Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0012530

Physical Location & Seq

Genomic Coordinates Reverse (-)

26259180 .. 26262280

Gene Structure 3101 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g35610.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1686 bp

ATGGCTTCCTTAGGATTTTCTGTAGGCAGTGGAAACTCGTGTTTGCTGCCGAGAGCAGCAGTTTCCGATCACTCCATTCCGAACAGTGGCAGAGATGGATTTAATCCCTTAAAGAAGGGCGGTACCAGCAGGAAGCGCTTGACGTCCACAAACGTCGCAAGTCCTCCATTGCCGGCTATTGCAGCTCCTCATCTGCCGCCGAGTAAGGAAAGTGATGATCGAAGAAGCCACGTAGCTTGGACCAGTGTGCGGCAGGAGAGATGGGAAGGAGAGCTGCACGTACAAGGACAAATACCACTGTGGCTGAAAGGAACGTACCTAAGAAATGGTCCGGGACTTTGGCACATTGAGGACTACAACTTCCGTCACCTCTTCGACGGCTACGCGATGCTAGCCAAGCTCCACTTTGAGAACGGCCGTCTGATCGCCGGCCACCGCCAAATCGAATCCGATGCTTATAAAGCCGCAATGAAGAGCAAAAAGCTATGCTACCGTGAGTTCTCAGAAGTTCCTAAACCGGATAATTTCCTATCCTACATTGGTGAGCTGGCCAACCTATTCTCCGGTGCATCCCTTACCGATAATGCCAACACCGGCGTAGTACAACTCGGTGATGGCCGGGTGGTGTGCCTCACTGAGACCCAAAAAGGGTCCATAGTGATTGACCCGGACACTTTGGACACAATAGGAAAATTCGAGTACACTGACTCGTTGGGAGGTTTGATCCATTCAGCACATCCTATTGTGACAGAGACCGAGTTCCTGACTTTGTTGCCTGATCTGATCAACCCGGGTTACTTGGTGGTGAGAATGGAGCCTGGTACGAATGAAAGGAAGGTGATCGGACGGGTTGACTGCAGACAAGGTCCGGCGCCGGGATGGGTTCATAGCTTTCCGATGACCGAGCACTACATAATTGTGCCCGAAATGCCGTTGAGGTATTGTGCAGGAAATTTGCTCAGGGCTGAACCAACACCATTGTACAAGTTTGAGTGGCATCCTGAGTCCAAGGCCTATATGCATGCTATGTGTAAAGCCAGTGGTAAAATTGTTGCGAGTGTGGAAGTGCCATTGTTTGTTACTTTCCATTTCATTAATGCATATGAAGAGAAAGATGAGGATGGGAGGGTGACGGCACTCATTGCAGATTGTTGCGAGCACAACGCTGATACCACCATCCTTGATAAGCTTAGGATACAGAATCTGCGTTCATATACTGGCGAAGAAGATGTGCTACCAGATGCTAGGGTTGGAAGGTTTAGAATCCCATTCGATGGGAGTGCATATGGAGAACTAGATGCAGCATTAGACCCAAATGAACATGGAAAAGGGATGGACATGTGCAGCATAAACCCTGCGTTTTTGGGTAAGAAGTATAGATATGCCTATGCTTGTGGAGCTGAGCGCCCTTGCAACTTCCCTAACACCCTCACAAAGATTGATTTGGTGGAGAAGAAAGCTAAGAATTGGTATGAAGAGGGCGCAGTGCCATCCGAACCATTCTTTGTCGCTCGACCAGGTGCAACTGAAGAAGATGATGGTGTGGTGATCTCGATGATCAGTGAGAAAAACGGAGGTGGGTACGCATTGGTATTAGATGGAACAACGTTTGAAGAGATTGCTAGAGCCAAGTTCCCTTATGGCCTTCCATATGGGCTGCATGGATGCTGGGTTCCAAAGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001763 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0006810 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008300 GO:0008610 GO:0009056 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009914 GO:0009926 GO:0009965 GO:0009987 GO:0010016 GO:0010033 GO:0010223 GO:0010346 GO:0010817 GO:0016042 GO:0016106 GO:0016108 GO:0016110 GO:0016114 GO:0016115 GO:0016116 GO:0016118 GO:0016119 GO:0016121 GO:0016122 GO:0016124 GO:0016491 GO:0016701 GO:0016702 GO:0018130 GO:0032501 GO:0032502 GO:0042214 GO:0042221 GO:0042445 GO:0042446 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044249 GO:0044255 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046247 GO:0046483 GO:0048366 GO:0048367 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051179 GO:0051213 GO:0051234 GO:0055114 GO:0060918 GO:0065007 GO:0065008 GO:0071704 GO:0099402 GO:1901334 GO:1901336 GO:1901360 GO:1901362 GO:1901575 GO:1901576 GO:1901600 GO:1901601 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

