FvH4_3g02270

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0015228
Physical Location & Seq
Reverse (-)
1155287 .. 1155909
623 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g02270.t1

Sequence Viewer

Length: 417 bp
ATGGCCGGTGTAAGGAAGCGAAATGGGTACTCGAAGATCGATAAGGAAGACCCGGAAGAGGTGATTCATCGACGAGCGCGGTTCTTGGTCTACAAGGTGATGCAGCAAGCCGAGTATCGGAGAAGGCCTTCAAATTTGAGGATTAGAATACGGAAATTGAAGGTTAAGTTCGGGATGAGACTGAAAAAGTTGAGGAAGAGCATGCTGCTTAGCATATCTGCAGCAAGAGTTGTCGTTTATAAACAAGTATCTAGGCAGTTGAAAACTTGCAAGAGCTTGTTTGGCCGCGTAGAGGAGCCATTGCCAGCCTTCAACGTTTGTAAATTTGCATGTATATGGATCTGTCTGACATGCTTAGATGAAACCCAGAACATGGCTGCATTATGTATTGAAGTGCTATTTTGCCTGGTTGGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

139

Amino Acids

16.14

Weight (kDa)

10.21

Isoelectric Point (pI)

49.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015228)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11655
fragaria_vesca FvH4_3g02270
malus_domestica MD00G1206700.v1.1 MD05G1344200.v1.1 MD10G1320200.v1.1
prunus_persica Prupe.4G022200_v2.0.a1
pyrus_communis pycom05g31360
rosa_chinensis RchiOBHm_Chr5g0003391
rosa_laevigata RLG00000031135
rosa_multiflora Rmu_co8199484.1_g000001 Rmu_sc0010917.1_g000001
rosa_roxburghii Rroxscaffold_1G00072630
rosa_rugosa Rorug04G0403000
rosa_samantha Rh5AG029600 Rh5CG031800
rosa_wichuraiana Rw5G002770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 240
AccB7I CCANNNNNTGG 1 cut(s) 373
AccI GTMKAC 1 cut(s) 90
AccII CGCG 2 cut(s) 79, 288
AciI CCGC 2 cut(s) 79, 286
AclI AACGTT 1 cut(s) 315
AclWI GGATC 1 cut(s) 347
AcoI YGGCCR 2 cut(s) 3, 283
AcsI RAATTY 2 cut(s) 133, 323
AfaI GTAC 1 cut(s) 29
AfiI CCNNNNNNNGG 5 cut(s) 12, 58, 117, 292, 373
AgsI TTSAA 5 cut(s) 132, 160, 262, 313, 392
AjnI CCWGG 1 cut(s) 405
AluBI AGCT 1 cut(s) 276
AluI AGCT 1 cut(s) 276
Alw26I GTCTC 1 cut(s) 172
AlwI GGATC 1 cut(s) 347
AoxI GGCC 3 cut(s) 3, 125, 283
ApeKI GCWGC 4 cut(s) 103, 205, 221, 377
ApoI RAATTY 2 cut(s) 133, 323
Asp700I GAANNNNTTC 1 cut(s) 127
AspLEI GCGC 1 cut(s) 79
AsuC2I CCSGG 1 cut(s) 53
AsuHPI GGTGA 2 cut(s) 73, 109
BbsI GAAGAC 1 cut(s) 54
BbvI GCAGC 4 cut(s) 115, 192, 233, 364
BciT130I CCWGG 1 cut(s) 407
BcnI CCSGG 1 cut(s) 53
BcoDI GTCTC 1 cut(s) 172
BfaI CTAG 1 cut(s) 252
BfmI CTRYAG 1 cut(s) 219
BisI GCNGC 5 cut(s) 104, 206, 222, 286, 378
BlpI GCTNAGC 1 cut(s) 209
BlsI GCNGC 5 cut(s) 105, 207, 223, 287, 379
Bme1390I CCNGG 2 cut(s) 53, 407
BmiI GGNNCC 1 cut(s) 297
BmrFI CCNGG 2 cut(s) 53, 407
BmsI GCATC 1 cut(s) 90
BpiI GAAGAC 1 cut(s) 54
Bpu1102I GCTNAGC 1 cut(s) 209
BpuMI CCSGG 1 cut(s) 53
Bsa29I ATCGAT 1 cut(s) 39
Bsc4I CCNNNNNNNGG 5 cut(s) 12, 58, 117, 292, 373
Bse118I RCCGGY 1 cut(s) 5
Bse3DI GCAATG 1 cut(s) 299
