Rorug06G0352000

ultraviolet-B receptor

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Forward (+)
50094824 .. 50096053
1230 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0352000.1

Sequence Viewer

Length: 1230 bp
ATGGCGCAGTCTTCCAAATTGGTGGAAGAGATGGTCGCACAATTCCTGTCGAGATTACCATCTAAAGCATTGATGCGATTCAAATGCATTCGTAAGTCGTGGTACAATCTTATAAATAGTCCAAGTTTCGTGGCCCAGAATCTTTTTAATTCCATGAACAACAAATTCACCTCTTCCACTTGCATCATTGCCAAGCATACTGTTCTTAAGGATAGTAGCATTACAGATAGGAATGAAATTTCTACTATCCTTGGGGATGGACACTATGATAAGAAGCAAATTTTGCTTTCATCACTAACTCTTTGCGACAATCTTGATGGTGATGACCAAGAGCTTTATTGTATTATTGAGGACGACCTTATTGTTCCTTTTCCTCTATGTAGAAATTCCTATAATTTTTATATTGCAGGTCATTGTGATGGGATTATTTGTCTTAGTTCATTTCTTTGCAATGATAGGGATATTGCTTTATGCAACCCTTCAATCAAGGAATTCAATCATCTTCCAAAATCCTGTATTCATCTCCCCCCCAAAGATGAAGATGATTATGTACATGAATGTAACGTGGGATTTGGCTATGATTCCAAAGCAAAGGTTTACAAGGTTGTTAGAATTGTCGATTTTTCTTCGTCACATCCTCCAAGAGCAGAGGTGTACACCTTAGGTGCAGATTGTTGGATAGAGATCAAGGCATTTGTACTGGGAACTATCAGCAGCCCACGTTCTTTACATATGCACTTTAAGGGAATTTATTATTGGAGTGGGTTTAGTTATATTACGAGAGAGCTACAGTACGTCTTATTTGCATTCGACATGAGTGATGAGCTATTTTATTTGATATATCTACCGGAGGCTGCATTTGGAATTTACTGTAATCTTGCTGTGTGGAAAGAATCCCTTCTTCTTATCACCCATAGAGAAGAAGCTCCTAAATGTTTCGATTTATGGCTAAATGAAGACTCTGATTTTTTGAAAGGTTCATGGACAAAATACTTCACTATCAAACCTATAGAAGTTGATATTCCGTTAGTATTTTGGAAAAGTAACGAGATTCTTATGGTGAATGTTGATCGACGTATAGTTTCCTATAACCTTGATACCCAAACGCTCAAGTGTCTTCCGATTCATGGAGCAGAAGATCCTTTATGTATTTATGCTATTAATTATGTAAATAGCATTATTTCAGTAAAGAGAAACAATAAACTCGAGTGCGTTGAAACTTATATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

409

Amino Acids

47.07

Weight (kDa)

5.59

Isoelectric Point (pI)