ko00906 map00906

Pfam Domains

Protein Families

RPE65

Protein Analysis

562

Amino Acids

62.13

Weight (kDa)

6.01

Isoelectric Point (pI)

37.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPE65	PF03055	82 - 559	5.3e-101	Retinal pigment epithelial membrane protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0012530)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32810 AT4G32810
fragaria_vesca	FvH4_2g35610
malus_domestica	MD08G1113800.v1.1 MD15G1093500.v1.1
prunus_persica	Prupe.1G448400_v2.0.a1
pyrus_communis	pycom08g09450
rosa_chinensis	RchiOBHm_Chr6g0306201
rosa_laevigata	RLG00000010814 RLG00000011166
rosa_multiflora	Rmu_sc0003594.1_g000004
rosa_roxburghii	Rroxscaffold_7G00161940
rosa_rugosa	Rorug06G0348000 Rorug06G0348000
rosa_samantha	Rh6AG460500 Rh6BG440900 Rh6CG474500 Rh6DG460800
rosa_wichuraiana	Rw6G040110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	459
AatII	GACGTC	1 cut(s)	146
Acc65I	GGTACC	1 cut(s)	122
AccB1I	GGYRCC	2 cut(s)	122, 871
AccB7I	CCANNNNNTGG	1 cut(s)	1274
AccII	CGCG	1 cut(s)	386
AciI	CCGC	5 cut(s)	120, 197, 250, 436, 465
AclI	AACGTT	1 cut(s)	1607
AclWI	GGATC	1 cut(s)	718
AcoI	YGGCCR	4 cut(s)	415, 430, 549, 616
AcsI	RAATTY	2 cut(s)	692, 952
AcuI	CTGAAG	1 cut(s)	1548
AcyI	GRCGYC	2 cut(s)	143, 872
AfaI	GTAC	8 cut(s)	124, 282, 317, 603, 701, 823, 983, 1583
AfeI	AGCGCT	1 cut(s)	137
AfiI	CCNNNNNNNGG	5 cut(s)	86, 249, 648, 875, 1274
AflIII	ACRYGT	1 cut(s)	1338
AgsI	TTSAA	1 cut(s)	1613
AjnI	CCWGG	2 cut(s)	817, 1516
AloI	GAACNNNNNNTCC	1 cut(s)	1656
Alw21I	GWGCWC	2 cut(s)	909, 1161
Alw26I	GTCTC	2 cut(s)	632, 746
AlwI	GGATC	1 cut(s)	718
AlwNI	CAGNNNCTG	1 cut(s)	1204
Ama87I	CYCGRG	1 cut(s)	790
Aor51HI	AGCGCT	1 cut(s)	137
AoxI	GGCC	6 cut(s)	415, 430, 549, 616, 1011, 1642
ApeKI	GCWGC	7 cut(s)	46, 56, 182, 274, 1301, 1344, 1657
ApoI	RAATTY	2 cut(s)	692, 952
AseI	ATTAAT	1 cut(s)	1095
Asp718I	GGTACC	1 cut(s)	122
AspLEI	GCGC	4 cut(s)	138, 874, 1407, 1484
AspS9I	GGNCC	4 cut(s)	240, 329, 651, 866
AsuC2I	CCSGG	6 cut(s)	333, 620, 668, 791, 792, 876
AsuHPI	GGTGA	7 cut(s)	359, 554, 623, 817, 850, 1141, 1558
AsuNHI	GCTAGC	1 cut(s)	391
