FvH4_2g36960

breast cancer carboxy-terminal domain

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Reverse (-)
26979046 .. 26984218
5173 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g36960.t2

Sequence Viewer

Length: 1632 bp
ATGGGTGGAGTGGAAGTGATAAAGAGCAAAGGCTGTTCTAGACTGTCCGGTGGGTTATCTTCTCCGCTGCCTTCGTTTAAAGCTCAGAGAGCTTTTGGGCCAATGTCTCCGGCGGCAAACTCTACTGGGTCGGAGACGGTTGTCCGATCAAACGCACCGTTTTCCGGGCTTGTTATTTGCGTTACTGGGTTGTCCAAAGAAGCGAGGAAACAAGTTATGGAAGCAACTGGGAGATTGGGTGGGCAGTATAGCCCTCACTTGCATCCCCAATGTACCCATTTGGTGTTTTACAGCTTTGGTGGTCGCAAATTTGAGCATGCTTTCAAGCATGGATCAAAAAATGGTCTCTCTATCGTTACAATTGGGTGGTTTGTGGATAGTGTTAGGAAGAATGTGAGGCTGAGTGAATCACTCTATAGTATCAAGAGTATGGGACAGAATGGTATTCGTTTGGATGAGTTGAATAGGCTTGTTGGGTTTTCTGGTGCGGAAAATTCTTGTCTTCCTGTTGGTGCTTATGGAACCAAGCAGTTAAGCACGATTGAAGAACCACAATTTTCTGGAAGAGAGTTCAACTGTAACAGAAGTTCTGACTCTACTCTATCTGGTCTCTCCATGTATGTCGACTTGGATATATCAGCTGAACTGAGGAACAAGGTTATTCAGGCTATTAGTAGAGAGGGTGCCACGTTTGTAGATCAATGGTTTGTTGGTTCCCGAGCCAGTCATGTGGTGTGCGAAGGGTCTTCCAGCCGTAAATATCTTGGCCACTCTAGCAATATCGTTACACCACTGTGGGTTTTGAAGACAGTCAAGGAGAAGTATGTGCAAAGGCTTGTCCATATATCTGCAGATTTAGCCAGGCAAGTTGGTACAATGCTTGAAGATTTGCAGAATGGCATCGCAGATGAGGAAACAACTGAGCACAATGTCCCTGAAGATGCTCAGACTTACAGAAATAAAGCAAGCCTAGAAAAGAGGCAAAAGATTGTGAATTCTGCTAAAACTGGAGTTAGAAATCACCGTGGTCTTCGGATGCAGACTTGTCAAACCCCCATGCGTCCAATAACTCCTAGCAGCCTTCTGGATTCCATTTGCTGGTCAATTTCAGAGCCAACTTTGGCGGCATCCATCTACACCGAAACTTTCAGTTTTGAAGATGCTAGTGAACATCAAACGTCTGTATTTTTTGATGCAAAAGGTGATGCCAAGGATTCAGAAGCTTCATTTGCCAACTTGACTAGACCACTCAAGGAAAGTGAGAAATCGGAACTAATATTTAAAAACCACTTTCTTACCATCCTGTTCCCAATTGACCGATTTGCTGAGATGGGGCCATCCTCCAGAACGTTTTTCGGCAATGATGGGTTTACATGCTTGCAGGTGTTAGATCATATCTATGCATATTACCAGGAGAGCATGTCAGTCCACGAAATAGAGGCTGCAATTCACACAGACTCAAAACACGCGGATCGGCTTCGATCAGTGTACGCAAGTAAAGAAACAGCAGAACGTGGTTATGCGATTTTCAAACGAATCGACTTCCTAGGGAGTCGCAGAAGTTTTGAAATGCTGAAGCGTGTCAACGGAGACAACAACAGTAATGTATATGAGTTGATAATCAGAGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

544

Amino Acids

60.23

Weight (kDa)

8.58

Isoelectric Point (pI)