45.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_1 PF07734 130 - 379 1.8e-20 F-box associated beta propeller domain
FBA_3 PF08268 132 - 380 1.7e-18 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0019675)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g35481
malus_domestica MD15G1092900.v1.1
prunus_persica Prupe.1G447800_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0306321 RchiOBHm_Chr6g0306381
rosa_rugosa Rorug06G0352000
rosa_samantha Rh6DG462000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 113
Acc36I ACCTGC 1 cut(s) 398
AclWI GGATC 1 cut(s) 1133
AcsI RAATTY 7 cut(s) 164, 237, 279, 385, 491, 747, 864
AfaI GTAC 5 cut(s) 104, 552, 656, 699, 794
AfiI CCNNNNNNNGG 1 cut(s) 1127
AflII CTTAAG 1 cut(s) 206
AgsI TTSAA 5 cut(s) 82, 483, 496, 973, 1217
AjuI GAANNNNNNNTTGG 2 cut(s) 739, 771
AluBI AGCT 4 cut(s) 334, 787, 826, 926
AluI AGCT 4 cut(s) 334, 787, 826, 926
AlwI GGATC 1 cut(s) 1133
Ama87I CYCGRG 1 cut(s) 1205
AoxI GGCC 1 cut(s) 132
ApeKI GCWGC 2 cut(s) 714, 854
ApoI RAATTY 7 cut(s) 164, 237, 279, 385, 491, 747, 864
AseI ATTAAT 1 cut(s) 1161
Asp700I GAANNNNTTC 1 cut(s) 897
AspLEI GCGC 1 cut(s) 7
AspS9I GGNCC 1 cut(s) 133
AsuHPI GGTGA 4 cut(s) 160, 332, 901, 1072
AvaI CYCGRG 1 cut(s) 1205
AxyI CCTNAGG 1 cut(s) 661
BbsI GAAGAC 3 cut(s) 3, 963, 1109
BbvI GCAGC 2 cut(s) 726, 841
BccI CCATC 5 cut(s) 25, 67, 251, 311, 413
BcgI CGANNNNNNTGC 2 cut(s) 66, 100
BfaI CTAG 1 cut(s) 1228
BfmI CTRYAG 2 cut(s) 788, 1008
BfrI CTTAAG 1 cut(s) 206
BfuAI ACCTGC 1 cut(s) 398
BisI GCNGC 2 cut(s) 715, 855
BlsI GCNGC 2 cut(s) 716, 856
BmeT110I CYCGRG 1 cut(s) 1205
BmgT120I GGNCC 1 cut(s) 133
BmrI ACTGGG 1 cut(s) 710
BmsI GCATC 2 cut(s) 63, 192
BmuI ACTGGG 1 cut(s) 710
BpiI GAAGAC 3 cut(s) 3, 963, 1109
BpuEI CTTGAG 1 cut(s) 1094
BsaBI GATNNNNATC 2 cut(s) 58, 683
BsaJI CCNNGG 1 cut(s) 250
BsaWI WCCGGW 1 cut(s) 847
Bsc4I CCNNNNNNNGG 1 cut(s) 1127
Bse1I ACTGG 1 cut(s) 705
Bse21I CCTNAGG 1 cut(s) 661
Bse3DI GCAATG 2 cut(s) 186, 457
Bse8I GATNNNNATC 2 cut(s) 58, 683
BseDI CCNNGG 1 cut(s) 250
BseGI GGATG 2 cut(s) 262, 634
BseJI GATNNNNATC 2 cut(s) 58, 683
BseLI CCNNNNNNNGG 1 cut(s) 1127
BseMI GCAATG 2 cut(s) 186, 457
BseNI ACTGG 1 cut(s) 705
BseXI GCAGC 2 cut(s) 726, 841
BsgI GTGCAG 1 cut(s) 687
BshFI GGCC 1 cut(s) 134
BsiHKCI CYCGRG 1 cut(s) 1205
BsiSI CCGG 1 cut(s) 848
BslI CCNNNNNNNGG 1 cut(s) 1127
BsmI GAATGC 2 cut(s) 87, 806
BsnI GGCC 1 cut(s) 134
BsoBI CYCGRG 1 cut(s) 1205
Bsp1407I TGTACA 2 cut(s) 550, 654
Bsp143I GATC 3 cut(s) 684, 1069, 1138
BspANI GGCC 1 cut(s) 134
BspMI ACCTGC 1 cut(s) 398