AvaI	CYCGRG	1 cut(s)	790
AvaII	GGWCC	4 cut(s)	240, 329, 651, 866
AxyI	CCTNAGG	1 cut(s)	10
BaeGI	GKGCMC	1 cut(s)	924
BalI	TGGCCA	1 cut(s)	551
BanI	GGYRCC	2 cut(s)	122, 871
BarI	GAAGNNNNNNTAC	2 cut(s)	1218, 1250
BauI	CACGAG	1 cut(s)	37
Bbv12I	GWGCWC	2 cut(s)	909, 1161
BbvI	GCAGC	7 cut(s)	33, 68, 194, 261, 1313, 1356, 1644
BceAI	ACGGC	5 cut(s)	394, 402, 430, 916, 1149
BcgI	CGANNNNNNTGC	4 cut(s)	434, 468, 1262, 1296
BciT130I	CCWGG	2 cut(s)	819, 1518
BciVI	GTATCC	1 cut(s)	1188
BclI	TGATCA	2 cut(s)	783, 1557
BcnI	CCSGG	6 cut(s)	333, 620, 668, 791, 792, 876
BcoDI	GTCTC	2 cut(s)	632, 746
BfaI	CTAG	4 cut(s)	392, 1245, 1295, 1623
BfmI	CTRYAG	2 cut(s)	21, 856
BfoI	RGCGCY	3 cut(s)	139, 875, 1408
BfuI	GTATCC	1 cut(s)	1188
BlpI	GCTNAGC	1 cut(s)	1401
Bme1390I	CCNGG	8 cut(s)	333, 620, 668, 791, 792, 819, 876, 1518
Bme18I	GGWCC	4 cut(s)	240, 329, 651, 866
BmeT110I	CYCGRG	1 cut(s)	790
BmgT120I	GGNCC	4 cut(s)	240, 329, 651, 866
BmiI	GGNNCC	5 cut(s)	124, 652, 816, 873, 1674
BmrFI	CCNGG	8 cut(s)	333, 620, 668, 791, 792, 819, 876, 1518
BmsI	GCATC	7 cut(s)	378, 442, 578, 1006, 1231, 1288, 1655
BmtI	GCTAGC	1 cut(s)	395
Bpu10I	CCTNAGC	2 cut(s)	959, 1190
Bpu1102I	GCTNAGC	1 cut(s)	1401
BpuMI	CCSGG	6 cut(s)	333, 620, 668, 791, 792, 876
BsaAI	YACGTR	2 cut(s)	232, 280
BsaHI	GRCGYC	2 cut(s)	143, 872
BsaI	GGTCTC	2 cut(s)	632, 746
BsaJI	CCNNGG	2 cut(s)	790, 1008
BsaWI	WCCGGW	2 cut(s)	517, 563
BsaXI	ACNNNNNCTCC	2 cut(s)	545, 575
Bsc4I	CCNNNNNNNGG	5 cut(s)	86, 249, 648, 875, 1274
Bse118I	RCCGGY	3 cut(s)	172, 428, 593
Bse1I	ACTGG	3 cut(s)	243, 1038, 1222
Bse21I	CCTNAGG	1 cut(s)	10
Bse3DI	GCAATG	3 cut(s)	167, 474, 1140
BseBI	CCWGG	2 cut(s)	819, 1518
BseDI	CCNNGG	2 cut(s)	790, 1008
BseGI	GGATG	9 cut(s)	569, 736, 884, 997, 1126, 1176, 1338, 1490, 1670
BseLI	CCNNNNNNNGG	5 cut(s)	86, 249, 648, 875, 1274
BseMI	GCAATG	3 cut(s)	167, 474, 1140
BseMII	CTCAG	5 cut(s)	516, 627, 973, 993, 1392
BseNI	ACTGG	3 cut(s)	243, 1038, 1222
BseRI	GAGGAG	1 cut(s)	177
BseSI	GKGCMC	1 cut(s)	924
BseX3I	CGGCCG	1 cut(s)	415
BseXI	GCAGC	7 cut(s)	33, 68, 194, 261, 1313, 1356, 1644
BseYI	CCCAGC	1 cut(s)	1668
