Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0006642

Physical Location & Seq

Genomic Coordinates Forward (+)

2762198 .. 2764155

Gene Structure 1958 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g04660.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1098 bp

ATGCGTTTGGATGAGTTGAATAGGCTCGTTGGGTTTAGTGGCACCGAAAATTCTTGTCTACCTATTGGTGTTCGTGGAGTCAAGCAATTGGACACAAATGACGAACCACATGTATCTTTTCGTGGAAGGGAGGCTATCAGAAGTACTGACTCTAGTCACTCTACTTTGTCCGGTCACTCCATTTATGTCGACTTAGACATTTCATCTGAACTGAGGAATAAGGTTACCGAAGCTGCTAGTAGAGAGGGTGCCACATTTGTAGATCAATGGTTTGTTGGTTGCAAAGCCAGTCATGTAGTGTGTGAAGGGTCTTCAAGCCGTAAATATCTTGGCCACTCTAGCAATATTGTTACAGTGAGTCCTGCAAGGCATTCTCTGGGAACTGATGAGGGAAAAGTCCCCGAAGATGTTCAAGCTTATAGAAATAAAGCAAGCCATGGAAAGAGGCTACAGATTGTGAATTCTGCTAAAACTGGGGTTAGAAATCGTCGTGGTCTTCGTATGCAGACTTGCCAAACTCCAATGCGACCAATAACCCCCAGCAGCCTTTTGGATTCAATCTGCTGGTCAATCTCTGAACCAACATCAACGGCTTCAATCTACACCGAGAGTGTAAGTGTTGAAGATGGTAGTGAACATCATGCATCTGTATTCTTCGATGCAAAAGGTGATGGCAAGGATTCAGAAGCGTCGTTTGCAAACTTAACCAGACCGCTCAAGGAAAGTGAGAAATCTGAATTGATATTCAAAAACCATTTTCTTACTATCATGTTCCCTGTCGATCGATTTGCTGAGATGGGGCCATCTTCTAGAACATTTTTCAGCGACAACGGGTTTACATGCTTGCAAGTGTTGGATCATATCTATAAATTTTATCAGGAGAACATGTCAGCCCATGAAATTGAGGCTGCAATCCACACCGACTCAAGGCATGCTGATCGGCTCCGATCAGTGTACTCCAGTAAAGAAACAGCAGAACGCGGGTTTGCAGTTCTCAGGCGGATTGAGTTTCTAGGCAGTCGTAAAAGTTTTGAAATGTTGAAGCGCGTCAACGGAGACAACAACAGCAATGTGTATGAGCTGTTAATTAGAGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PTCB-BRCT

Protein Analysis

366

Amino Acids

40.74

Weight (kDa)

6.93

Isoelectric Point (pI)

