RchiOBHm_Chr6g0306321

ultraviolet-B receptor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0019675
Physical Location & Seq
Reverse (-)
65041881 .. 65043237
1357 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ27534

Sequence Viewer

Length: 327 bp
ATGGAGGAGAGCGATGATGTCAGCTTGTCTCCCTCCAGTGGCGGCAACTTGGCTCGTAAAGTGGTGGCGGTGGCTGCCGGAGAAGCTCACACTCTGGCGCTCACAGGTGATGGGTATGTGTATTCATGGGGGAGAGGCATGTTTGGGCGGCTCGGAACTGGTTCGGAATCCGACGAGCTCTGTCCGGTTCGGGTCAAATTTAAACCAGAAAAGGGGCTCAAATTTGTGGGAGTGGCTGCTGGTGCTTACCATAGTCTTGCTCTGGCTGATGATGGGTCCATTTGGTGTTGGGGTTACAACATCTGTATCCTTCATAACAGGATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RCC1

Protein Analysis

108

Amino Acids

11.46

Weight (kDa)

5.84

Isoelectric Point (pI)

26.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WD40_RLD PF25390 14 - 100 3.2e-23 RCC1-like domain
RCC1_2 PF13540 21 - 46 2.3e-09 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 37 - 88 1.3e-16 Regulator of chromosome condensation (RCC1) repeat
RCC1_2 PF13540 76 - 100 2.3e-09 Regulator of chromosome condensation (RCC1) repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019675)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g35481
malus_domestica MD15G1092900.v1.1
prunus_persica Prupe.1G447800_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0306321 RchiOBHm_Chr6g0306381
rosa_rugosa Rorug06G0352000
rosa_samantha Rh6DG462000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 42, 68, 148
AcsI RAATTY 2 cut(s) 197, 221
AfiI CCNNNNNNNGG 2 cut(s) 38, 212
AluBI AGCT 3 cut(s) 24, 86, 178
AluI AGCT 3 cut(s) 24, 86, 178
Alw21I GWGCWC 1 cut(s) 180
Alw26I GTCTC 1 cut(s) 33
ApeKI GCWGC 2 cut(s) 74, 236
ApoI RAATTY 2 cut(s) 197, 221
Asp700I GAANNNNTTC 1 cut(s) 160
AspLEI GCGC 1 cut(s) 100
AspS9I GGNCC 1 cut(s) 276
AsuHPI GGTGA 1 cut(s) 119
AvaII GGWCC 1 cut(s) 276
BaeI ACNNNNGTAYC 2 cut(s) 289, 322
BanII GRGCYC 2 cut(s) 180, 219
Bbv12I GWGCWC 1 cut(s) 180
BbvI GCAGC 2 cut(s) 61, 223
BccI CCATC 2 cut(s) 104, 266
BciVI GTATCC 1 cut(s) 317
BcoDI GTCTC 1 cut(s) 33
BfoI RGCGCY 1 cut(s) 101
BfuI GTATCC 1 cut(s) 317
BisI GCNGC 4 cut(s) 43, 75, 149, 237
BlsI GCNGC 4 cut(s) 44, 76, 150, 238
Bme18I GGWCC 1 cut(s) 276
BmgT120I GGNCC 1 cut(s) 276
BmiI GGNNCC 1 cut(s) 277
BpmI CTGGAG 1 cut(s) 19
BsaWI WCCGGW 1 cut(s) 184
Bsc4I CCNNNNNNNGG 2 cut(s) 38, 212
Bse1I ACTGG 2 cut(s) 36, 163
BseLI CCNNNNNNNGG 2 cut(s) 38, 212
BseNI ACTGG 2 cut(s) 36, 163
BseRI GAGGAG 1 cut(s) 20
BseXI GCAGC 2 cut(s) 61, 223
BsiHKAI GWGCWC 1 cut(s) 180
BsiSI CCGG 2 cut(s) 78, 185
BslI CCNNNNNNNGG 2 cut(s) 38, 212
BsmAI GTCTC 1 cut(s) 33
Bsp1286I GDGCHC 2 cut(s) 180, 219
BspACI CCGC 3 cut(s) 42, 68, 148
