MD15G1092900.v1.1

ultraviolet-B receptor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0019675
Physical Location & Seq
Forward (+)
6449860 .. 6450500
641 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1092900.v1.1.491

Sequence Viewer

Length: 318 bp
ATGGAAGAGGAAAGCGCCAGTCCTCCGCACGGCCGCAACTTGTCTCGCAAGGTGGTGGCGGTGGCCGCCGGCGAATCACACACTCTGGCTCTCACCGGCGATGGGTTTGTGTATTCGTGGGGAAGAGGCATGTTTGGGAGGCTCGGGACCGGTTCAGAATCCGACGAGCTCTTCCCTGTCCGAATCAAGTTCAATGATCCTCGCAGTGCAAAAGGAACGGGGCTCAAATTTGTGGGAGTTGCAGCCGGTGCCTACCACAGTCTTGCTCTTGCTGTGATGGGGTTTTGTTCCTTGACAAACTTCATGATGATAATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RCC1

Protein Analysis

106

Amino Acids

11.14

Weight (kDa)

7.95

Isoelectric Point (pI)

23.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WD40_RLD PF25390 8 - 91 3.8e-17 RCC1-like domain
RCC1_2 PF13540 18 - 43 3.8e-08 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 34 - 90 2.6e-14 Regulator of chromosome condensation (RCC1) repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019675)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g35481
malus_domestica MD15G1092900.v1.1
prunus_persica Prupe.1G447800_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0306321 RchiOBHm_Chr6g0306381
rosa_rugosa Rorug06G0352000
rosa_samantha Rh6DG462000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 248
AciI CCGC 4 cut(s) 26, 34, 59, 66
AclWI GGATC 1 cut(s) 191
AcoI YGGCCR 2 cut(s) 31, 63
AcsI RAATTY 1 cut(s) 227
AfiI CCNNNNNNNGG 2 cut(s) 29, 102
AgeI ACCGGT 1 cut(s) 149
AgsI TTSAA 1 cut(s) 193
AluBI AGCT 1 cut(s) 169
AluI AGCT 1 cut(s) 169
Alw21I GWGCWC 1 cut(s) 171
Alw26I GTCTC 1 cut(s) 48
AlwI GGATC 1 cut(s) 191
Ama87I CYCGRG 1 cut(s) 143
AoxI GGCC 2 cut(s) 31, 63
ApeKI GCWGC 1 cut(s) 242
ApoI RAATTY 1 cut(s) 227
AsiGI ACCGGT 1 cut(s) 149
AspLEI GCGC 1 cut(s) 17
AspS9I GGNCC 1 cut(s) 147
AsuHPI GGTGA 1 cut(s) 85
AvaI CYCGRG 1 cut(s) 143
AvaII GGWCC 1 cut(s) 147
BanI GGYRCC 1 cut(s) 248
BanII GRGCYC 2 cut(s) 171, 225
Bbv12I GWGCWC 1 cut(s) 171
BbvI GCAGC 1 cut(s) 254
BccI CCATC 2 cut(s) 95, 271
BceAI ACGGC 1 cut(s) 46
BcoDI GTCTC 1 cut(s) 48
BfoI RGCGCY 1 cut(s) 18
BisI GCNGC 3 cut(s) 34, 66, 243
BlsI GCNGC 3 cut(s) 35, 67, 244
Bme18I GGWCC 1 cut(s) 147
BmeT110I CYCGRG 1 cut(s) 143
BmgT120I GGNCC 1 cut(s) 147
BmiI GGNNCC 2 cut(s) 148, 250