47.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006642)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26270 AT3G43930 AT3G43930 AT3G43930
fragaria_vesca	FvH4_2g36960 FvH4_2g36960 FvH4_2g36960 FvH4_2g36960 FvH4_2g36960
malus_domestica	MD08G1046400.v1.1 MD15G1047400.v1.1
prunus_persica	Prupe.1G401800_v2.0.a1 Prupe.1G401800_v2.0.a1 Prupe.1G401800_v2.0.a1
pyrus_communis	pycom08g03850 pycom15g04660
rosa_chinensis	RchiOBHm_Chr6g0304801
rosa_laevigata	RLG00000010948
rosa_multiflora	Rmu_sc0003120.1_g000002
rosa_roxburghii	Rroxscaffold_7G00163460
rosa_rugosa	Rorug06G0334900
rosa_samantha	Rh6AG446600 Rh6BG455000 Rh6CG460100 Rh6DG447000
rosa_wichuraiana	Rw6G038860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	41, 248
AccBSI	CCGCTC	1 cut(s)	715
AccI	GTMKAC	2 cut(s)	58, 189
AccII	CGCG	2 cut(s)	981, 1047
AciI	CCGC	3 cut(s)	713, 981, 1000
AclWI	GGATC	1 cut(s)	864
AcoI	YGGCCR	1 cut(s)	331
AcsI	RAATTY	3 cut(s)	49, 460, 869
AfaI	GTAC	2 cut(s)	145, 956
AfiI	CCNNNNNNNGG	1 cut(s)	927
AflIII	ACRYGT	2 cut(s)	109, 885
AgsI	TTSAA	9 cut(s)	19, 315, 413, 558, 597, 623, 748, 1034, 1042
AluBI	AGCT	3 cut(s)	233, 416, 1081
AluI	AGCT	3 cut(s)	233, 416, 1081
Alw26I	GTCTC	1 cut(s)	1050
AlwI	GGATC	1 cut(s)	864
AoxI	GGCC	2 cut(s)	331, 800
ApeKI	GCWGC	3 cut(s)	233, 543, 908
ApoI	RAATTY	3 cut(s)	49, 460, 869
Asp700I	GAANNNNTTC	1 cut(s)	408
AspLEI	GCGC	1 cut(s)	1047
AspS9I	GGNCC	1 cut(s)	800
AsuHPI	GGTGA	1 cut(s)	680
BalI	TGGCCA	1 cut(s)	333
BanI	GGYRCC	2 cut(s)	41, 248
BbsI	GAAGAC	2 cut(s)	303, 488
BbvI	GCAGC	3 cut(s)	220, 555, 895
BccI	CCATC	4 cut(s)	620, 665, 790, 811
BceAI	ACGGC	2 cut(s)	303, 606
BcgI	CGANNNNNNTGC	4 cut(s)	770, 804, 920, 954
BcoDI	GTCTC	1 cut(s)	1050
BfaI	CTAG	5 cut(s)	153, 237, 339, 810, 1013
BfmI	CTRYAG	1 cut(s)	449
BisI	GCNGC	3 cut(s)	234, 544, 909
BlsI	GCNGC	3 cut(s)	235, 545, 910
BmcAI	AGTACT	1 cut(s)	145
BmgT120I	GGNCC	1 cut(s)	800
BmiI	GGNNCC	4 cut(s)	43, 250, 801, 944
BmrI	ACTGGG	1 cut(s)	483
BmsI	GCATC	2 cut(s)	649, 653
BmuI	ACTGGG	1 cut(s)	483
BoxI	GACNNNNGTC	1 cut(s)	153
BpiI	GAAGAC	2 cut(s)	303, 488
BpmI	CTGGAG	1 cut(s)	943
BpuEI	CTTGAG	2 cut(s)	701, 910
Bsa29I	ATCGAT	1 cut(s)	784
BsaJI	CCNNGG	1 cut(s)	436
BsaWI	WCCGGW	1 cut(s)	170
BsaXI	ACNNNNNCTCC	2 cut(s)	872, 902
Bsc4I	CCNNNNNNNGG	1 cut(s)	927
Bse1I	ACTGG	3 cut(s)	288, 478, 960
Bse3DI	GCAATG	1 cut(s)	1075
BseCI	ATCGAT	1 cut(s)	784
BseDI	CCNNGG	1 cut(s)	436