BsgI	GTGCAG	3 cut(s)	260, 966, 1363
Bsh1236I	CGCG	1 cut(s)	386
Bsh1285I	CGRYCG	1 cut(s)	418
BshFI	GGCC	6 cut(s)	417, 432, 551, 618, 1013, 1644
BshNI	GGYRCC	2 cut(s)	122, 871
BsiEI	CGRYCG	1 cut(s)	418
BsiHKAI	GWGCWC	2 cut(s)	909, 1161
BsiHKCI	CYCGRG	1 cut(s)	790
BslFI	GGGAC	1 cut(s)	348
BslI	CCNNNNNNNGG	5 cut(s)	86, 249, 648, 875, 1274
BsmAI	GTCTC	2 cut(s)	632, 746
BsmFI	GGGAC	1 cut(s)	348
BsnI	GGCC	6 cut(s)	417, 432, 551, 618, 1013, 1644
Bso31I	GGTCTC	2 cut(s)	632, 746
BsoBI	CYCGRG	1 cut(s)	790
Bsp1286I	GDGCHC	3 cut(s)	909, 924, 1161
Bsp1407I	TGTACA	1 cut(s)	981
Bsp143I	GATC	9 cut(s)	67, 217, 423, 723, 778, 783, 840, 1548, 1557
Bsp1720I	GCTNAGC	1 cut(s)	1401
BspACI	CCGC	5 cut(s)	120, 197, 250, 436, 465
BspANI	GGCC	6 cut(s)	417, 432, 551, 618, 1013, 1644
BspCNI	CTCAG	5 cut(s)	515, 628, 972, 994, 1393
BspFNI	CGCG	1 cut(s)	386
BspLI	GGNNCC	5 cut(s)	124, 652, 816, 873, 1674
BspMAI	CTGCAG	1 cut(s)	860
BspOI	GCTAGC	1 cut(s)	395
BspPI	GGATC	1 cut(s)	718
BspQI	GCTCTTC	1 cut(s)	467
BspT107I	GGYRCC	2 cut(s)	122, 871
BspTNI	GGTCTC	2 cut(s)	632, 746
BsrDI	GCAATG	3 cut(s)	167, 474, 1140
BsrFI	RCCGGY	3 cut(s)	172, 428, 593
BsrGI	TGTACA	1 cut(s)	981
BsrI	ACTGG	3 cut(s)	243, 1038, 1222
BssAI	RCCGGY	3 cut(s)	172, 428, 593
BssECI	CCNNGG	2 cut(s)	790, 1008
BssMI	GATC	9 cut(s)	67, 217, 423, 723, 778, 783, 840, 1548, 1557
BssNI	GRCGYC	2 cut(s)	143, 872
BssSI	CACGAG	1 cut(s)	37
BssT1I	CCWWGG	1 cut(s)	1008
Bst2BI	CACGAG	1 cut(s)	37
Bst2UI	CCWGG	2 cut(s)	819, 1518
Bst4CI	ACNGT	3 cut(s)	86, 300, 494
Bst6I	CTCTTC	5 cut(s)	377, 467, 1101, 1470, 1608
BstACI	GRCGYC	2 cut(s)	143, 872
BstAPI	GCANNNNNTGC	1 cut(s)	1142
BstAUI	TGTACA	1 cut(s)	981
BstBAI	YACGTR	2 cut(s)	232, 280
BstC8I	GCNNGC	6 cut(s)	174, 393, 430, 549, 1023, 1157
BstDEI	CTNAG	9 cut(s)	10, 320, 502, 636, 959, 1002, 1190, 1401, 1461
BstF5I	GGATG	9 cut(s)	569, 736, 884, 997, 1126, 1176, 1338, 1490, 1670
BstFNI	CGCG	1 cut(s)	386
BstH2I	RGCGCY	3 cut(s)	139, 875, 1408
BstHHI	GCGC	4 cut(s)	138, 874, 1407, 1484
BstKTI	GATC	9 cut(s)	70, 220, 426, 726, 781, 786, 843, 1551, 1560
BstMAI	GTCTC	2 cut(s)	632, 746
