuI ACTGGG 1 cut(s) 170
Bpu14I TTCGAA 1 cut(s) 181
BpuEI CTTGAG 1 cut(s) 209
BsaHI GRCGYC 1 cut(s) 139
BsaJI CCNNGG 1 cut(s) 156
Bsc4I CCNNNNNNNGG 2 cut(s) 32, 85
Bse1I ACTGG 2 cut(s) 154, 176
BseDI CCNNGG 1 cut(s) 156
BseGI GGATG 1 cut(s) 106
BseLI CCNNNNNNNGG 2 cut(s) 32, 85
BseNI ACTGG 2 cut(s) 154, 176
BseXI GCAGC 2 cut(s) 48, 52
BshFI GGCC 1 cut(s) 161
BshNI GGYRCC 1 cut(s) 152
BsiHKAI GWGCWC 1 cut(s) 171
BsiSI CCGG 1 cut(s) 69
BslFI GGGAC 1 cut(s) 160
BslI CCNNNNNNNGG 2 cut(s) 32, 85
BsmAI GTCTC 1 cut(s) 48
BsmFI GGGAC 1 cut(s) 160
BsnI GGCC 1 cut(s) 161
Bsp119I TTCGAA 1 cut(s) 181
Bsp1286I GDGCHC 1 cut(s) 171
Bsp143I GATC 1 cut(s) 196
BspACI CCGC 2 cut(s) 33, 243
BspANI GGCC 1 cut(s) 161
BspLI GGNNCC 1 cut(s) 154
BspMAI CTGCAG 1 cut(s) 211
BspPI GGATC 1 cut(s) 191
BspQI GCTCTTC 1 cut(s) 176
BspT104I TTCGAA 1 cut(s) 181
BspT107I GGYRCC 1 cut(s) 152
BsrI ACTGG 2 cut(s) 154, 176
BssECI CCNNGG 1 cut(s) 156
BssMI GATC 1 cut(s) 196
BssNI GRCGYC 1 cut(s) 139
Bst4CI ACNGT 2 cut(s) 61, 260
Bst6I CTCTTC 3 cut(s) 27, 118, 176
BstACI GRCGYC 1 cut(s) 139
BstBI TTCGAA 1 cut(s) 181
BstF5I GGATG 1 cut(s) 106
BstH2I RGCGCY 1 cut(s) 18
BstHHI GCGC 1 cut(s) 17
BstKTI GATC 1 cut(s) 199
BstMAI GTCTC 1 cut(s) 48
BstMBI GATC 1 cut(s) 196
BstMWI GCNNNNNNNGC 2 cut(s) 45, 74
BstNSI RCATGY 1 cut(s) 133
BstSFI CTRYAG 1 cut(s) 207
BstV1I GCAGC 2 cut(s) 48, 52
BsuRI GGCC 1 cut(s) 161
BtsCI GGATG 1 cut(s) 106
BtsIMutI CAGTG 1 cut(s) 66
CaiI CAGNNNCTG 1 cut(s) 65
CfoI GCGC 1 cut(s) 17
CseI GACGC 1 cut(s) 128
CviAII CATG 2 cut(s) 117, 130
CviJI RGCY 9 cut(s) 39, 65, 77, 89, 105, 161, 169, 223, 229
CviKI_1 RGCY 9 cut(s) 39, 65, 77, 89, 105, 161, 169, 223, 229
DpnI GATC 1 cut(s) 198
DpnII GATC 1 cut(s) 196
Eam1104I CTCTTC 3 cut(s) 27, 118, 176
EarI CTCTTC 3 cut(s) 27, 118, 176
Ecl136II GAGCTC 1 cut(s) 169
Eco24I GRGCYC 1 cut(s) 171
Eco53kI GAGCTC 1 cut(s) 169
Eco57I CTGAAG 1 cut(s) 294
EcoICRI GAGCTC 1 cut(s) 169
EcoT38I GRGCYC 1 cut(s) 171
FaeI CATG 2 cut(s) 120, 133
FaiI YATR 2 cut(s) 118, 131
FaqI GGGAC 1 cut(s) 160
FatI CATG 2 cut(s) 116, 129
Fnu4HI GCNGC 4 cut(s) 34, 37, 66, 243
FokI GGATG 1 cut(s) 113
FriOI GRGCYC 1 cut(s) 171
Fsp4HI GCNGC 4 cut(s) 34, 37, 66, 243
GlaI GCGC 1 cut(s) 16
GluI GCNGC 4 cut(s) 34, 37, 66, 243
HaeII RGCGCY 1 cut(s) 18