44.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BRCT PF00533 53 - 127 1.3e-11 BRCA1 C Terminus (BRCT) domain
PTCB-BRCT PF12738 57 - 123 1.4e-12 twin BRCT domain
DUF6699 PF20415 454 - 527 7.3e-08 Family of unknown function (DUF6699)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1372
Acc36I ACCTGC 1 cut(s) 1372
AccB1I GGYRCC 1 cut(s) 683
AccB7I CCANNNNNTGG 1 cut(s) 1098
AccI GTMKAC 1 cut(s) 624
AccII CGCG 1 cut(s) 1469
AciI CCGC 5 cut(s) 65, 113, 488, 1124, 1469
AclI AACGTT 1 cut(s) 1349
AclWI GGATC 2 cut(s) 340, 1479
AcoI YGGCCR 1 cut(s) 766
AcsI RAATTY 3 cut(s) 308, 493, 994
AcuI CTGAAG 2 cut(s) 957, 1595
AfaI GTAC 3 cut(s) 274, 874, 1490
AfiI CCNNNNNNNGG 2 cut(s) 164, 1098
AgsI TTSAA 9 cut(s) 325, 463, 545, 574, 805, 884, 1157, 1531, 1568
AjnI CCWGG 2 cut(s) 860, 1410
AleI CACNNNNGTG 1 cut(s) 793
AluBI AGCT 5 cut(s) 83, 92, 294, 641, 1223
AluI AGCT 5 cut(s) 83, 92, 294, 641, 1223
Alw21I GWGCWC 1 cut(s) 927
Alw26I GTCTC 5 cut(s) 111, 128, 350, 614, 1584
AlwI GGATC 2 cut(s) 340, 1479
Ama87I CYCGRG 1 cut(s) 717
AoxI GGCC 3 cut(s) 98, 766, 1334
ApeKI GCWGC 3 cut(s) 67, 1077, 1442
ApoI RAATTY 3 cut(s) 308, 493, 994
AspA2I CCTAGG 1 cut(s) 1546
AspS9I GGNCC 2 cut(s) 98, 1334
AsuC2I CCSGG 1 cut(s) 166
AsuHPI GGTGA 2 cut(s) 1013, 1214
AvaI CYCGRG 1 cut(s) 717
AvrII CCTAGG 1 cut(s) 1546
BalI TGGCCA 1 cut(s) 768
BanI GGYRCC 1 cut(s) 683
BbsI GAAGAC 4 cut(s) 494, 738, 812, 1022
Bbv12I GWGCWC 1 cut(s) 927
BbvI GCAGC 3 cut(s) 54, 1089, 1429
BccI CCATC 5 cut(s) 1139, 1307, 1324, 1345, 1358
BceAI ACGGC 1 cut(s) 738
BciT130I CCWGG 2 cut(s) 862, 1412
BcnI CCSGG 1 cut(s) 166
BcoDI GTCTC 5 cut(s) 111, 128, 350, 614, 1584
BfaI CTAG 7 cut(s) 39, 774, 971, 1074, 1164, 1242, 1547
BfmI CTRYAG 2 cut(s) 415, 849
BfuAI ACCTGC 1 cut(s) 1372
BisI GCNGC 5 cut(s) 68, 114, 1078, 1125, 1443
BlnI CCTAGG 1 cut(s) 1546
BlsI GCNGC 5 cut(s) 69, 115, 1079, 1126, 1444
Bme1390I CCNGG 3 cut(s) 166, 862, 1412
BmeT110I CYCGRG 1 cut(s) 717
BmgT120I GGNCC 2 cut(s) 98, 1334
BmiI GGNNCC 4 cut(s) 523, 685, 715, 1335
BmrFI CCNGG 3 cut(s) 166, 862, 1412
BmrI ACTGGG 3 cut(s) 135, 195, 237
BmsI GCATC 8 cut(s) 271, 909, 931, 1026, 1136, 1150, 1183, 1195