BstMBI	GATC	9 cut(s)	67, 217, 423, 723, 778, 783, 840, 1548, 1557
BstMCI	CGRYCG	1 cut(s)	418
BstMWI	GCNNNNNNNGC	9 cut(s)	126, 135, 182, 392, 397, 461, 928, 1142, 1397
BstNI	CCWGG	2 cut(s)	819, 1518
BstNSI	RCATGY	2 cut(s)	1025, 1342
BstSCI	CCNGG	8 cut(s)	331, 618, 666, 789, 790, 817, 874, 1516
BstSFI	CTRYAG	2 cut(s)	21, 856
BstSLI	GKGCMC	1 cut(s)	924
BstUI	CGCG	1 cut(s)	386
BstV1I	GCAGC	7 cut(s)	33, 68, 194, 261, 1313, 1356, 1644
BstZI	CGGCCG	1 cut(s)	415
Bsu36I	CCTNAGG	1 cut(s)	10
BsuI	GTATCC	1 cut(s)	1188
BsuRI	GGCC	6 cut(s)	417, 432, 551, 618, 1013, 1644
BtgZI	GCGATG	1 cut(s)	401
BtsCI	GGATG	9 cut(s)	569, 736, 884, 997, 1126, 1176, 1338, 1490, 1670
BtsI	GCAGTG	2 cut(s)	34, 1491
BtsIMutI	CAGTG	9 cut(s)	34, 91, 250, 296, 633, 702, 1045, 1491, 1567
Cac8I	GCNNGC	6 cut(s)	174, 393, 430, 549, 1023, 1157
CaiI	CAGNNNCTG	1 cut(s)	1204
CfoI	GCGC	4 cut(s)	138, 874, 1407, 1484
Cfr10I	RCCGGY	3 cut(s)	172, 428, 593
Cfr13I	GGNCC	4 cut(s)	240, 329, 651, 866
Cfr9I	CCCGGG	1 cut(s)	790
CsiI	ACCWGGT	1 cut(s)	1516
Csp6I	GTAC	8 cut(s)	123, 281, 316, 602, 700, 822, 982, 1582
CspCI	CAANNNNNGTGG	4 cut(s)	218, 253, 1162, 1197
CviAII	CATG	4 cut(s)	1022, 1322, 1339, 1661
CviQI	GTAC	8 cut(s)	123, 281, 316, 602, 700, 822, 982, 1582
DdeI	CTNAG	9 cut(s)	10, 320, 502, 636, 959, 1002, 1190, 1401, 1461
DinI	GGCGCC	1 cut(s)	873
DpnI	GATC	9 cut(s)	69, 219, 425, 725, 780, 785, 842, 1550, 1559
DpnII	GATC	9 cut(s)	67, 217, 423, 723, 778, 783, 840, 1548, 1557
EaeI	YGGCCR	4 cut(s)	415, 430, 549, 616
EagI	CGGCCG	1 cut(s)	415
Eam1104I	CTCTTC	5 cut(s)	377, 467, 1101, 1470, 1608
EarI	CTCTTC	5 cut(s)	377, 467, 1101, 1470, 1608
EclXI	CGGCCG	1 cut(s)	415
Eco130I	CCWWGG	1 cut(s)	1008
Eco147I	AGGCCT	1 cut(s)	1013
Eco31I	GGTCTC	2 cut(s)	632, 746
Eco47I	GGWCC	4 cut(s)	240, 329, 651, 866
Eco47III	AGCGCT	1 cut(s)	137
Eco52I	CGGCCG	1 cut(s)	415
Eco57I	CTGAAG	1 cut(s)	1548
Eco81I	CCTNAGG	1 cut(s)	10
Eco88I	CYCGRG	1 cut(s)	790
EcoRII	CCWGG	2 cut(s)	817, 1516
EcoT14I	CCWWGG	1 cut(s)	1008
EcoT22I	ATGCAT	2 cut(s)	1023, 1102
EgeI	GGCGCC	1 cut(s)	873
EheI	GGCGCC	1 cut(s)	873
ErhI	CCWWGG	1 cut(s)	1008