HaeIII GGCC 1 cut(s) 161
HapII CCGG 1 cut(s) 69
HgaI GACGC 1 cut(s) 128
HhaI GCGC 1 cut(s) 17
Hin1I GRCGYC 1 cut(s) 139
Hin1II CATG 2 cut(s) 120, 133
Hin6I GCGC 1 cut(s) 15
HinP1I GCGC 1 cut(s) 15
HindIII AAGCTT 1 cut(s) 227
HinfI GANTC 1 cut(s) 183
HpaII CCGG 1 cut(s) 69
HphI GGTGA 1 cut(s) 67
Hpy99I CGWCG 1 cut(s) 167
HpyCH4III ACNGT 2 cut(s) 61, 260
HpyCH4IV ACGT 1 cut(s) 202
HpyCH4V TGCA 1 cut(s) 209
HpyF10VI GCNNNNNNNGC 2 cut(s) 45, 74
HpySE526I ACGT 1 cut(s) 202
Hsp92I GRCGYC 1 cut(s) 139
Hsp92II CATG 2 cut(s) 120, 133
HspAI GCGC 1 cut(s) 15
Kzo9I GATC 1 cut(s) 196
LguI GCTCTTC 1 cut(s) 176
LpnPI CCDG 6 cut(s) 71, 81, 82, 135, 189, 231
Lsp1109I GCAGC 2 cut(s) 48, 52
MaeII ACGT 1 cut(s) 202
MaeIII GTNAC 1 cut(s) 55
MalI GATC 1 cut(s) 198
MboI GATC 1 cut(s) 196
MboII GAAGA 4 cut(s) 14, 135, 163, 224
MhlI GDGCHC 1 cut(s) 171
MluCI AATT 1 cut(s) 188
MnlI CCTC 3 cut(s) 119, 151, 213
MseI TTAA 1 cut(s) 192
MspA1I CMGCKG 1 cut(s) 245
MspI CCGG 1 cut(s) 69
MwoI GCNNNNNNNGC 2 cut(s) 45, 74
NdeII GATC 1 cut(s) 196
NlaIII CATG 2 cut(s) 120, 133
NlaIV GGNNCC 1 cut(s) 154
NmeAIII GCCGAG 1 cut(s) 181
NmuCI GTSAC 1 cut(s) 55
NspI RCATGY 1 cut(s) 133
NspV TTCGAA 1 cut(s) 181
PciSI GCTCTTC 1 cut(s) 176
PfeI GAWTC 1 cut(s) 183
PflMI CCANNNNNTGG 1 cut(s) 85
PkrI GCNGC 4 cut(s) 35, 38, 67, 244
Psp124BI GAGCTC 1 cut(s) 171
PspN4I GGNNCC 1 cut(s) 154
PstI CTGCAG 1 cut(s) 211
PstNI CAGNNNCTG 1 cut(s) 65
SacI GAGCTC 1 cut(s) 171
SapI GCTCTTC 1 cut(s) 176
SaqAI TTAA 1 cut(s) 192
SatI GCNGC 4 cut(s) 34, 37, 66, 243
Sau3AI GATC 1 cut(s) 196
SduI GDGCHC 1 cut(s) 171
SetI ASST 4 cut(s) 41, 171, 205, 231
SfcI CTRYAG 1 cut(s) 207
SfuI TTCGAA 1 cut(s) 181
SmlI CTYRAG 1 cut(s) 224
SmoI CTYRAG 1 cut(s) 224
Sse9I AATT 1 cut(s) 188
SsiI CCGC 2 cut(s) 33, 243
SstI GAGCTC 1 cut(s) 171
TaaI ACNGT 2 cut(s) 61, 260
TaiI ACGT 1 cut(s) 205
TaqI TCGA 1 cut(s) 181
TasI AATT 1 cut(s) 188
TauI GCSGC 2 cut(s) 36, 245
TfiI GAWTC 1 cut(s) 183
Tru1I TTAA 1 cut(s) 192
Tru9I TTAA 1 cut(s) 192
TscAI CASTG 1 cut(s) 66
TseFI GTSAC 1 cut(s) 55
TseI GCWGC 2 cut(s) 36, 65
Tsp45I GTSAC 1 cut(s) 55
TspDTI ATGAA 1 cut(s) 105
TspRI CASTG 1 cut(s) 66
Van91I CCANNNNNTGG 1 cut(s) 85
XapI RAATTY 1 cut(s) 188
XceI RCATGY 1 cut(s) 133
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.