BmuI ACTGGG 3 cut(s) 135, 195, 237
BoxI GACNNNNGTC 1 cut(s) 140
BpiI GAAGAC 4 cut(s) 494, 738, 812, 1022
BpmI CTGGAG 2 cut(s) 1029, 1327
BpuEI CTTGAG 1 cut(s) 1235
BpuMI CCSGG 1 cut(s) 166
BsaI GGTCTC 2 cut(s) 350, 614
BsaJI CCNNGG 3 cut(s) 1024, 1209, 1546
BsaWI WCCGGW 1 cut(s) 47
BsaXI ACNNNNNCTCC 5 cut(s) 30, 223, 253, 1406, 1436
Bsc4I CCNNNNNNNGG 2 cut(s) 164, 1098
Bse1I ACTGG 5 cut(s) 130, 190, 232, 723, 1012
Bse3DI GCAATG 1 cut(s) 1366
BseBI CCWGG 2 cut(s) 862, 1412
BseDI CCNNGG 3 cut(s) 1024, 1209, 1546
BseGI GGATG 6 cut(s) 262, 460, 1041, 1127, 1299, 1337
BseLI CCNNNNNNNGG 2 cut(s) 164, 1098
BseMI GCAATG 1 cut(s) 1366
BseMII CTCAG 6 cut(s) 98, 392, 638, 912, 959, 1317
BseNI ACTGG 5 cut(s) 130, 190, 232, 723, 1012
BseXI GCAGC 3 cut(s) 54, 1089, 1429
Bsh1236I CGCG 1 cut(s) 1469
BshFI GGCC 3 cut(s) 100, 768, 1336
BshNI GGYRCC 1 cut(s) 683
BsiHKAI GWGCWC 1 cut(s) 927
BsiHKCI CYCGRG 1 cut(s) 717
BsiSI CCGG 3 cut(s) 48, 110, 165
BslFI GGGAC 2 cut(s) 447, 917
BslI CCNNNNNNNGG 2 cut(s) 164, 1098
BsmAI GTCTC 5 cut(s) 111, 128, 350, 614, 1584
BsmBI CGTCTC 1 cut(s) 128
BsmFI GGGAC 2 cut(s) 447, 917
BsnI GGCC 3 cut(s) 100, 768, 1336
Bso31I GGTCTC 2 cut(s) 350, 614
BsoBI CYCGRG 1 cut(s) 717
Bsp1286I GDGCHC 1 cut(s) 927
Bsp143I GATC 6 cut(s) 146, 332, 697, 1390, 1471, 1481
BspACI CCGC 5 cut(s) 65, 113, 488, 1124, 1469
BspANI GGCC 3 cut(s) 100, 768, 1336
BspCNI CTCAG 6 cut(s) 97, 393, 639, 913, 958, 1318
BspFNI CGCG 1 cut(s) 1469
BspLI GGNNCC 4 cut(s) 523, 685, 715, 1335
BspMAI CTGCAG 1 cut(s) 853
BspMI ACCTGC 1 cut(s) 1372
BspPI GGATC 2 cut(s) 340, 1479
BspT107I GGYRCC 1 cut(s) 683
BspTNI GGTCTC 2 cut(s) 350, 614
BsrDI GCAATG 1 cut(s) 1366
BsrI ACTGG 5 cut(s) 130, 190, 232, 723, 1012
BssECI CCNNGG 3 cut(s) 1024, 1209, 1546
BssMI GATC 6 cut(s) 146, 332, 697, 1390, 1471, 1481
BssT1I CCWWGG 2 cut(s) 1209, 1546
Bst2UI CCWGG 2 cut(s) 862, 1412
Bst4CI ACNGT 8 cut(s) 45, 139, 159, 578, 795, 811, 1025, 1601
Bst6I CTCTTC 1 cut(s) 559
BstC8I GCNNGC 3 cut(s) 318, 967, 1379
BstDEI CTNAG 6 cut(s) 84, 401, 647, 921, 945, 1326
BstDSI CCRYGG 1 cut(s) 1024
BstF5I GGATG 6 cut(s) 262, 460, 1041, 1127, 1299, 1337
BstFNI CGCG 1 cut(s) 1469