BspPI GGATC 1 cut(s) 1133
BspTI CTTAAG 1 cut(s) 206
BsrDI GCAATG 2 cut(s) 186, 457
BsrGI TGTACA 2 cut(s) 550, 654
BsrI ACTGG 1 cut(s) 705
BssECI CCNNGG 1 cut(s) 250
BssMI GATC 3 cut(s) 684, 1069, 1138
BssT1I CCWWGG 1 cut(s) 250
Bst4CI ACNGT 3 cut(s) 202, 792, 872
Bst6I CTCTTC 2 cut(s) 21, 178
BstAFI CTTAAG 1 cut(s) 206
BstAPI GCANNNNNTGC 1 cut(s) 283
BstAUI TGTACA 2 cut(s) 550, 654
BstDEI CTNAG 2 cut(s) 434, 661
BstF5I GGATG 2 cut(s) 262, 634
BstHHI GCGC 1 cut(s) 7
BstKTI GATC 3 cut(s) 687, 1072, 1141
BstMBI GATC 3 cut(s) 684, 1069, 1138
BstMWI GCNNNNNNNGC 1 cut(s) 283
BstSFI CTRYAG 2 cut(s) 788, 1008
BstV1I GCAGC 2 cut(s) 726, 841
BstV2I GAAGAC 3 cut(s) 3, 963, 1109
BstX2I RGATCY 1 cut(s) 1138
BstXI CCANNNNNNTGG 1 cut(s) 22
BstYI RGATCY 1 cut(s) 1138
Bsu36I CCTNAGG 1 cut(s) 661
BsuRI GGCC 1 cut(s) 134
BtsCI GGATG 2 cut(s) 262, 634
BveI ACCTGC 1 cut(s) 398
CfoI GCGC 1 cut(s) 7
Cfr13I GGNCC 1 cut(s) 133
Csp6I GTAC 5 cut(s) 103, 551, 655, 698, 793
CspCI CAANNNNNGTGG 2 cut(s) 111, 146
CviAII CATG 5 cut(s) 154, 554, 814, 981, 1127
CviJI RGCY 9 cut(s) 134, 334, 576, 717, 787, 826, 854, 926, 949
CviKI_1 RGCY 9 cut(s) 134, 334, 576, 717, 787, 826, 854, 926, 949
CviQI GTAC 5 cut(s) 103, 551, 655, 698, 793
DdeI CTNAG 2 cut(s) 434, 661
DpnI GATC 3 cut(s) 686, 1071, 1140
DpnII GATC 3 cut(s) 684, 1069, 1138
Eam1104I CTCTTC 2 cut(s) 21, 178
EarI CTCTTC 2 cut(s) 21, 178
Eco130I CCWWGG 1 cut(s) 250
Eco81I CCTNAGG 1 cut(s) 661
Eco88I CYCGRG 1 cut(s) 1205
EcoRI GAATTC 1 cut(s) 491
EcoT14I CCWWGG 1 cut(s) 250
EcoT22I ATGCAT 1 cut(s) 89
ErhI CCWWGG 1 cut(s) 250
FaeI CATG 5 cut(s) 157, 557, 817, 984, 1130
FalI AAGNNNNNCTT 2 cut(s) 882, 914
FatI CATG 5 cut(s) 153, 553, 813, 980, 1126
FauNDI CATATG 1 cut(s) 732
Fnu4HI GCNGC 2 cut(s) 715, 855
FokI GGATG 2 cut(s) 269, 621
Fsp4HI GCNGC 2 cut(s) 715, 855
FspBI CTAG 1 cut(s) 1228
GlaI GCGC 1 cut(s) 6
GluI GCNGC 2 cut(s) 715, 855
HaeIII GGCC 1 cut(s) 134
HapII CCGG 1 cut(s) 848
HhaI GCGC 1 cut(s) 7
Hin1II CATG 5 cut(s) 157, 557, 817, 984, 1130
Hin6I GCGC 1 cut(s) 5
HinP1I GCGC 1 cut(s) 5
HinfI GANTC 7 cut(s) 78, 139, 581, 893, 959, 1051, 1123
HpaII CCGG 1 cut(s) 848
HphI GGTGA 4 cut(s) 160, 332, 901, 1072
Hpy166II GTNNAC 3 cut(s) 598, 655, 657
Hpy188I TCNGA 2 cut(s) 964, 1122
Hpy188III TCNNGA 2 cut(s) 51, 314
Hpy8I GTNNAC 3 cut(s) 598, 655, 657
Hpy99I CGWCG 1 cut(s) 1077
HpyAV CCTTC 2 cut(s) 489, 908
HpyCH4III ACNGT 3 cut(s) 202, 792, 872
HpyCH4IV ACGT 4 cut(s) 564, 721, 795, 1075
HpyCH4V TGCA 9 cut(s) 87, 183, 407, 450, 474, 668, 736, 806, 857
HpyF10VI GCNNNNNNNGC 1 cut(s) 283