FaeI	CATG	4 cut(s)	1025, 1325, 1342, 1664
FalI	AAGNNNNNCTT	2 cut(s)	389, 421
FaqI	GGGAC	1 cut(s)	348
FatI	CATG	4 cut(s)	1021, 1321, 1338, 1660
FauNDI	CATATG	3 cut(s)	1102, 1285, 1651
FbaI	TGATCA	2 cut(s)	783, 1557
FokI	GGATG	9 cut(s)	556, 723, 891, 984, 1133, 1163, 1345, 1477, 1677
FspBI	CTAG	4 cut(s)	392, 1245, 1295, 1623
GlaI	GCGC	4 cut(s)	137, 873, 1406, 1483
GsaI	CCCAGC	1 cut(s)	1672
HaeII	RGCGCY	3 cut(s)	139, 875, 1408
HaeIII	GGCC	6 cut(s)	417, 432, 551, 618, 1013, 1644
HhaI	GCGC	4 cut(s)	138, 874, 1407, 1484
Hin1I	GRCGYC	2 cut(s)	143, 872
Hin1II	CATG	4 cut(s)	1025, 1325, 1342, 1664
Hin6I	GCGC	4 cut(s)	136, 872, 1405, 1482
HinP1I	GCGC	4 cut(s)	136, 872, 1405, 1482
HincII	GTYRAC	1 cut(s)	853
HindII	GTYRAC	1 cut(s)	853
HindIII	AAGCTT	1 cut(s)	1187
HinfI	GANTC	5 cut(s)	446, 707, 1004, 1201, 1263
HphI	GGTGA	7 cut(s)	359, 554, 623, 817, 850, 1141, 1558
Hpy166II	GTNNAC	3 cut(s)	147, 702, 853
Hpy188I	TCNGA	9 cut(s)	67, 81, 423, 451, 505, 783, 845, 897, 1495
Hpy188III	TCNNGA	3 cut(s)	763, 1001, 1552
Hpy8I	GTNNAC	3 cut(s)	147, 702, 853
Hpy99I	CGWCG	2 cut(s)	158, 380
HpyAV	CCTTC	5 cut(s)	109, 260, 829, 1248, 1655
HpyCH4III	ACNGT	3 cut(s)	86, 300, 494
HpyCH4IV	ACGT	6 cut(s)	143, 153, 231, 279, 314, 1607
HpyF10VI	GCNNNNNNNGC	9 cut(s)	126, 135, 182, 392, 397, 461, 928, 1142, 1397
HpyF3I	CTNAG	9 cut(s)	10, 320, 502, 636, 959, 1002, 1190, 1401, 1461
HpySE526I	ACGT	6 cut(s)	143, 153, 231, 279, 314, 1607
Hsp92I	GRCGYC	2 cut(s)	143, 872
Hsp92II	CATG	4 cut(s)	1025, 1325, 1342, 1664
HspAI	GCGC	4 cut(s)	136, 872, 1405, 1482
KasI	GGCGCC	1 cut(s)	871
KpnI	GGTACC	1 cut(s)	126
KroI	GCCGGC	2 cut(s)	172, 428
KroNI	GCCGGC	2 cut(s)	174, 430
Ksp22I	TGATCA	2 cut(s)	783, 1557
Kzo9I	GATC	9 cut(s)	67, 217, 423, 723, 778, 783, 840, 1548, 1557
LguI	GCTCTTC	1 cut(s)	467
LmnI	GCTCC	4 cut(s)	190, 405, 814, 1397
Lsp1109I	GCAGC	7 cut(s)	33, 68, 194, 261, 1313, 1356, 1644
LweI	GCATC	7 cut(s)	378, 442, 578, 1006, 1231, 1288, 1655
MabI	ACCWGGT	1 cut(s)	1516
MaeI	CTAG	4 cut(s)	392, 1245, 1295, 1623
MaeII	ACGT	6 cut(s)	143, 153, 231, 279, 314, 1607
MaeIII	GTNAC	5 cut(s)	365, 745, 794, 1078, 1129