BstKTI GATC 6 cut(s) 149, 335, 700, 1393, 1474, 1484
BstMAI GTCTC 5 cut(s) 111, 128, 350, 614, 1584
BstMBI GATC 6 cut(s) 146, 332, 697, 1390, 1471, 1481
BstMWI GCNNNNNNNGC 4 cut(s) 89, 774, 857, 1229
BstNI CCWGG 2 cut(s) 862, 1412
BstNSI RCATGY 3 cut(s) 320, 1377, 1423
BstPAI GACNNNNGTC 1 cut(s) 140
BstSCI CCNGG 3 cut(s) 164, 860, 1410
BstSFI CTRYAG 2 cut(s) 415, 849
BstUI CGCG 1 cut(s) 1469
BstV1I GCAGC 3 cut(s) 54, 1089, 1429
BstV2I GAAGAC 4 cut(s) 494, 738, 812, 1022
BstXI CCANNNNNNTGG 1 cut(s) 730
BsuRI GGCC 3 cut(s) 100, 768, 1336
BtgI CCRYGG 1 cut(s) 1024
BtgZI GCGATG 1 cut(s) 886
BtsCI GGATG 6 cut(s) 262, 460, 1041, 1127, 1299, 1337
BtsIMutI CAGTG 2 cut(s) 791, 1491
BveI ACCTGC 1 cut(s) 1372
Cac8I GCNNGC 3 cut(s) 318, 967, 1379
Cfr13I GGNCC 2 cut(s) 98, 1334
CseI GACGC 1 cut(s) 1049
Csp6I GTAC 3 cut(s) 273, 873, 1489
CviAII CATG 7 cut(s) 317, 329, 616, 728, 1057, 1374, 1420
CviQI GTAC 3 cut(s) 273, 873, 1489
DdeI CTNAG 6 cut(s) 84, 401, 647, 921, 945, 1326
DpnI GATC 6 cut(s) 148, 334, 699, 1392, 1473, 1483
DpnII GATC 6 cut(s) 146, 332, 697, 1390, 1471, 1481
DraI TTTAAA 2 cut(s) 79, 1282
EaeI YGGCCR 1 cut(s) 766
Eam1104I CTCTTC 1 cut(s) 559
EarI CTCTTC 1 cut(s) 559
Eco130I CCWWGG 2 cut(s) 1209, 1546
Eco31I GGTCTC 2 cut(s) 350, 614
Eco57I CTGAAG 2 cut(s) 957, 1595
Eco88I CYCGRG 1 cut(s) 717
EcoRI GAATTC 1 cut(s) 994
EcoRII CCWGG 2 cut(s) 860, 1410
EcoT14I CCWWGG 2 cut(s) 1209, 1546
EcoT22I ATGCAT 1 cut(s) 1405
ErhI CCWWGG 2 cut(s) 1209, 1546
Esp3I CGTCTC 1 cut(s) 128
FaeI CATG 7 cut(s) 320, 332, 619, 731, 1060, 1377, 1423
FaqI GGGAC 2 cut(s) 447, 917
FatI CATG 7 cut(s) 316, 328, 615, 727, 1056, 1373, 1419
FblI GTMKAC 1 cut(s) 624
Fnu4HI GCNGC 5 cut(s) 68, 114, 1078, 1125, 1443
FokI GGATG 6 cut(s) 249, 467, 1048, 1114, 1286, 1324
Fsp4HI GCNGC 5 cut(s) 68, 114, 1078, 1125, 1443
FspBI CTAG 7 cut(s) 39, 774, 971, 1074, 1164, 1242, 1547
GluI GCNGC 5 cut(s) 68, 114, 1078, 1125, 1443
GsuI CTGGAG 2 cut(s) 1029, 1327
HaeIII GGCC 3 cut(s) 100, 768, 1336
HapII CCGG 3 cut(s) 48, 110, 165
HgaI GACGC 1 cut(s) 1049
Hin1II CATG 7 cut(s) 320, 332, 619, 731, 1060, 1377, 1423
HincII GTYRAC 2 cut(s) 625, 1585
HindII GTYRAC 2 cut(s) 625, 1585
