FvH4_3g00530

Protein of unknown function (DUF751)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0015477
Physical Location & Seq
Reverse (-)
273418 .. 274002
585 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g00530.t1

Sequence Viewer

Length: 585 bp
ATGTCTGCATTGAGCAGCTCCCAATTACACCTCTTGAAATGCACCACTACCACTCTAGCATATTCAACCTTCTCAGCAAACCCTTCATCTCGATTTCTCCACCCCATCTCCTCGTCACAACAAAATCACCCTCCTTCATATCCAACCGTATCATCCGCATCTTTACCTACTAGAAGATGCAACATTGGAAAAGCCAGTGTTAAATCCCTTGATCAAAAGCCATCCACCACCTCTGAGGATGGAAATGGGAATCACTCATCGAGGTTTCTAATAGTGGGAGCTGTTTCTGTAGGAGTGGCTATGTTGCTGATGGGGATTGATGATCAGCACAAGGCAATGGCTTTGGGACCAGAAGGGCCACTGATGGAAGAGTTTTGGGACAATGTAAGGAGATATGCATTGTATGCTCTCACTGTGAGTACAGGTGCTCTCTACACCGTCTTCCAACCTATATACGAGTTGTTGAAGAATCCCATCTCTGCTATTCTCGTTTTGGTCATTTTAGGGGGAGGTTTCTTCATTCTTACCCAAGTCGTTTCAGCCATGATTGGTGACACAGACTTCAGTTATCAATACCAATACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF751

Protein Analysis

195

Amino Acids

21.03

Weight (kDa)

6.95

Isoelectric Point (pI)