BsaWI WCCGGW 1 cut(s) 149
Bsc4I CCNNNNNNNGG 2 cut(s) 29, 102
Bse118I RCCGGY 4 cut(s) 68, 95, 149, 245
Bse1I ACTGG 1 cut(s) 18
BseLI CCNNNNNNNGG 2 cut(s) 29, 102
BseNI ACTGG 1 cut(s) 18
BseX3I CGGCCG 1 cut(s) 31
BseXI GCAGC 1 cut(s) 254
Bsh1285I CGRYCG 1 cut(s) 34
BshFI GGCC 2 cut(s) 33, 65
BshNI GGYRCC 1 cut(s) 248
BshTI ACCGGT 1 cut(s) 149
BsiEI CGRYCG 1 cut(s) 34
BsiHKAI GWGCWC 1 cut(s) 171
BsiHKCI CYCGRG 1 cut(s) 143
BsiSI CCGG 4 cut(s) 69, 96, 150, 246
BslFI GGGAC 1 cut(s) 160
BslI CCNNNNNNNGG 2 cut(s) 29, 102
BsmAI GTCTC 1 cut(s) 48
BsmFI GGGAC 1 cut(s) 160
BsnI GGCC 2 cut(s) 33, 65
BsoBI CYCGRG 1 cut(s) 143
Bsp1286I GDGCHC 2 cut(s) 171, 225
Bsp143I GATC 1 cut(s) 196
BspACI CCGC 4 cut(s) 26, 34, 59, 66
BspANI GGCC 2 cut(s) 33, 65
BspHI TCATGA 1 cut(s) 303
BspLI GGNNCC 2 cut(s) 148, 250
BspPI GGATC 1 cut(s) 191
BspQI GCTCTTC 1 cut(s) 176
BspT107I GGYRCC 1 cut(s) 248
BsrFI RCCGGY 4 cut(s) 68, 95, 149, 245
BsrI ACTGG 1 cut(s) 18
BssAI RCCGGY 4 cut(s) 68, 95, 149, 245
BssMI GATC 1 cut(s) 196
Bst4CI ACNGT 1 cut(s) 260
Bst6I CTCTTC 2 cut(s) 118, 176
BstAPI GCANNNNNTGC 1 cut(s) 248
BstC8I GCNNGC 1 cut(s) 70
BstH2I RGCGCY 1 cut(s) 18
BstHHI GCGC 1 cut(s) 17
BstKTI GATC 1 cut(s) 199
BstMAI GTCTC 1 cut(s) 48
BstMBI GATC 1 cut(s) 196
BstMCI CGRYCG 1 cut(s) 34
BstMWI GCNNNNNNNGC 2 cut(s) 65, 248
BstNSI RCATGY 1 cut(s) 133
BstV1I GCAGC 1 cut(s) 254
BstZI CGGCCG 1 cut(s) 31
BsuRI GGCC 2 cut(s) 33, 65
BtgZI GCGATG 1 cut(s) 114
BtsI GCAGTG 1 cut(s) 211
BtsIMutI CAGTG 1 cut(s) 211
Cac8I GCNNGC 1 cut(s) 70
CciI TCATGA 1 cut(s) 303
CfoI GCGC 1 cut(s) 17
Cfr10I RCCGGY 4 cut(s) 68, 95, 149, 245
Cfr13I GGNCC 1 cut(s) 147
CspAI ACCGGT 1 cut(s) 149
CviAII CATG 2 cut(s) 130, 304
CviJI RGCY 7 cut(s) 33, 65, 89, 142, 169, 223, 245
CviKI_1 RGCY 7 cut(s) 33, 65, 89, 142, 169, 223, 245
DpnI GATC 1 cut(s) 198
DpnII GATC 1 cut(s) 196
EaeI YGGCCR 2 cut(s) 31, 63
EagI CGGCCG 1 cut(s) 31
Eam1104I CTCTTC 2 cut(s) 118, 176
EarI CTCTTC 2 cut(s) 118, 176
Ecl136II GAGCTC 1 cut(s) 169
EclXI CGGCCG 1 cut(s) 31
Eco24I GRGCYC 2 cut(s) 171, 225
Eco47I GGWCC 1 cut(s) 147
Eco52I CGGCCG 1 cut(s) 31
Eco53kI GAGCTC 1 cut(s) 169
Eco88I CYCGRG 1 cut(s) 143
EcoICRI GAGCTC 1 cut(s) 169
EcoT38I GRGCYC 2 cut(s) 171, 225
FaeI CATG 2 cut(s) 133, 307
FaiI YATR 3 cut(s) 131, 305, 316
FaqI GGGAC 1 cut(s) 160