BseGI	GGATG	1 cut(s)	16
BseLI	CCNNNNNNNGG	1 cut(s)	927
BseMI	GCAATG	1 cut(s)	1075
BseMII	CTCAG	3 cut(s)	203, 783, 1009
BseNI	ACTGG	3 cut(s)	288, 478, 960
BseXI	GCAGC	3 cut(s)	220, 555, 895
BseYI	CCCAGC	1 cut(s)	539
Bsh1236I	CGCG	2 cut(s)	981, 1047
Bsh1285I	CGRYCG	1 cut(s)	784
BshFI	GGCC	2 cut(s)	333, 802
BshNI	GGYRCC	2 cut(s)	41, 248
BshVI	ATCGAT	1 cut(s)	784
BsiEI	CGRYCG	1 cut(s)	784
BsiSI	CCGG	1 cut(s)	171
BslFI	GGGAC	1 cut(s)	383
BslI	CCNNNNNNNGG	1 cut(s)	927
BsmAI	GTCTC	1 cut(s)	1050
BsmFI	GGGAC	1 cut(s)	383
BsmI	GAATGC	1 cut(s)	370
BsnI	GGCC	2 cut(s)	333, 802
Bsp143I	GATC	5 cut(s)	262, 781, 856, 937, 947
Bsp19I	CCATGG	1 cut(s)	436
BspACI	CCGC	3 cut(s)	713, 981, 1000
BspANI	GGCC	2 cut(s)	333, 802
BspCNI	CTCAG	3 cut(s)	204, 784, 1008
BspDI	ATCGAT	1 cut(s)	784
BspFNI	CGCG	2 cut(s)	981, 1047
BspLI	GGNNCC	4 cut(s)	43, 250, 801, 944
BspPI	GGATC	1 cut(s)	864
BspT107I	GGYRCC	2 cut(s)	41, 248
BsrBI	CCGCTC	1 cut(s)	715
BsrDI	GCAATG	1 cut(s)	1075
BsrI	ACTGG	3 cut(s)	288, 478, 960
BssECI	CCNNGG	1 cut(s)	436
BssMI	GATC	5 cut(s)	262, 781, 856, 937, 947
BssT1I	CCWWGG	1 cut(s)	436
Bst4CI	ACNGT	1 cut(s)	355
BstC8I	GCNNGC	3 cut(s)	433, 845, 933
BstDEI	CTNAG	4 cut(s)	193, 212, 792, 995
BstDSI	CCRYGG	1 cut(s)	436
BstEII	GGTNACC	1 cut(s)	223
BstF5I	GGATG	1 cut(s)	16
BstFNI	CGCG	2 cut(s)	981, 1047
BstHHI	GCGC	1 cut(s)	1047
BstKTI	GATC	5 cut(s)	265, 784, 859, 940, 950
BstMAI	GTCTC	1 cut(s)	1050
BstMBI	GATC	5 cut(s)	262, 781, 856, 937, 947
BstMCI	CGRYCG	1 cut(s)	784
BstMWI	GCNNNNNNNGC	2 cut(s)	339, 695
BstNSI	RCATGY	4 cut(s)	113, 843, 889, 935
BstPAI	GACNNNNGTC	1 cut(s)	153
BstPI	GGTNACC	1 cut(s)	223
BstSFI	CTRYAG	1 cut(s)	449
BstUI	CGCG	2 cut(s)	981, 1047
BstV1I	GCAGC	3 cut(s)	220, 555, 895
BstV2I	GAAGAC	2 cut(s)	303, 488
Bsu15I	ATCGAT	1 cut(s)	784
BsuRI	GGCC	2 cut(s)	333, 802
BsuTUI	ATCGAT	1 cut(s)	784
BtgI	CCRYGG	1 cut(s)	436
BtsCI	GGATG	1 cut(s)	16
BtsIMutI	CAGTG	2 cut(s)	360, 957
Cac8I	GCNNGC	3 cut(s)	433, 845, 933
CfoI	GCGC	1 cut(s)	1047
Cfr13I	GGNCC	1 cut(s)	800
ClaI	ATCGAT	1 cut(s)	784
CseI	GACGC	2 cut(s)	678, 1036
Csp6I	GTAC	2 cut(s)	144, 955
CviAII	CATG	9 cut(s)	110, 293, 437, 641, 769, 840, 886, 896, 932
CviQI	GTAC	2 cut(s)	144, 955
DdeI	CTNAG	4 cut(s)	193, 212, 792, 995
DpnI	GATC	5 cut(s)	264, 783, 858, 939, 949
DpnII	GATC	5 cut(s)	262, 781, 856, 937, 947
EaeI	YGGCCR	1 cut(s)	331
EciI	GGCGGA	1 cut(s)	1015
