Rmu_sc0003120.1_g000002

breast cancer carboxy-terminal domain

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003120.1
Physical Location & Seq
Reverse (-)
3865 .. 7412
3548 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003120.1_g000002.1.cds

Sequence Viewer

Length: 1641 bp
atgggtggagtggaagtgataaagagcaagggttgttctagattgtctggtggtttatcttctccgttgccttcgtttaaggttcagaaaacttttgggccaatgtctccggcagccaactctattgggtcagggacggtcgtccgatcaaacgcaccgttttccgggcttgttatatgcgttactggtttgtctaaagaagcgaggaaacaagtgatggaagcaactgagagattgggagggcagtatagccctcacttgcatccccaatgcttgtgtggattctttaacaagtgttacagctttggtggtcgcaaatttgagcatgctctgaagcatggatcgagaaatggcctctctattgttacgattgggtggtttgtggatagtgttaggaagaatgtgaggctgagtgaatcactctatagtatcaagagtttgggacagaatggtattcgtttggatgagttgaataggcttgttgggttttctggtacggaaaattcttgtcttcctgttgctgctcatggaaccaagcagttaagcacgattgaagaaccacaattttctggaagagagtctaactgtaacagaagttctgattctactctatccggtcactccatgtatgtcgacttggatatatcagctgaactgaggaacaaggttattcaggctgctagtagagagggtgccacattcctggatcaatggtttgttggttgccgagccagtcatgtggtgtgtgaagggtcttccagccgtaaatatcttggccactctagcaatatcgttacaccactgtgggttttgaaaacagtcaaggagaagtatgtgcaaaggcttgtgtatatgtctgcagacttggcccggcaagttggtatgatacttgaagatttgcaaaatggcaatgcagatgaggaaacaactgagcaaaatgtccctgaagatgctcagacttacagaaatatagcaaaccttgagaagaggcaaaagattgtgaattctgctaaaactggggttagaaatcgccgtggtcttcgaatgcagacctgtcaaacccccatgcgtccaataactcctagcagccttctggattccatttgctggtcaatttcagagccaacttcggtgacgtccatctacaccgagactttcagttctgaagatgttggtgaccatcaaacatctgtattctttgatgcaaaaggtgatggcaacgaatcagaagcttcgtttgcaaacttaactagaccactcaaggaaagtgagaaatcggaactgatatttaaaaaccattttcttaccatccttttcccaattgaccgatttgctgagatggggccatcctccagaacgtttttcagcaatgatgggtttacatgcttgcaggtgttagatcatatctatgcatattaccaggagagcatgtcagtccaggaaatagaggctgcaattcacacagactcgaagcacgcagatcggcttcgatcagtgtatgcaagtaaagaaacagcagaacgcggttatgcaattttcaaacggatcgactttctagggagtcgcagaagttttgaaatgttgaagcgtgttaacggagacaacaacagtaatgtatatgagttgttaatcagagcctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

546

Amino Acids

60.58

Weight (kDa)

8.48

Isoelectric Point (pI)