FatI CATG 2 cut(s) 129, 303
Fnu4HI GCNGC 3 cut(s) 34, 66, 243
FriOI GRGCYC 2 cut(s) 171, 225
Fsp4HI GCNGC 3 cut(s) 34, 66, 243
GlaI GCGC 1 cut(s) 16
GluI GCNGC 3 cut(s) 34, 66, 243
HaeII RGCGCY 1 cut(s) 18
HaeIII GGCC 2 cut(s) 33, 65
HapII CCGG 4 cut(s) 69, 96, 150, 246
HhaI GCGC 1 cut(s) 17
Hin1II CATG 2 cut(s) 133, 307
Hin6I GCGC 1 cut(s) 15
HinP1I GCGC 1 cut(s) 15
HinfI GANTC 3 cut(s) 74, 158, 183
HpaII CCGG 4 cut(s) 69, 96, 150, 246
HphI GGTGA 1 cut(s) 85
Hpy188I TCNGA 3 cut(s) 157, 163, 182
Hpy188III TCNNGA 2 cut(s) 145, 304
Hpy99I CGWCG 1 cut(s) 167
HpyCH4III ACNGT 1 cut(s) 260
HpyCH4V TGCA 2 cut(s) 209, 242
HpyF10VI GCNNNNNNNGC 2 cut(s) 65, 248
Hsp92II CATG 2 cut(s) 133, 307
HspAI GCGC 1 cut(s) 15
KroI GCCGGC 1 cut(s) 68
KroNI GCCGGC 1 cut(s) 70
Kzo9I GATC 1 cut(s) 196
LguI GCTCTTC 1 cut(s) 176
LpnPI CCDG 7 cut(s) 31, 71, 82, 109, 163, 189, 259
Lsp1109I GCAGC 1 cut(s) 254
MalI GATC 1 cut(s) 198
MboI GATC 1 cut(s) 196
MboII GAAGA 3 cut(s) 17, 135, 163
MhlI GDGCHC 2 cut(s) 171, 225
MluCI AATT 1 cut(s) 227
MmeI TCCRAC 1 cut(s) 186
MnlI CCTC 4 cut(s) 33, 119, 132, 210
MreI CGCCGGCG 1 cut(s) 68
MroNI GCCGGC 1 cut(s) 68
MspI CCGG 4 cut(s) 69, 96, 150, 246
MwoI GCNNNNNNNGC 2 cut(s) 65, 248
NaeI GCCGGC 1 cut(s) 70
NdeII GATC 1 cut(s) 196
NgoMIV GCCGGC 1 cut(s) 68
NlaIII CATG 2 cut(s) 133, 307
NlaIV GGNNCC 2 cut(s) 148, 250
NspI RCATGY 1 cut(s) 133
PagI TCATGA 1 cut(s) 303
PciSI GCTCTTC 1 cut(s) 176
PdiI GCCGGC 1 cut(s) 70
PfeI GAWTC 3 cut(s) 74, 158, 183
PinAI ACCGGT 1 cut(s) 149
PkrI GCNGC 3 cut(s) 35, 67, 244
Psp124BI GAGCTC 1 cut(s) 171
PspN4I GGNNCC 2 cut(s) 148, 250
PspPI GGNCC 1 cut(s) 147
SacI GAGCTC 1 cut(s) 171
SapI GCTCTTC 1 cut(s) 176
SatI GCNGC 3 cut(s) 34, 66, 243
Sau3AI GATC 1 cut(s) 196
Sau96I GGNCC 1 cut(s) 147
SduI GDGCHC 2 cut(s) 171, 225
SetI ASST 2 cut(s) 54, 171
SgrAI CRCCGGYG 2 cut(s) 68, 95
SinI GGWCC 1 cut(s) 147
Sse9I AATT 1 cut(s) 227
SsiI CCGC 4 cut(s) 26, 34, 59, 66
SstI GAGCTC 1 cut(s) 171
TaaI ACNGT 1 cut(s) 260
TasI AATT 1 cut(s) 227
TauI GCSGC 2 cut(s) 36, 68
TfiI GAWTC 3 cut(s) 74, 158, 183
TscAI CASTG 1 cut(s) 211
TseI GCWGC 1 cut(s) 242
TspDTI ATGAA 1 cut(s) 292
TspRI CASTG 1 cut(s) 211
VpaK11BI GGWCC 1 cut(s) 147
XapI RAATTY 1 cut(s) 227
XceI RCATGY 1 cut(s) 133
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.