BseBI CCWGG 1 cut(s) 407
BseCI ATCGAT 1 cut(s) 39
BseGI GGATG 1 cut(s) 180
BseLI CCNNNNNNNGG 5 cut(s) 12, 58, 117, 292, 373
BseMI GCAATG 1 cut(s) 299
BseRI GAGGAG 1 cut(s) 308
BseXI GCAGC 4 cut(s) 115, 192, 233, 364
Bsh1236I CGCG 2 cut(s) 79, 288
BshFI GGCC 3 cut(s) 5, 127, 285
BshVI ATCGAT 1 cut(s) 39
BsiSI CCGG 2 cut(s) 6, 53
BslI CCNNNNNNNGG 5 cut(s) 12, 58, 117, 292, 373
BsmAI GTCTC 1 cut(s) 172
BsnI GGCC 3 cut(s) 5, 127, 285
Bsp143I GATC 2 cut(s) 36, 339
Bsp1720I GCTNAGC 1 cut(s) 209
BspACI CCGC 2 cut(s) 79, 286
BspANI GGCC 3 cut(s) 5, 127, 285
BspDI ATCGAT 1 cut(s) 39
BspFNI CGCG 2 cut(s) 79, 288
BspLI GGNNCC 1 cut(s) 297
BspMAI CTGCAG 1 cut(s) 223
BspPI GGATC 1 cut(s) 347
BspQI GCTCTTC 1 cut(s) 191
BsrDI GCAATG 1 cut(s) 299
BsrFI RCCGGY 1 cut(s) 5
BssAI RCCGGY 1 cut(s) 5
BssMI GATC 2 cut(s) 36, 339
Bst2UI CCWGG 1 cut(s) 407
Bst6I CTCTTC 2 cut(s) 51, 191
BstC8I GCNNGC 3 cut(s) 108, 203, 306
BstDEI CTNAG 2 cut(s) 209, 355
BstF5I GGATG 1 cut(s) 180
BstFNI CGCG 2 cut(s) 79, 288
BstHHI GCGC 1 cut(s) 79
BstKTI GATC 2 cut(s) 39, 342
BstMAI GTCTC 1 cut(s) 172
BstMBI GATC 2 cut(s) 36, 339
BstMWI GCNNNNNNNGC 1 cut(s) 282
BstNI CCWGG 1 cut(s) 407
BstNSI RCATGY 3 cut(s) 205, 333, 354
BstSCI CCNGG 2 cut(s) 51, 405
BstSFI CTRYAG 1 cut(s) 219
BstUI CGCG 2 cut(s) 79, 288
BstV1I GCAGC 4 cut(s) 115, 192, 233, 364
BstV2I GAAGAC 1 cut(s) 54
BstX2I RGATCY 1 cut(s) 339
BstYI RGATCY 1 cut(s) 339
Bsu15I ATCGAT 1 cut(s) 39
BsuRI GGCC 3 cut(s) 5, 127, 285
BsuTUI ATCGAT 1 cut(s) 39
BtsCI GGATG 1 cut(s) 180
Cac8I GCNNGC 3 cut(s) 108, 203, 306
CfoI GCGC 1 cut(s) 79
Cfr10I RCCGGY 1 cut(s) 5
ClaI ATCGAT 1 cut(s) 39
Csp6I GTAC 1 cut(s) 28
CviAII CATG 4 cut(s) 202, 330, 351, 373
CviJI RGCY 8 cut(s) 5, 110, 127, 276, 285, 298, 308, 377
CviKI_1 RGCY 8 cut(s) 5, 110, 127, 276, 285, 298, 308, 377
CviQI GTAC 1 cut(s) 28
DdeI CTNAG 2 cut(s) 209, 355
DpnI GATC 2 cut(s) 38, 341
DpnII GATC 2 cut(s) 36, 339
EaeI YGGCCR 2 cut(s) 3, 283
Eam1104I CTCTTC 2 cut(s) 51, 191
EarI CTCTTC 2 cut(s) 51, 191
Eco147I AGGCCT 1 cut(s) 127
EcoRII CCWGG 1 cut(s) 405
FaeI CATG 4 cut(s) 205, 333, 354, 376
FaiI YATR 9 cut(s) 203, 215, 240, 331, 335, 337, 352, 374, 385
FatI CATG 4 cut(s) 201, 329, 350, 372
FblI GTMKAC 1 cut(s) 90
Fnu4HI GCNGC 5 cut(s) 104, 206, 222, 286, 378
FokI GGATG 1 cut(s) 187
Fsp4HI GCNGC 5 cut(s) 104, 206, 222, 286, 378
FspBI CTAG 1 cut(s) 252
GlaI GCGC 1 cut(s) 78
GluI GCNGC 5 cut(s) 104, 206, 222, 286, 378
HaeIII GGCC 3 cut(s) 5, 127, 285
HapII CCGG 2 cut(s) 6, 53
HhaI GCGC 1 cut(s) 79
Hin1II CATG 4 cut(s) 205, 333, 354, 376
Hin6I GCGC 1 cut(s) 77
HinP1I GCGC 1 cut(s) 77
HinfI GANTC 1 cut(s) 64
HpaII CCGG 2 cut(s) 6, 53
HphI GGTGA 2 cut(s) 73, 109