49.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1381
AatII GACGTC 1 cut(s) 1139
Acc36I ACCTGC 1 cut(s) 1381
AccB1I GGYRCC 1 cut(s) 692
AccB7I CCANNNNNTGG 1 cut(s) 1107
AccI GTMKAC 1 cut(s) 633
AccII CGCG 1 cut(s) 1524
AciI CCGC 1 cut(s) 1524
AclI AACGTT 1 cut(s) 1358
AclWI GGATC 3 cut(s) 349, 714, 1553
AcoI YGGCCR 1 cut(s) 775
AcsI RAATTY 3 cut(s) 317, 502, 1003
AcuI CTGAAG 3 cut(s) 353, 966, 1185
AcyI GRCGYC 1 cut(s) 1136
AfaI GTAC 1 cut(s) 496
AfiI CCNNNNNNNGG 2 cut(s) 164, 1107
AgsI TTSAA 7 cut(s) 472, 554, 814, 893, 1540, 1577, 1585
AjnI CCWGG 3 cut(s) 702, 1419, 1437
AleI CACNNNNGTG 1 cut(s) 802
AluBI AGCT 3 cut(s) 303, 650, 1232
AluI AGCT 3 cut(s) 303, 650, 1232
Alw26I GTCTC 3 cut(s) 111, 1145, 1593
AlwI GGATC 3 cut(s) 349, 714, 1553
AoxI GGCC 5 cut(s) 98, 352, 775, 867, 1343
ApeKI GCWGC 5 cut(s) 113, 521, 677, 1086, 1451
ApoI RAATTY 3 cut(s) 317, 502, 1003
AspS9I GGNCC 3 cut(s) 98, 868, 1343
AsuC2I CCSGG 2 cut(s) 166, 871
AsuHPI GGTGA 3 cut(s) 1144, 1187, 1223
AsuII TTCGAA 1 cut(s) 1042
BalI TGGCCA 1 cut(s) 777
BanI GGYRCC 1 cut(s) 692
BbsI GAAGAC 3 cut(s) 503, 747, 1031
BbvI GCAGC 5 cut(s) 125, 508, 664, 1098, 1438
BccI CCATC 8 cut(s) 211, 1148, 1188, 1208, 1316, 1333, 1354, 1367
BceAI ACGGC 2 cut(s) 747, 1017
BcgI CGANNNNNNTGC 2 cut(s) 1463, 1497
BciT130I CCWGG 3 cut(s) 704, 1421, 1439
BcnI CCSGG 2 cut(s) 166, 871
BcoDI GTCTC 3 cut(s) 111, 1145, 1593
BfaI CTAG 6 cut(s) 39, 681, 783, 1083, 1251, 1556
BfmI CTRYAG 2 cut(s) 424, 858
BfuAI ACCTGC 1 cut(s) 1381
BisI GCNGC 5 cut(s) 114, 522, 678, 1087, 1452
BlsI GCNGC 5 cut(s) 115, 523, 679, 1088, 1453
Bme1390I CCNGG 5 cut(s) 166, 704, 871, 1421, 1439
BmgT120I GGNCC 3 cut(s) 98, 868, 1343
BmiI GGNNCC 3 cut(s) 532, 694, 1344
BmrFI CCNGG 5 cut(s) 166, 704, 871, 1421, 1439
BmrI ACTGGG 1 cut(s) 1026
BmsI GCATC 3 cut(s) 271, 940, 1192
BmuI ACTGGG 1 cut(s) 1026
BoxI GACNNNNGTC 1 cut(s) 140
BpiI GAAGAC 3 cut(s) 503, 747, 1031
BpmI CTGGAG 1 cut(s) 1336
Bpu14I TTCGAA 1 cut(s) 1042
BpuEI CTTGAG 2 cut(s) 1001, 1244
BpuMI CCSGG 2 cut(s) 166, 871
BsaHI GRCGYC 1 cut(s) 1136
BsaJI CCNNGG 1 cut(s) 1033
BsaWI WCCGGW 1 cut(s) 614
BsaXI ACNNNNNCTCC 3 cut(s) 30, 1415, 1445
Bsc4I CCNNNNNNNGG 2 cut(s) 164, 1107
Bse1I ACTGG 3 cut(s) 190, 732, 1021
Bse3DI GCAATG 2 cut(s) 916, 1375
BseBI CCWGG 3 cut(s) 704, 1421, 1439
BseDI CCNNGG 1 cut(s) 1033
BseGI GGATG 4 cut(s) 262, 469, 1308, 1346
BseLI CCNNNNNNNGG 2 cut(s) 164, 1107
BseMI GCAATG 2 cut(s) 916, 1375
BseMII CTCAG 6 cut(s) 219, 401, 647, 921, 968, 1326
BseNI ACTGG 3 cut(s) 190, 732, 1021
BseXI GCAGC 5 cut(s) 125, 508, 664, 1098, 1438
Bsh1236I CGCG 1 cut(s) 1524
Bsh1285I CGRYCG 1 cut(s) 141
BshFI GGCC 5 cut(s) 100, 354, 777, 869, 1345