MalI	GATC	9 cut(s)	69, 219, 425, 725, 780, 785, 842, 1550, 1559
MboI	GATC	9 cut(s)	67, 217, 423, 723, 778, 783, 840, 1548, 1557
MhlI	GDGCHC	3 cut(s)	909, 924, 1161
MlsI	TGGCCA	1 cut(s)	551
MluCI	AATT	6 cut(s)	523, 692, 915, 952, 1047, 1465
MluNI	TGGCCA	1 cut(s)	551
Mly113I	GGCGCC	1 cut(s)	872
MlyI	GAGTC	2 cut(s)	701, 1013
MmeI	TCCRAC	1 cut(s)	1231
Mox20I	TGGCCA	1 cut(s)	551
Mph1103I	ATGCAT	2 cut(s)	1023, 1102
MroNI	GCCGGC	2 cut(s)	172, 428
MscI	TGGCCA	1 cut(s)	551
MseI	TTAA	3 cut(s)	102, 110, 1095
MslI	CAYNNNNRTG	1 cut(s)	917
Msp20I	TGGCCA	1 cut(s)	551
MspR9I	CCNGG	8 cut(s)	333, 620, 668, 791, 792, 819, 876, 1518
MvaI	CCWGG	2 cut(s)	819, 1518
MvnI	CGCG	1 cut(s)	386
MwoI	GCNNNNNNNGC	9 cut(s)	126, 135, 182, 392, 397, 461, 928, 1142, 1397
NaeI	GCCGGC	2 cut(s)	174, 430
NarI	GGCGCC	1 cut(s)	872
NciI	CCSGG	6 cut(s)	333, 620, 668, 791, 792, 876
NdeI	CATATG	3 cut(s)	1102, 1285, 1651
NdeII	GATC	9 cut(s)	67, 217, 423, 723, 778, 783, 840, 1548, 1557
NgoMIV	GCCGGC	2 cut(s)	172, 428
NheI	GCTAGC	1 cut(s)	391
NlaIII	CATG	4 cut(s)	1025, 1325, 1342, 1664
NlaIV	GGNNCC	5 cut(s)	124, 652, 816, 873, 1674
NmeAIII	GCCGAG	2 cut(s)	75, 225
NmuCI	GTSAC	3 cut(s)	365, 745, 1129
NsiI	ATGCAT	2 cut(s)	1023, 1102
NspI	RCATGY	2 cut(s)	1025, 1342
PaeI	GCATGC	1 cut(s)	1025
PceI	AGGCCT	1 cut(s)	1013
PciI	ACATGT	1 cut(s)	1338
PciSI	GCTCTTC	1 cut(s)	467
PdiI	GCCGGC	2 cut(s)	174, 430
PfeI	GAWTC	3 cut(s)	446, 1201, 1263
PflFI	GACNNNGTC	1 cut(s)	864
PflMI	CCANNNNNTGG	1 cut(s)	1274
PfoI	TCCNGGA	1 cut(s)	331
PleI	GAGTC	2 cut(s)	701, 1012
PluTI	GGCGCC	1 cut(s)	875
PpsI	GAGTC	2 cut(s)	701, 1012
Ppu21I	YACGTR	2 cut(s)	232, 280
PscI	ACATGT	1 cut(s)	1338
PshBI	ATTAAT	1 cut(s)	1095
PsiI	TTATAA	1 cut(s)	459
Psp1406I	AACGTT	1 cut(s)	1607
Psp6I	CCWGG	2 cut(s)	817, 1516
PspFI	CCCAGC	1 cut(s)	1668
PspGI	CCWGG	2 cut(s)	817, 1516
PspN4I	GGNNCC	5 cut(s)	124, 652, 816, 873, 1674
PspPI	GGNCC	4 cut(s)	240, 329, 651, 866
PstI	CTGCAG	1 cut(s)	860
PstNI	CAGNNNCTG	1 cut(s)	1204
PsyI	GACNNNGTC	1 cut(s)	864
RsaI	GTAC	8 cut(s)	124, 282, 317, 603, 701, 823, 983, 1583
RsaNI	GTAC	8 cut(s)	123, 281, 316, 602, 700, 822, 982, 1582