HpyF3I CTNAG 2 cut(s) 434, 661
HpySE526I ACGT 4 cut(s) 564, 721, 795, 1075
Hsp92II CATG 5 cut(s) 157, 557, 817, 984, 1130
HspAI GCGC 1 cut(s) 5
Kzo9I GATC 3 cut(s) 684, 1069, 1138
LmnI GCTCC 2 cut(s) 931, 1130
LpnPI CCDG 6 cut(s) 59, 149, 393, 526, 686, 861
Lsp1109I GCAGC 2 cut(s) 726, 841
LweI GCATC 2 cut(s) 63, 192
MaeI CTAG 1 cut(s) 1228
MaeII ACGT 4 cut(s) 564, 721, 795, 1075
MaeIII GTNAC 3 cut(s) 560, 630, 1043
MalI GATC 3 cut(s) 686, 1071, 1140
MboI GATC 3 cut(s) 684, 1069, 1138
MflI RGATCY 1 cut(s) 1138
MlyI GAGTC 1 cut(s) 953
MmeI TCCRAC 1 cut(s) 656
MnlI CCTC 6 cut(s) 181, 343, 384, 643, 648, 844
Mph1103I ATGCAT 1 cut(s) 89
MroXI GAANNNNTTC 1 cut(s) 897
MseI TTAA 4 cut(s) 147, 207, 741, 1161
MslI CAYNNNNRTG 1 cut(s) 417
MspCI CTTAAG 1 cut(s) 206
MspI CCGG 1 cut(s) 848
Mva1269I GAATGC 2 cut(s) 87, 806
MwoI GCNNNNNNNGC 1 cut(s) 283
NdeI CATATG 1 cut(s) 732
NdeII GATC 3 cut(s) 684, 1069, 1138
NlaIII CATG 5 cut(s) 157, 557, 817, 984, 1130
NmuCI GTSAC 1 cut(s) 630
NsiI ATGCAT 1 cut(s) 89
PaeR7I CTCGAG 1 cut(s) 1205
PctI GAATGC 2 cut(s) 87, 806
PdmI GAANNNNTTC 1 cut(s) 897
PfeI GAWTC 6 cut(s) 78, 139, 581, 893, 1051, 1123
PkrI GCNGC 2 cut(s) 716, 856
PleI GAGTC 1 cut(s) 953
PpsI GAGTC 1 cut(s) 953
PshBI ATTAAT 1 cut(s) 1161
PsiI TTATAA 1 cut(s) 113
PspPI GGNCC 1 cut(s) 133
PspXI VCTCGAGB 1 cut(s) 1205
PsuI RGATCY 1 cut(s) 1138
RsaI GTAC 5 cut(s) 104, 552, 656, 699, 794
RsaNI GTAC 5 cut(s) 103, 551, 655, 698, 793
RseI CAYNNNNRTG 1 cut(s) 417
SaqAI TTAA 4 cut(s) 147, 207, 741, 1161
SatI GCNGC 2 cut(s) 715, 855
Sau3AI GATC 3 cut(s) 684, 1069, 1138
Sau96I GGNCC 1 cut(s) 133
SchI GAGTC 1 cut(s) 953
SfaNI GCATC 2 cut(s) 63, 192
SfcI CTRYAG 2 cut(s) 788, 1008
Sfr274I CTCGAG 1 cut(s) 1205
SlaI CTCGAG 1 cut(s) 1205
SmiMI CAYNNNNRTG 1 cut(s) 417
SmlI CTYRAG 3 cut(s) 206, 1109, 1205
SmoI CTYRAG 3 cut(s) 206, 1109, 1205
SspMI CTAG 1 cut(s) 1228
StyI CCWWGG 1 cut(s) 250
TaaI ACNGT 3 cut(s) 202, 792, 872
TaiI ACGT 4 cut(s) 567, 724, 798, 1078
TaqI TCGA 6 cut(s) 50, 618, 810, 939, 1072, 1206
TatI WGTACW 3 cut(s) 550, 654, 697
TfiI GAWTC 6 cut(s) 78, 139, 581, 893, 1051, 1123
Tru1I TTAA 4 cut(s) 147, 207, 741, 1161
Tru9I TTAA 4 cut(s) 147, 207, 741, 1161
TseFI GTSAC 1 cut(s) 630
TseI GCWGC 2 cut(s) 714, 854
Tsp45I GTSAC 1 cut(s) 630
TspGWI ACGGA 1 cut(s) 1014
Vha464I CTTAAG 1 cut(s) 206
VspI ATTAAT 1 cut(s) 1161
XapI RAATTY 7 cut(s) 164, 237, 279, 385, 491, 747, 864
XhoI CTCGAG 1 cut(s) 1205
XmnI GAANNNNTTC 1 cut(s) 897
XspI CTAG 1 cut(s) 1228
Zsp2I ATGCAT 1 cut(s) 89
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.