HindIII AAGCTT 1 cut(s) 1221
HinfI GANTC 7 cut(s) 407, 593, 1088, 1214, 1457, 1536, 1552
HpaII CCGG 3 cut(s) 48, 110, 165
HphI GGTGA 2 cut(s) 1013, 1214
Hpy166II GTNNAC 6 cut(s) 625, 1169, 1371, 1429, 1489, 1585
Hpy188III TCNNGA 6 cut(s) 39, 424, 561, 717, 1085, 1344
Hpy8I GTNNAC 6 cut(s) 625, 1169, 1371, 1429, 1489, 1585
HpyAV CCTTC 3 cut(s) 81, 734, 1091
HpyCH4III ACNGT 8 cut(s) 45, 139, 159, 578, 795, 811, 1025, 1601
HpyCH4IV ACGT 4 cut(s) 689, 1178, 1349, 1513
HpyCH4V TGCA 9 cut(s) 262, 829, 851, 892, 1039, 1196, 1381, 1403, 1445
HpyF10VI GCNNNNNNNGC 4 cut(s) 89, 774, 857, 1229
HpyF3I CTNAG 6 cut(s) 84, 401, 647, 921, 945, 1326
HpySE526I ACGT 4 cut(s) 689, 1178, 1349, 1513
Hsp92II CATG 7 cut(s) 320, 332, 619, 731, 1060, 1377, 1423
Kzo9I GATC 6 cut(s) 146, 332, 697, 1390, 1471, 1481
Lsp1109I GCAGC 3 cut(s) 54, 1089, 1429
LweI GCATC 8 cut(s) 271, 909, 931, 1026, 1136, 1150, 1183, 1195
MaeI CTAG 7 cut(s) 39, 774, 971, 1074, 1164, 1242, 1547
MaeII ACGT 4 cut(s) 689, 1178, 1349, 1513
MaeIII GTNAC 4 cut(s) 181, 355, 578, 784
MalI GATC 6 cut(s) 148, 334, 699, 1392, 1473, 1483
MboI GATC 6 cut(s) 146, 332, 697, 1390, 1471, 1481
MfeI CAATTG 2 cut(s) 360, 1311
MhlI GDGCHC 1 cut(s) 927
MlsI TGGCCA 1 cut(s) 768
MluCI AATT 8 cut(s) 308, 360, 493, 554, 994, 1104, 1311, 1446
MluNI TGGCCA 1 cut(s) 768
MlyI GAGTC 3 cut(s) 587, 1451, 1561
MmeI TCCRAC 1 cut(s) 111
MnlI CCTC 9 cut(s) 198, 264, 390, 642, 673, 904, 972, 1351, 1432
Mox20I TGGCCA 1 cut(s) 768
Mph1103I ATGCAT 1 cut(s) 1405
MscI TGGCCA 1 cut(s) 768
MseI TTAA 3 cut(s) 78, 533, 1281
MslI CAYNNNNRTG 2 cut(s) 793, 1398
Msp20I TGGCCA 1 cut(s) 768
MspA1I CMGCKG 2 cut(s) 67, 641
MspI CCGG 3 cut(s) 48, 110, 165
MspR9I CCNGG 3 cut(s) 166, 862, 1412
MunI CAATTG 2 cut(s) 360, 1311
MvaI CCWGG 2 cut(s) 862, 1412
MvnI CGCG 1 cut(s) 1469
MwoI GCNNNNNNNGC 4 cut(s) 89, 774, 857, 1229
NciI CCSGG 1 cut(s) 166
NdeII GATC 6 cut(s) 146, 332, 697, 1390, 1471, 1481
NlaIII CATG 7 cut(s) 320, 332, 619, 731, 1060, 1377, 1423
NlaIV GGNNCC 4 cut(s) 523, 685, 715, 1335
NsiI ATGCAT 1 cut(s) 1405
NspI RCATGY 3 cut(s) 320, 1377, 1423
OliI CACNNNNGTG 1 cut(s) 793
PaeI GCATGC 1 cut(s) 320
PaqCI CACCTGC 1 cut(s) 1372