RseI	CAYNNNNRTG	1 cut(s)	917
SapI	GCTCTTC	1 cut(s)	467
SaqAI	TTAA	3 cut(s)	102, 110, 1095
Sau3AI	GATC	9 cut(s)	67, 217, 423, 723, 778, 783, 840, 1548, 1557
Sau96I	GGNCC	4 cut(s)	240, 329, 651, 866
SchI	GAGTC	2 cut(s)	701, 1013
ScrFI	CCNGG	8 cut(s)	333, 620, 668, 791, 792, 819, 876, 1518
SduI	GDGCHC	3 cut(s)	909, 924, 1161
SexAI	ACCWGGT	1 cut(s)	1516
SfaNI	GCATC	7 cut(s)	378, 442, 578, 1006, 1231, 1288, 1655
SfcI	CTRYAG	2 cut(s)	21, 856
SfoI	GGCGCC	1 cut(s)	873
SgrAI	CRCCGGYG	1 cut(s)	593
SinI	GGWCC	4 cut(s)	240, 329, 651, 866
SmaI	CCCGGG	1 cut(s)	792
SmiMI	CAYNNNNRTG	1 cut(s)	917
SphI	GCATGC	1 cut(s)	1025
Sse9I	AATT	6 cut(s)	523, 692, 915, 952, 1047, 1465
SseBI	AGGCCT	1 cut(s)	1013
SsiI	CCGC	5 cut(s)	120, 197, 250, 436, 465
SspDI	GGCGCC	1 cut(s)	871
SspMI	CTAG	4 cut(s)	392, 1245, 1295, 1623
StuI	AGGCCT	1 cut(s)	1013
StyD4I	CCNGG	8 cut(s)	331, 618, 666, 789, 790, 817, 874, 1516
StyI	CCWWGG	1 cut(s)	1008
TaaI	ACNGT	3 cut(s)	86, 300, 494
TaiI	ACGT	6 cut(s)	146, 156, 234, 282, 317, 1610
TaqI	TCGA	7 cut(s)	220, 375, 444, 696, 1272, 1513, 1553
TaqII	GACCGA	2 cut(s)	770, 917
TasI	AATT	6 cut(s)	523, 692, 915, 952, 1047, 1465
TatI	WGTACW	3 cut(s)	601, 699, 981
TauI	GCSGC	3 cut(s)	199, 253, 467
TfiI	GAWTC	3 cut(s)	446, 1201, 1263
Tru1I	TTAA	3 cut(s)	102, 110, 1095
Tru9I	TTAA	3 cut(s)	102, 110, 1095
TscAI	CASTG	9 cut(s)	34, 91, 250, 303, 640, 709, 1045, 1491, 1567
TseFI	GTSAC	3 cut(s)	365, 745, 1129
TseI	GCWGC	7 cut(s)	46, 56, 182, 274, 1301, 1344, 1657
Tsp45I	GTSAC	3 cut(s)	365, 745, 1129
TspDTI	ATGAA	8 cut(s)	485, 843, 875, 1081, 1119, 1200, 1332, 1488
TspGWI	ACGGA	2 cut(s)	353, 1587
TspMI	CCCGGG	1 cut(s)	790
TspRI	CASTG	9 cut(s)	34, 91, 250, 303, 640, 709, 1045, 1491, 1567
Tth111I	GACNNNGTC	1 cut(s)	864
Van91I	CCANNNNNTGG	1 cut(s)	1274
VpaK11BI	GGWCC	4 cut(s)	240, 329, 651, 866
VspI	ATTAAT	1 cut(s)	1095
XapI	RAATTY	2 cut(s)	692, 952
XceI	RCATGY	2 cut(s)	1025, 1342
XmaI	CCCGGG	1 cut(s)	790
XspI	CTAG	4 cut(s)	392, 1245, 1295, 1623
ZraI	GACGTC	1 cut(s)	144
Zsp2I	ATGCAT	2 cut(s)	1023, 1102

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.