Eco130I	CCWWGG	1 cut(s)	436
Eco91I	GGTNACC	1 cut(s)	223
EcoO65I	GGTNACC	1 cut(s)	223
EcoRI	GAATTC	1 cut(s)	460
EcoT14I	CCWWGG	1 cut(s)	436
EcoT22I	ATGCAT	1 cut(s)	646
ErhI	CCWWGG	1 cut(s)	436
FaeI	CATG	9 cut(s)	113, 296, 440, 644, 772, 843, 889, 899, 935
FaqI	GGGAC	1 cut(s)	383
FatI	CATG	9 cut(s)	109, 292, 436, 640, 768, 839, 885, 895, 931
FauI	CCCGC	1 cut(s)	974
FblI	GTMKAC	2 cut(s)	58, 189
Fnu4HI	GCNGC	3 cut(s)	234, 544, 909
FokI	GGATG	1 cut(s)	23
Fsp4HI	GCNGC	3 cut(s)	234, 544, 909
FspBI	CTAG	5 cut(s)	153, 237, 339, 810, 1013
GlaI	GCGC	1 cut(s)	1046
GluI	GCNGC	3 cut(s)	234, 544, 909
GsaI	CCCAGC	1 cut(s)	543
GsuI	CTGGAG	1 cut(s)	943
HaeIII	GGCC	2 cut(s)	333, 802
HapII	CCGG	1 cut(s)	171
HgaI	GACGC	2 cut(s)	678, 1036
HhaI	GCGC	1 cut(s)	1047
Hin1II	CATG	9 cut(s)	113, 296, 440, 644, 772, 843, 889, 899, 935
Hin6I	GCGC	1 cut(s)	1045
HinP1I	GCGC	1 cut(s)	1045
HincII	GTYRAC	2 cut(s)	190, 1051
HindII	GTYRAC	2 cut(s)	190, 1051
HindIII	AAGCTT	1 cut(s)	414
HinfI	GANTC	6 cut(s)	78, 149, 358, 554, 680, 923
HpaII	CCGG	1 cut(s)	171
HphI	GGTGA	1 cut(s)	680
Hpy166II	GTNNAC	6 cut(s)	59, 190, 635, 837, 955, 1051
Hpy188I	TCNGA	6 cut(s)	140, 208, 577, 685, 736, 947
Hpy188III	TCNNGA	2 cut(s)	810, 878
Hpy8I	GTNNAC	6 cut(s)	59, 190, 635, 837, 955, 1051
Hpy99I	CGWCG	2 cut(s)	492, 694
HpyAV	CCTTC	2 cut(s)	120, 299
HpyCH4III	ACNGT	1 cut(s)	355
HpyCH4V	TGCA	9 cut(s)	282, 365, 505, 644, 662, 698, 847, 911, 989
HpyF10VI	GCNNNNNNNGC	2 cut(s)	339, 695
HpyF3I	CTNAG	4 cut(s)	193, 212, 792, 995
Hsp92II	CATG	9 cut(s)	113, 296, 440, 644, 772, 843, 889, 899, 935
HspAI	GCGC	1 cut(s)	1045
Kzo9I	GATC	5 cut(s)	262, 781, 856, 937, 947
LmnI	GCTCC	1 cut(s)	948
Lsp1109I	GCAGC	3 cut(s)	220, 555, 895
LweI	GCATC	2 cut(s)	649, 653
MaeI	CTAG	5 cut(s)	153, 237, 339, 810, 1013
MaeIII	GTNAC	4 cut(s)	155, 173, 223, 349
MalI	GATC	5 cut(s)	264, 783, 858, 939, 949
MbiI	CCGCTC	1 cut(s)	715
MboI	GATC	5 cut(s)	262, 781, 856, 937, 947
MboII	GAAGA	6 cut(s)	303, 416, 488, 635, 646, 798
MfeI	CAATTG	1 cut(s)	86
MlsI	TGGCCA	1 cut(s)	333
MluCI	AATT	7 cut(s)	49, 86, 460, 737, 869, 900, 1086
MluNI	TGGCCA	1 cut(s)	333
MlyI	GAGTC	4 cut(s)	87, 143, 367, 917
MmeI	TCCRAC	1 cut(s)	834
MnlI	CCTC	6 cut(s)	124, 207, 238, 382, 438, 898
Mox20I	TGGCCA	1 cut(s)	333
Mph1103I	ATGCAT	1 cut(s)	646
MroXI	GAANNNNTTC	1 cut(s)	408
MscI	TGGCCA	1 cut(s)	333
MseI	TTAA	2 cut(s)	704, 1085
Msp20I	TGGCCA	1 cut(s)	333