BshNI GGYRCC 1 cut(s) 692
BsiEI CGRYCG 1 cut(s) 141
BsiSI CCGG 4 cut(s) 110, 165, 615, 871
BslFI GGGAC 3 cut(s) 148, 456, 926
BslI CCNNNNNNNGG 2 cut(s) 164, 1107
BsmAI GTCTC 3 cut(s) 111, 1145, 1593
BsmFI GGGAC 3 cut(s) 148, 456, 926
BsmI GAATGC 1 cut(s) 1050
BsnI GGCC 5 cut(s) 100, 354, 777, 869, 1345
Bsp119I TTCGAA 1 cut(s) 1042
Bsp143I GATC 7 cut(s) 146, 341, 706, 1399, 1480, 1490, 1545
BspACI CCGC 1 cut(s) 1524
BspANI GGCC 5 cut(s) 100, 354, 777, 869, 1345
BspCNI CTCAG 6 cut(s) 220, 402, 648, 922, 967, 1327
BspFNI CGCG 1 cut(s) 1524
BspLI GGNNCC 3 cut(s) 532, 694, 1344
BspMAI CTGCAG 1 cut(s) 862
BspMI ACCTGC 1 cut(s) 1381
BspPI GGATC 3 cut(s) 349, 714, 1553
BspT104I TTCGAA 1 cut(s) 1042
BspT107I GGYRCC 1 cut(s) 692
BsrDI GCAATG 2 cut(s) 916, 1375
BsrI ACTGG 3 cut(s) 190, 732, 1021
BssECI CCNNGG 1 cut(s) 1033
BssMI GATC 7 cut(s) 146, 341, 706, 1399, 1480, 1490, 1545
BssNI GRCGYC 1 cut(s) 1136
Bst2UI CCWGG 3 cut(s) 704, 1421, 1439
Bst4CI ACNGT 6 cut(s) 139, 159, 587, 804, 820, 1610
Bst6I CTCTTC 2 cut(s) 568, 980
BstACI GRCGYC 1 cut(s) 1136
BstBI TTCGAA 1 cut(s) 1042
BstC8I GCNNGC 3 cut(s) 327, 1388, 1476
BstDEI CTNAG 6 cut(s) 228, 410, 656, 930, 954, 1335
BstDSI CCRYGG 1 cut(s) 1033
BstEII GGTNACC 1 cut(s) 1175
BstF5I GGATG 4 cut(s) 262, 469, 1308, 1346
BstFNI CGCG 1 cut(s) 1524
BstKTI GATC 7 cut(s) 149, 344, 709, 1402, 1483, 1493, 1548
BstMAI GTCTC 3 cut(s) 111, 1145, 1593
BstMBI GATC 7 cut(s) 146, 341, 706, 1399, 1480, 1490, 1545
BstMCI CGRYCG 1 cut(s) 141
BstMWI GCNNNNNNNGC 3 cut(s) 783, 866, 1238
BstNI CCWGG 3 cut(s) 704, 1421, 1439
BstNSI RCATGY 3 cut(s) 329, 1386, 1432
BstPAI GACNNNNGTC 1 cut(s) 140
BstPI GGTNACC 1 cut(s) 1175
BstSCI CCNGG 5 cut(s) 164, 702, 869, 1419, 1437
BstSFI CTRYAG 2 cut(s) 424, 858
BstUI CGCG 1 cut(s) 1524
BstV1I GCAGC 5 cut(s) 125, 508, 664, 1098, 1438
BstV2I GAAGAC 3 cut(s) 503, 747, 1031
BstXI CCANNNNNNTGG 2 cut(s) 703, 739
BsuRI GGCC 5 cut(s) 100, 354, 777, 869, 1345
BtgI CCRYGG 1 cut(s) 1033
BtsCI GGATG 4 cut(s) 262, 469, 1308, 1346
BtsIMutI CAGTG 2 cut(s) 800, 1500
BveI ACCTGC 1 cut(s) 1381
Cac8I GCNNGC 3 cut(s) 327, 1388, 1476
Cfr13I GGNCC 3 cut(s) 98, 868, 1343
CseI GACGC 1 cut(s) 1058
Csp6I GTAC 1 cut(s) 495
CviAII CATG 8 cut(s) 326, 338, 527, 625, 737, 1066, 1383, 1429
CviQI GTAC 1 cut(s) 495
DdeI CTNAG 6 cut(s) 228, 410, 656, 930, 954, 1335
DpnI GATC 7 cut(s) 148, 343, 708, 1401, 1482, 1492, 1547
DpnII GATC 7 cut(s) 146, 341, 706, 1399, 1480, 1490, 1545
DraI TTTAAA 1 cut(s) 1291
EaeI YGGCCR 1 cut(s) 775
Eam1104I CTCTTC 2 cut(s) 568, 980
EarI CTCTTC 2 cut(s) 568, 980
Eco57I CTGAAG 3 cut(s) 353, 966, 1185
Eco91I GGTNACC 1 cut(s) 1175
EcoO65I GGTNACC 1 cut(s) 1175