PfeI GAWTC 4 cut(s) 407, 1088, 1214, 1536
PflMI CCANNNNNTGG 1 cut(s) 1098
PkrI GCNGC 5 cut(s) 69, 115, 1079, 1126, 1444
PleI GAGTC 3 cut(s) 587, 1451, 1560
PpsI GAGTC 3 cut(s) 587, 1451, 1560
PshAI GACNNNNGTC 1 cut(s) 140
Psp1406I AACGTT 1 cut(s) 1349
Psp6I CCWGG 2 cut(s) 860, 1410
PspGI CCWGG 2 cut(s) 860, 1410
PspN4I GGNNCC 4 cut(s) 523, 685, 715, 1335
PspPI GGNCC 2 cut(s) 98, 1334
PsrI GAACNNNNNNTAC 2 cut(s) 571, 603
PstI CTGCAG 1 cut(s) 853
PvuII CAGCTG 1 cut(s) 641
RsaI GTAC 3 cut(s) 274, 874, 1490
RsaNI GTAC 3 cut(s) 273, 873, 1489
RseI CAYNNNNRTG 2 cut(s) 793, 1398
SalI GTCGAC 1 cut(s) 623
SaqAI TTAA 3 cut(s) 78, 533, 1281
SatI GCNGC 5 cut(s) 68, 114, 1078, 1125, 1443
Sau3AI GATC 6 cut(s) 146, 332, 697, 1390, 1471, 1481
Sau96I GGNCC 2 cut(s) 98, 1334
SchI GAGTC 3 cut(s) 587, 1451, 1561
ScrFI CCNGG 3 cut(s) 166, 862, 1412
SduI GDGCHC 1 cut(s) 927
SfaNI GCATC 8 cut(s) 271, 909, 931, 1026, 1136, 1150, 1183, 1195
SfcI CTRYAG 2 cut(s) 415, 849
SmiMI CAYNNNNRTG 2 cut(s) 793, 1398
SmlI CTYRAG 1 cut(s) 1250
SmoI CTYRAG 1 cut(s) 1250
SphI GCATGC 1 cut(s) 320
Sse9I AATT 8 cut(s) 308, 360, 493, 554, 994, 1104, 1311, 1446
SsiI CCGC 5 cut(s) 65, 113, 488, 1124, 1469
SspI AATATT 1 cut(s) 1278
SspMI CTAG 7 cut(s) 39, 774, 971, 1074, 1164, 1242, 1547
StyD4I CCNGG 3 cut(s) 164, 860, 1410
StyI CCWWGG 2 cut(s) 1209, 1546
TaaI ACNGT 8 cut(s) 45, 139, 159, 578, 795, 811, 1025, 1601
TaiI ACGT 4 cut(s) 692, 1181, 1352, 1516
TaqI TCGA 3 cut(s) 624, 1480, 1539
TaqII GACCGA 1 cut(s) 1332
TasI AATT 8 cut(s) 308, 360, 493, 554, 994, 1104, 1311, 1446
TauI GCSGC 2 cut(s) 116, 1127
TfiI GAWTC 4 cut(s) 407, 1088, 1214, 1536
Tru1I TTAA 3 cut(s) 78, 533, 1281
Tru9I TTAA 3 cut(s) 78, 533, 1281
TscAI CASTG 2 cut(s) 798, 1491
TseI GCWGC 3 cut(s) 67, 1077, 1442
TspDTI ATGAA 1 cut(s) 1215
TspGWI ACGGA 1 cut(s) 1602
TspRI CASTG 2 cut(s) 798, 1491
Van91I CCANNNNNTGG 1 cut(s) 1098
XapI RAATTY 3 cut(s) 308, 493, 994
XbaI TCTAGA 1 cut(s) 38
XceI RCATGY 3 cut(s) 320, 1377, 1423
XmaJI CCTAGG 1 cut(s) 1546
XmiI GTMKAC 1 cut(s) 624
XspI CTAG 7 cut(s) 39, 774, 971, 1074, 1164, 1242, 1547
Zsp2I ATGCAT 1 cut(s) 1405
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.