Hpy166II GTNNAC 1 cut(s) 91
Hpy188I TCNGA 2 cut(s) 120, 348
Hpy188III TCNNGA 1 cut(s) 172
Hpy8I GTNNAC 1 cut(s) 91
Hpy99I CGWCG 1 cut(s) 75
HpyAV CCTTC 4 cut(s) 117, 138, 154, 319
HpyCH4IV ACGT 1 cut(s) 315
HpyCH4V TGCA 5 cut(s) 103, 221, 270, 329, 380
HpyF10VI GCNNNNNNNGC 1 cut(s) 282
HpyF3I CTNAG 2 cut(s) 209, 355
HpySE526I ACGT 1 cut(s) 315
Hsp92II CATG 4 cut(s) 205, 333, 354, 376
HspAI GCGC 1 cut(s) 77
Kzo9I GATC 2 cut(s) 36, 339
LguI GCTCTTC 1 cut(s) 191
LmnI GCTCC 1 cut(s) 295
LpnPI CCDG 5 cut(s) 19, 66, 318, 380, 392
Lsp1109I GCAGC 4 cut(s) 115, 192, 233, 364
LweI GCATC 1 cut(s) 90
MaeI CTAG 1 cut(s) 252
MaeII ACGT 1 cut(s) 315
MalI GATC 2 cut(s) 38, 341
MboI GATC 2 cut(s) 36, 339
MboII GAAGA 4 cut(s) 46, 59, 68, 208
MflI RGATCY 1 cut(s) 339
MluCI AATT 3 cut(s) 133, 155, 323
MmeI TCCRAC 1 cut(s) 391
MnlI CCTC 4 cut(s) 52, 132, 186, 286
MroXI GAANNNNTTC 1 cut(s) 127
MseI TTAA 1 cut(s) 165
MslI CAYNNNNRTG 1 cut(s) 334
MspI CCGG 2 cut(s) 6, 53
MspR9I CCNGG 2 cut(s) 53, 407
MvaI CCWGG 1 cut(s) 407
MvnI CGCG 2 cut(s) 79, 288
MwoI GCNNNNNNNGC 1 cut(s) 282
NciI CCSGG 1 cut(s) 53
NdeII GATC 2 cut(s) 36, 339
NlaIII CATG 4 cut(s) 205, 333, 354, 376
NlaIV GGNNCC 1 cut(s) 297
NmeAIII GCCGAG 1 cut(s) 136
NspI RCATGY 3 cut(s) 205, 333, 354
PaeI GCATGC 1 cut(s) 205
PceI AGGCCT 1 cut(s) 127
PciSI GCTCTTC 1 cut(s) 191
PdmI GAANNNNTTC 1 cut(s) 127
PfeI GAWTC 1 cut(s) 64
PflMI CCANNNNNTGG 1 cut(s) 373
PkrI GCNGC 5 cut(s) 105, 207, 223, 287, 379
PsiI TTATAA 1 cut(s) 240
Psp1406I AACGTT 1 cut(s) 315
Psp6I CCWGG 1 cut(s) 405
PspGI CCWGG 1 cut(s) 405
PspN4I GGNNCC 1 cut(s) 297
PstI CTGCAG 1 cut(s) 223
PsuI RGATCY 1 cut(s) 339
RsaI GTAC 1 cut(s) 29
RsaNI GTAC 1 cut(s) 28
RseI CAYNNNNRTG 1 cut(s) 334
SapI GCTCTTC 1 cut(s) 191
SaqAI TTAA 1 cut(s) 165
SatI GCNGC 5 cut(s) 104, 206, 222, 286, 378
Sau3AI GATC 2 cut(s) 36, 339
ScrFI CCNGG 2 cut(s) 53, 407
SetI ASST 5 cut(s) 63, 99, 165, 278, 318
SfaNI GCATC 1 cut(s) 90
SfcI CTRYAG 1 cut(s) 219
SmiMI CAYNNNNRTG 1 cut(s) 334
SphI GCATGC 1 cut(s) 205
Sse9I AATT 3 cut(s) 133, 155, 323
SseBI AGGCCT 1 cut(s) 127
SsiI CCGC 2 cut(s) 79, 286
SspMI CTAG 1 cut(s) 252
StuI AGGCCT 1 cut(s) 127
StyD4I CCNGG 2 cut(s) 51, 405
TaiI ACGT 1 cut(s) 318
TaqI TCGA 3 cut(s) 32, 39, 70
TasI AATT 3 cut(s) 133, 155, 323
TauI GCSGC 1 cut(s) 288
TfiI GAWTC 1 cut(s) 64
Tru1I TTAA 1 cut(s) 165
Tru9I TTAA 1 cut(s) 165
TseI GCWGC 4 cut(s) 103, 205, 221, 377
TspDTI ATGAA 2 cut(s) 56, 375
TspGWI ACGGA 1 cut(s) 166
Van91I CCANNNNNTGG 1 cut(s) 373
XapI RAATTY 2 cut(s) 133, 323
XceI RCATGY 3 cut(s) 205, 333, 354
XmiI GTMKAC 1 cut(s) 90
XmnI GAANNNNTTC 1 cut(s) 127
XspI CTAG 1 cut(s) 252
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.