43.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF751 PF05421 125 - 184 9.5e-23 Protein of unknown function (DUF751)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015477)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G16410
fragaria_vesca FvH4_3g00530
malus_domestica MD00G1057700.v1.1 MD10G1337000.v1.1
prunus_persica Prupe.4G006400_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0000731
rosa_laevigata RLG00000030890
rosa_multiflora Rmu_sc0000255.1_g000003 Rmu_sc0011992.1_g000006
rosa_roxburghii Rroxscaffold_1G00075500
rosa_rugosa Rorug04G0386100
rosa_samantha Rh5AG006000 Rh5BG007800 Rh5CG006500 Rh5DG006500
rosa_wichuraiana Rw5G000610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 156
AcuI CTGAAG 1 cut(s) 547
AfaI GTAC 1 cut(s) 421
AgsI TTSAA 3 cut(s) 37, 66, 466
AluBI AGCT 2 cut(s) 18, 281
AluI AGCT 2 cut(s) 18, 281
Alw21I GWGCWC 1 cut(s) 430
AoxI GGCC 1 cut(s) 356
ApeKI GCWGC 1 cut(s) 15
AspS9I GGNCC 2 cut(s) 347, 356
AsuHPI GGTGA 2 cut(s) 119, 563
AvaII GGWCC 1 cut(s) 347
BbsI GAAGAC 1 cut(s) 433
Bbv12I GWGCWC 1 cut(s) 430
BbvI GCAGC 1 cut(s) 27
BccI CCATC 6 cut(s) 113, 229, 233, 304, 358, 482
BclI TGATCA 2 cut(s) 211, 322
BfaI CTAG 2 cut(s) 56, 171
BfmI CTRYAG 1 cut(s) 288
BisI GCNGC 1 cut(s) 16
BlsI GCNGC 1 cut(s) 17
Bme18I GGWCC 1 cut(s) 347
BmgT120I GGNCC 2 cut(s) 347, 356
BmiI GGNNCC 1 cut(s) 348
BmsI GCATC 2 cut(s) 167, 167
BpiI GAAGAC 1 cut(s) 433
BsaXI ACNNNNNCTCC 2 cut(s) 92, 122
Bse1I ACTGG 1 cut(s) 195
Bse3DI GCAATG 1 cut(s) 342
BseGI GGATG 3 cut(s) 152, 221, 244
BseMI GCAATG 1 cut(s) 342
BseMII CTCAG 2 cut(s) 87, 225
BseNI ACTGG 1 cut(s) 195
BseRI GAGGAG 1 cut(s) 100
BseXI GCAGC 1 cut(s) 27
BshFI GGCC 1 cut(s) 358
BsiHKAI GWGCWC 1 cut(s) 430
BslFI GGGAC 2 cut(s) 360, 392
BsmFI GGGAC 2 cut(s) 360, 392
BsnI GGCC 1 cut(s) 358
Bsp1286I GDGCHC 1 cut(s) 430
Bsp143I GATC 2 cut(s) 211, 322
BspACI CCGC 1 cut(s) 156
BspANI GGCC 1 cut(s) 358
BspCNI CTCAG 2 cut(s) 86, 226
BspLI GGNNCC 1 cut(s) 348
BsrDI GCAATG 1 cut(s) 342
BsrI ACTGG 1 cut(s) 195
BssMI GATC 2 cut(s) 211, 322
Bst4CI ACNGT 3 cut(s) 148, 415, 439
Bst6I CTCTTC 1 cut(s) 363
BstAPI GCANNNNNTGC 1 cut(s) 404
BstDEI CTNAG 2 cut(s) 73, 234
BstF5I GGATG 3 cut(s) 152, 221, 244
BstKTI GATC 2 cut(s) 214, 325
BstMBI GATC 2 cut(s) 211, 322
BstMWI GCNNNNNNNGC 1 cut(s) 404
BstSFI CTRYAG 1 cut(s) 288
BstV1I GCAGC 1 cut(s) 27
BstV2I GAAGAC 1 cut(s) 433
BsuRI GGCC 1 cut(s) 358
BtsCI GGATG 3 cut(s) 152, 221, 244
BtsIMutI CAGTG 3 cut(s) 202, 359, 411
Cfr13I GGNCC 2 cut(s) 347, 356
Csp6I GTAC 1 cut(s) 420
CviAII CATG 1 cut(s) 544
CviJI RGCY 8 cut(s) 18, 194, 220, 281, 299, 341, 358, 542
CviKI_1 RGCY 8 cut(s) 18, 194, 220, 281, 299, 341, 358, 542
CviQI GTAC 1 cut(s) 420
DdeI CTNAG 2 cut(s) 73, 234
DpnI GATC 2 cut(s) 213, 324
DpnII GATC 2 cut(s) 211, 322
Eam1104I CTCTTC 1 cut(s) 363
EarI CTCTTC 1 cut(s) 363
Eco47I GGWCC 1 cut(s) 347
Eco57I CTGAAG 1 cut(s) 547
EcoT22I ATGCAT 1 cut(s) 400
FaeI CATG 1 cut(s) 547
FaiI YATR 8 cut(s) 61, 139, 302, 396, 405, 452, 454, 545
FaqI GGGAC 2 cut(s) 360, 392
FatI CATG 1 cut(s) 543
FbaI TGATCA 2 cut(s) 211, 322
Fnu4HI GCNGC 1 cut(s) 16
FokI GGATG 3 cut(s) 139, 208, 251
Fsp4HI GCNGC 1 cut(s) 16
FspBI CTAG 2 cut(s) 56, 171
GluI GCNGC 1 cut(s) 16
HaeIII GGCC 1 cut(s) 358
Hin1II CATG 1 cut(s) 547
HinfI GANTC 2 cut(s) 250, 469
HphI GGTGA 2 cut(s) 119, 563
Hpy188I TCNGA 1 cut(s) 235
Hpy188III TCNNGA 2 cut(s) 34, 90
HpyAV CCTTC 4 cut(s) 79, 93, 144, 347
HpyCH4III ACNGT 3 cut(s) 148, 415, 439
HpyCH4V TGCA 4 cut(s) 8, 42, 180, 398
HpyF10VI GCNNNNNNNGC 1 cut(s) 404
HpyF3I CTNAG 2 cut(s) 73, 234
Hsp92II CATG 1 cut(s) 547
Ksp22I TGATCA 2 cut(s) 211, 322
Kzo9I GATC 2 cut(s) 211, 322
LmnI GCTCC 2 cut(s) 23, 278
LpnPI CCDG 3 cut(s) 208, 363, 408
Lsp1109I GCAGC 1 cut(s) 27
LweI GCATC 2 cut(s) 167, 167
MaeI CTAG 2 cut(s) 56, 171
MaeIII GTNAC 2 cut(s) 114, 551
MalI GATC 2 cut(s) 213, 324
MboI GATC 2 cut(s) 211, 322
MboII GAAGA 5 cut(s) 186, 380, 433, 478, 508
MhlI GDGCHC 1 cut(s) 430
MluCI AATT 1 cut(s) 23
MmeI TCCRAC 2 cut(s) 167, 469
MnlI CCTC 7 cut(s) 41, 121, 141, 229, 241, 255, 503
Mph1103I ATGCAT 1 cut(s) 400
MseI TTAA 1 cut(s) 201
MwoI GCNNNNNNNGC 1 cut(s) 404
NdeII GATC 2 cut(s) 211, 322
NlaIII CATG 1 cut(s) 547
NlaIV GGNNCC 1 cut(s) 348
NmuCI GTSAC 2 cut(s) 114, 551
NsiI ATGCAT 1 cut(s) 400
PfeI GAWTC 2 cut(s) 250, 469
PkrI GCNGC 1 cut(s) 17
PspN4I GGNNCC 1 cut(s) 348
PspPI GGNCC 2 cut(s) 347, 356
RsaI GTAC 1 cut(s) 421
RsaNI GTAC 1 cut(s) 420
SaqAI TTAA 1 cut(s) 201
SatI GCNGC 1 cut(s) 16
Sau3AI GATC 2 cut(s) 211, 322
Sau96I GGNCC 2 cut(s) 347, 356
SduI GDGCHC 1 cut(s) 430
SfaNI GCATC 2 cut(s) 167, 167
SfcI CTRYAG 1 cut(s) 288
SinI GGWCC 1 cut(s) 347
Sse9I AATT 1 cut(s) 23
SsiI CCGC 1 cut(s) 156
SspMI CTAG 2 cut(s) 56, 171
TaaI ACNGT 3 cut(s) 148, 415, 439
TaqI TCGA 2 cut(s) 91, 260
TasI AATT 1 cut(s) 23
TatI WGTACW 1 cut(s) 419
TfiI GAWTC 2 cut(s) 250, 469
Tru1I TTAA 1 cut(s) 201
Tru9I TTAA 1 cut(s) 201
TscAI CASTG 3 cut(s) 202, 366, 418
TseFI GTSAC 2 cut(s) 114, 551
TseI GCWGC 1 cut(s) 15
Tsp45I GTSAC 2 cut(s) 114, 551
TspDTI ATGAA 3 cut(s) 75, 126, 508
TspRI CASTG 3 cut(s) 202, 366, 418
VpaK11BI GGWCC 1 cut(s) 347
XspI CTAG 2 cut(s) 56, 171
Zsp2I ATGCAT 1 cut(s) 400
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.