EcoRI GAATTC 1 cut(s) 1003
EcoRII CCWGG 3 cut(s) 702, 1419, 1437
EcoT22I ATGCAT 1 cut(s) 1414
FaeI CATG 8 cut(s) 329, 341, 530, 628, 740, 1069, 1386, 1432
FaqI GGGAC 3 cut(s) 148, 456, 926
FatI CATG 8 cut(s) 325, 337, 526, 624, 736, 1065, 1382, 1428
FblI GTMKAC 1 cut(s) 633
Fnu4HI GCNGC 5 cut(s) 114, 522, 678, 1087, 1452
FokI GGATG 4 cut(s) 249, 476, 1295, 1333
Fsp4HI GCNGC 5 cut(s) 114, 522, 678, 1087, 1452
FspBI CTAG 6 cut(s) 39, 681, 783, 1083, 1251, 1556
GluI GCNGC 5 cut(s) 114, 522, 678, 1087, 1452
GsuI CTGGAG 1 cut(s) 1336
HaeIII GGCC 5 cut(s) 100, 354, 777, 869, 1345
HapII CCGG 4 cut(s) 110, 165, 615, 871
HgaI GACGC 1 cut(s) 1058
Hin1I GRCGYC 1 cut(s) 1136
Hin1II CATG 8 cut(s) 329, 341, 530, 628, 740, 1069, 1386, 1432
HincII GTYRAC 2 cut(s) 634, 1594
HindII GTYRAC 2 cut(s) 634, 1594
HindIII AAGCTT 1 cut(s) 1230
HinfI GANTC 8 cut(s) 282, 416, 578, 602, 1097, 1223, 1466, 1561
HpaI GTTAAC 1 cut(s) 1594
HpaII CCGG 4 cut(s) 110, 165, 615, 871
HphI GGTGA 3 cut(s) 1144, 1187, 1223
Hpy166II GTNNAC 3 cut(s) 634, 1380, 1594
Hpy188III TCNNGA 6 cut(s) 39, 345, 433, 570, 1094, 1353
Hpy8I GTNNAC 3 cut(s) 634, 1380, 1594
HpyAV CCTTC 3 cut(s) 81, 743, 1100
HpyCH4III ACNGT 6 cut(s) 139, 159, 587, 804, 820, 1610
HpyCH4IV ACGT 2 cut(s) 1136, 1358
HpyF10VI GCNNNNNNNGC 3 cut(s) 783, 866, 1238
HpyF3I CTNAG 6 cut(s) 228, 410, 656, 930, 954, 1335
HpySE526I ACGT 2 cut(s) 1136, 1358
Hsp92I GRCGYC 1 cut(s) 1136
Hsp92II CATG 8 cut(s) 329, 341, 530, 628, 740, 1069, 1386, 1432
KspAI GTTAAC 1 cut(s) 1594
Kzo9I GATC 7 cut(s) 146, 341, 706, 1399, 1480, 1490, 1545
Lsp1109I GCAGC 5 cut(s) 125, 508, 664, 1098, 1438
LweI GCATC 3 cut(s) 271, 940, 1192
MaeI CTAG 6 cut(s) 39, 681, 783, 1083, 1251, 1556
MaeII ACGT 2 cut(s) 1136, 1358
MaeIII GTNAC 8 cut(s) 181, 296, 364, 587, 617, 793, 1132, 1175
MalI GATC 7 cut(s) 148, 343, 708, 1401, 1482, 1492, 1547
MboI GATC 7 cut(s) 146, 341, 706, 1399, 1480, 1490, 1545
MfeI CAATTG 1 cut(s) 1320
MlsI TGGCCA 1 cut(s) 777
MluCI AATT 8 cut(s) 317, 502, 563, 1003, 1113, 1320, 1455, 1533
MluNI TGGCCA 1 cut(s) 777
MlyI GAGTC 3 cut(s) 587, 1460, 1570
Mox20I TGGCCA 1 cut(s) 777
Mph1103I ATGCAT 1 cut(s) 1414
MscI TGGCCA 1 cut(s) 777
MseI TTAA 7 cut(s) 78, 288, 542, 1247, 1290, 1593, 1628
MslI CAYNNNNRTG 2 cut(s) 802, 1407
Msp20I TGGCCA 1 cut(s) 777
MspA1I CMGCKG 1 cut(s) 650
MspI CCGG 4 cut(s) 110, 165, 615, 871
MspR9I CCNGG 5 cut(s) 166, 704, 871, 1421, 1439
MunI CAATTG 1 cut(s) 1320
Mva1269I GAATGC 1 cut(s) 1050
MvaI CCWGG 3 cut(s) 704, 1421, 1439
MvnI CGCG 1 cut(s) 1524
MwoI GCNNNNNNNGC 3 cut(s) 783, 866, 1238
NciI CCSGG 2 cut(s) 166, 871
NdeII GATC 7 cut(s) 146, 341, 706, 1399, 1480, 1490, 1545