MspI	CCGG	1 cut(s)	171
MunI	CAATTG	1 cut(s)	86
Mva1269I	GAATGC	1 cut(s)	370
MvnI	CGCG	2 cut(s)	981, 1047
MwoI	GCNNNNNNNGC	2 cut(s)	339, 695
NcoI	CCATGG	1 cut(s)	436
NdeII	GATC	5 cut(s)	262, 781, 856, 937, 947
NlaIII	CATG	9 cut(s)	113, 296, 440, 644, 772, 843, 889, 899, 935
NlaIV	GGNNCC	4 cut(s)	43, 250, 801, 944
NmuCI	GTSAC	2 cut(s)	155, 173
NsiI	ATGCAT	1 cut(s)	646
NspI	RCATGY	4 cut(s)	113, 843, 889, 935
PaeI	GCATGC	1 cut(s)	935
PciI	ACATGT	2 cut(s)	109, 885
PcsI	WCGNNNNNNNCGW	1 cut(s)	496
PctI	GAATGC	1 cut(s)	370
PdmI	GAANNNNTTC	1 cut(s)	408
PfeI	GAWTC	2 cut(s)	554, 680
PkrI	GCNGC	3 cut(s)	235, 545, 910
Ple19I	CGATCG	1 cut(s)	784
PleI	GAGTC	4 cut(s)	86, 143, 366, 917
PpsI	GAGTC	4 cut(s)	86, 143, 366, 917
PscI	ACATGT	2 cut(s)	109, 885
PshAI	GACNNNNGTC	1 cut(s)	153
PspEI	GGTNACC	1 cut(s)	223
PspFI	CCCAGC	1 cut(s)	539
PspN4I	GGNNCC	4 cut(s)	43, 250, 801, 944
PspPI	GGNCC	1 cut(s)	800
PvuI	CGATCG	1 cut(s)	784
RsaI	GTAC	2 cut(s)	145, 956
RsaNI	GTAC	2 cut(s)	144, 955
SalI	GTCGAC	1 cut(s)	188
SaqAI	TTAA	2 cut(s)	704, 1085
SatI	GCNGC	3 cut(s)	234, 544, 909
Sau3AI	GATC	5 cut(s)	262, 781, 856, 937, 947
Sau96I	GGNCC	1 cut(s)	800
ScaI	AGTACT	1 cut(s)	145
SchI	GAGTC	4 cut(s)	87, 143, 367, 917
SetI	ASST	6 cut(s)	64, 225, 235, 418, 670, 1083
SfaNI	GCATC	2 cut(s)	649, 653
SfcI	CTRYAG	1 cut(s)	449
SmlI	CTYRAG	2 cut(s)	716, 925
SmoI	CTYRAG	2 cut(s)	716, 925
SphI	GCATGC	1 cut(s)	935
Sse9I	AATT	7 cut(s)	49, 86, 460, 737, 869, 900, 1086
SsiI	CCGC	3 cut(s)	713, 981, 1000
SspI	AATATT	1 cut(s)	346
SspMI	CTAG	5 cut(s)	153, 237, 339, 810, 1013
StyI	CCWWGG	1 cut(s)	436
TaaI	ACNGT	1 cut(s)	355
TaqI	TCGA	4 cut(s)	189, 657, 780, 784
TasI	AATT	7 cut(s)	49, 86, 460, 737, 869, 900, 1086
TatI	WGTACW	2 cut(s)	143, 954
TfiI	GAWTC	2 cut(s)	554, 680
Tru1I	TTAA	2 cut(s)	704, 1085
Tru9I	TTAA	2 cut(s)	704, 1085
TscAI	CASTG	2 cut(s)	360, 957
TseFI	GTSAC	2 cut(s)	155, 173
TseI	GCWGC	3 cut(s)	233, 543, 908
Tsp45I	GTSAC	2 cut(s)	155, 173
TspDTI	ATGAA	2 cut(s)	192, 912
TspGWI	ACGGA	1 cut(s)	1068
TspRI	CASTG	2 cut(s)	360, 957
XapI	RAATTY	3 cut(s)	49, 460, 869
XbaI	TCTAGA	1 cut(s)	809
XceI	RCATGY	4 cut(s)	113, 843, 889, 935
XcmI	CCANNNNNNNNNTGG	1 cut(s)	547
XmiI	GTMKAC	2 cut(s)	58, 189
XmnI	GAANNNNTTC	1 cut(s)	408
XspI	CTAG	5 cut(s)	153, 237, 339, 810, 1013
ZrmI	AGTACT	1 cut(s)	145
Zsp2I	ATGCAT	1 cut(s)	646

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.