BspLI GGNNCC 1 cut(s) 277
BsrI ACTGG 2 cut(s) 36, 163
BstH2I RGCGCY 1 cut(s) 101
BstHHI GCGC 1 cut(s) 100
BstMAI GTCTC 1 cut(s) 33
BstMWI GCNNNNNNNGC 3 cut(s) 74, 83, 242
BstNSI RCATGY 1 cut(s) 142
BstV1I GCAGC 2 cut(s) 61, 223
BsuI GTATCC 1 cut(s) 317
BtgZI GCGATG 1 cut(s) 27
BtsIMutI CAGTG 1 cut(s) 43
CfoI GCGC 1 cut(s) 100
Cfr13I GGNCC 1 cut(s) 276
CviAII CATG 2 cut(s) 126, 139
CviJI RGCY 9 cut(s) 24, 53, 74, 86, 151, 178, 217, 236, 266
CviKI_1 RGCY 9 cut(s) 24, 53, 74, 86, 151, 178, 217, 236, 266
DraI TTTAAA 1 cut(s) 202
Ecl136II GAGCTC 1 cut(s) 178
Eco24I GRGCYC 2 cut(s) 180, 219
Eco47I GGWCC 1 cut(s) 276
Eco53kI GAGCTC 1 cut(s) 178
EcoICRI GAGCTC 1 cut(s) 178
EcoT38I GRGCYC 2 cut(s) 180, 219
FaeI CATG 2 cut(s) 129, 142
FaiI YATR 5 cut(s) 117, 127, 140, 252, 315
FatI CATG 2 cut(s) 125, 138
Fnu4HI GCNGC 4 cut(s) 43, 75, 149, 237
FriOI GRGCYC 2 cut(s) 180, 219
Fsp4HI GCNGC 4 cut(s) 43, 75, 149, 237
GlaI GCGC 1 cut(s) 99
GluI GCNGC 4 cut(s) 43, 75, 149, 237
GsuI CTGGAG 1 cut(s) 19
HaeII RGCGCY 1 cut(s) 101
HapII CCGG 2 cut(s) 78, 185
HhaI GCGC 1 cut(s) 100
Hin1II CATG 2 cut(s) 129, 142
Hin6I GCGC 1 cut(s) 98
HinP1I GCGC 1 cut(s) 98
HinfI GANTC 1 cut(s) 167
HpaII CCGG 2 cut(s) 78, 185
HphI GGTGA 1 cut(s) 119
Hpy188I TCNGA 3 cut(s) 155, 166, 172
Hpy99I CGWCG 1 cut(s) 176
HpyAV CCTTC 1 cut(s) 320
HpyF10VI GCNNNNNNNGC 3 cut(s) 74, 83, 242
Hsp92II CATG 2 cut(s) 129, 142
HspAI GCGC 1 cut(s) 98
Lsp1109I GCAGC 2 cut(s) 61, 223
MaeIII GTNAC 1 cut(s) 293
MhlI GDGCHC 2 cut(s) 180, 219
MluCI AATT 2 cut(s) 197, 221
MmeI TCCRAC 1 cut(s) 195
MnlI CCTC 2 cut(s) 43, 128
MroXI GAANNNNTTC 1 cut(s) 160
MseI TTAA 1 cut(s) 201
MspI CCGG 2 cut(s) 78, 185
MwoI GCNNNNNNNGC 3 cut(s) 74, 83, 242
NlaIII CATG 2 cut(s) 129, 142
NlaIV GGNNCC 1 cut(s) 277
NspI RCATGY 1 cut(s) 142
PdmI GAANNNNTTC 1 cut(s) 160
PfeI GAWTC 1 cut(s) 167
PkrI GCNGC 4 cut(s) 44, 76, 150, 238
Psp124BI GAGCTC 1 cut(s) 180
PspN4I GGNNCC 1 cut(s) 277
PspPI GGNCC 1 cut(s) 276
SacI GAGCTC 1 cut(s) 180
SaqAI TTAA 1 cut(s) 201
SatI GCNGC 4 cut(s) 43, 75, 149, 237
Sau96I GGNCC 1 cut(s) 276
SduI GDGCHC 2 cut(s) 180, 219
SetI ASST 4 cut(s) 26, 88, 109, 180
SinI GGWCC 1 cut(s) 276
Sse9I AATT 2 cut(s) 197, 221
SsiI CCGC 3 cut(s) 42, 68, 148
SstI GAGCTC 1 cut(s) 180
TasI AATT 2 cut(s) 197, 221
TauI GCSGC 2 cut(s) 45, 151
TfiI GAWTC 1 cut(s) 167
Tru1I TTAA 1 cut(s) 201
Tru9I TTAA 1 cut(s) 201
TscAI CASTG 1 cut(s) 43
TseI GCWGC 2 cut(s) 74, 236
TspDTI ATGAA 2 cut(s) 114, 302
TspRI CASTG 1 cut(s) 43
VpaK11BI GGWCC 1 cut(s) 276
XapI RAATTY 2 cut(s) 197, 221
XceI RCATGY 1 cut(s) 142
XmnI GAANNNNTTC 1 cut(s) 160
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.