NlaIII CATG 8 cut(s) 329, 341, 530, 628, 740, 1069, 1386, 1432
NlaIV GGNNCC 3 cut(s) 532, 694, 1344
NmeAIII GCCGAG 1 cut(s) 752
NmuCI GTSAC 3 cut(s) 617, 1132, 1175
NsiI ATGCAT 1 cut(s) 1414
NspI RCATGY 3 cut(s) 329, 1386, 1432
NspV TTCGAA 1 cut(s) 1042
OliI CACNNNNGTG 1 cut(s) 802
PaeI GCATGC 1 cut(s) 329
PaqCI CACCTGC 1 cut(s) 1381
PctI GAATGC 1 cut(s) 1050
PfeI GAWTC 5 cut(s) 282, 416, 602, 1097, 1223
PflMI CCANNNNNTGG 1 cut(s) 1107
PfoI TCCNGGA 2 cut(s) 702, 1437
PkrI GCNGC 5 cut(s) 115, 523, 679, 1088, 1453
PleI GAGTC 3 cut(s) 586, 1460, 1569
PpsI GAGTC 3 cut(s) 586, 1460, 1569
PshAI GACNNNNGTC 1 cut(s) 140
Psp1406I AACGTT 1 cut(s) 1358
Psp6I CCWGG 3 cut(s) 702, 1419, 1437
PspEI GGTNACC 1 cut(s) 1175
PspGI CCWGG 3 cut(s) 702, 1419, 1437
PspN4I GGNNCC 3 cut(s) 532, 694, 1344
PspPI GGNCC 3 cut(s) 98, 868, 1343
PsrI GAACNNNNNNTAC 2 cut(s) 580, 612
PstI CTGCAG 1 cut(s) 862
PvuII CAGCTG 1 cut(s) 650
RsaI GTAC 1 cut(s) 496
RsaNI GTAC 1 cut(s) 495
RseI CAYNNNNRTG 2 cut(s) 802, 1407
SalI GTCGAC 1 cut(s) 632
SaqAI TTAA 7 cut(s) 78, 288, 542, 1247, 1290, 1593, 1628
SatI GCNGC 5 cut(s) 114, 522, 678, 1087, 1452
Sau3AI GATC 7 cut(s) 146, 341, 706, 1399, 1480, 1490, 1545
Sau96I GGNCC 3 cut(s) 98, 868, 1343
SchI GAGTC 3 cut(s) 587, 1460, 1570
ScrFI CCNGG 5 cut(s) 166, 704, 871, 1421, 1439
SfaNI GCATC 3 cut(s) 271, 940, 1192
SfcI CTRYAG 2 cut(s) 424, 858
SfuI TTCGAA 1 cut(s) 1042
SmiMI CAYNNNNRTG 2 cut(s) 802, 1407
SmlI CTYRAG 2 cut(s) 980, 1259
SmoI CTYRAG 2 cut(s) 980, 1259
SphI GCATGC 1 cut(s) 329
Sse9I AATT 8 cut(s) 317, 502, 563, 1003, 1113, 1320, 1455, 1533
SsiI CCGC 1 cut(s) 1524
SspMI CTAG 6 cut(s) 39, 681, 783, 1083, 1251, 1556
StyD4I CCNGG 5 cut(s) 164, 702, 869, 1419, 1437
TaaI ACNGT 6 cut(s) 139, 159, 587, 804, 820, 1610
TaiI ACGT 2 cut(s) 1139, 1361
TaqI TCGA 6 cut(s) 344, 633, 1042, 1469, 1489, 1548
TaqII GACCGA 1 cut(s) 1341
TasI AATT 8 cut(s) 317, 502, 563, 1003, 1113, 1320, 1455, 1533
TfiI GAWTC 5 cut(s) 282, 416, 602, 1097, 1223
Tru1I TTAA 7 cut(s) 78, 288, 542, 1247, 1290, 1593, 1628
Tru9I TTAA 7 cut(s) 78, 288, 542, 1247, 1290, 1593, 1628
TscAI CASTG 2 cut(s) 807, 1500
TseFI GTSAC 3 cut(s) 617, 1132, 1175
TseI GCWGC 5 cut(s) 113, 521, 677, 1086, 1451
Tsp45I GTSAC 3 cut(s) 617, 1132, 1175
TspGWI ACGGA 4 cut(s) 54, 512, 1558, 1611
TspRI CASTG 2 cut(s) 807, 1500
Van91I CCANNNNNTGG 1 cut(s) 1107
XapI RAATTY 3 cut(s) 317, 502, 1003
XbaI TCTAGA 1 cut(s) 38
XceI RCATGY 3 cut(s) 329, 1386, 1432
XcmI CCANNNNNNNNNTGG 1 cut(s) 275
XmiI GTMKAC 1 cut(s) 633
XspI CTAG 6 cut(s) 39, 681, 783, 1083, 1251, 1556
ZraI GACGTC 1 cut(s) 1137
Zsp2I ATGCAT 1 cut(s) 1414
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.