Prupe.4G022200_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0015228
Physical Location & Seq
Reverse (-)
1057414 .. 1058004
591 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G022200.1

Sequence Viewer

Length: 336 bp
ATGGCTGTTATGATCAGAAAGCCATATGCCTACTCAAAGATGGACAAGGAGGACCCAGAAGAGGTCATTCATCGACGAGCGCAGTTCTTGATCTACAAAGTGTTGCAGCAAGCAGAAACGCGAAGAAGGCCGGTGAATTTGAGGATCAGAATACGAAAGTTGAAGCTGAAGATTGGGAGGAGATTAAAGAAGTTGAGGAAGAGCATGCTGCTAAGTATATCTGCAGCCAGAGTCTGCGTTTATAAGCAAGTTTTTAGTCAACTGAAAACTTGCAAGACTTTGTTTGGCCGCGGGGAGGGAACCATTGGCGCCAGTCTTCCAGCTTTGTTCACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

112

Amino Acids

12.95

Weight (kDa)

11.05

Isoelectric Point (pI)

49.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015228)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11655
fragaria_vesca FvH4_3g02270
malus_domestica MD00G1206700.v1.1 MD05G1344200.v1.1 MD10G1320200.v1.1
prunus_persica Prupe.4G022200_v2.0.a1
pyrus_communis pycom05g31360
rosa_chinensis RchiOBHm_Chr5g0003391
rosa_laevigata RLG00000031135
rosa_multiflora Rmu_co8199484.1_g000001 Rmu_sc0010917.1_g000001
rosa_roxburghii Rroxscaffold_1G00072630
rosa_rugosa Rorug04G0403000
rosa_samantha Rh5AG029600 Rh5CG031800
rosa_wichuraiana Rw5G002770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 243
AccB1I GGYRCC 1 cut(s) 308
AccII CGCG 2 cut(s) 121, 291
AciI CCGC 2 cut(s) 289, 291
AclWI GGATC 1 cut(s) 152
AcoI YGGCCR 1 cut(s) 286
AcsI RAATTY 1 cut(s) 136
AcuI CTGAAG 1 cut(s) 188
AcyI GRCGYC 1 cut(s) 309
AfiI CCNNNNNNNGG 2 cut(s) 61, 295
AgsI TTSAA 1 cut(s) 163
AluBI AGCT 2 cut(s) 166, 323
AluI AGCT 2 cut(s) 166, 323
AlwI GGATC 1 cut(s) 152
AlwNI CAGNNNCTG 1 cut(s) 234
AoxI GGCC 2 cut(s) 128, 286
ApeKI GCWGC 3 cut(s) 106, 208, 224
ApoI RAATTY 1 cut(s) 136
AspLEI GCGC 2 cut(s) 82, 311
AspS9I GGNCC 1 cut(s) 52
AsuHPI GGTGA 1 cut(s) 145
AvaII GGWCC 1 cut(s) 52
BanI GGYRCC 1 cut(s) 308
BbsI GAAGAC 1 cut(s) 308
BbvI GCAGC 3 cut(s) 118, 195, 236
BccI CCATC 1 cut(s) 34
BclI TGATCA 1 cut(s) 12
BfmI CTRYAG 1 cut(s) 222
BfoI RGCGCY 1 cut(s) 312
BisI GCNGC 4 cut(s) 107, 209, 225, 289
BlsI GCNGC 4 cut(s) 108, 210, 226, 290
Bme18I GGWCC 1 cut(s) 52
BmgT120I GGNCC 1 cut(s) 52
BmiI GGNNCC 3 cut(s) 54, 301, 310
BpiI GAAGAC 1 cut(s) 308
BsaHI GRCGYC 1 cut(s) 309
BsaJI CCNNGG 1 cut(s) 289
Bsc4I CCNNNNNNNGG 2 cut(s) 61, 295
Bse118I RCCGGY 1 cut(s) 130
Bse1I ACTGG 1 cut(s) 312
BseDI CCNNGG 1 cut(s) 289
BseLI CCNNNNNNNGG 2 cut(s) 61, 295
BseNI ACTGG 1 cut(s) 312
BseRI GAGGAG 1 cut(s) 193
BseXI GCAGC 3 cut(s) 118, 195, 236
Bsh1236I CGCG 2 cut(s) 121, 291
BshFI GGCC 2 cut(s) 130, 288
BshNI GGYRCC 1 cut(s) 308
BsiSI CCGG 1 cut(s) 131
BslI CCNNNNNNNGG 2 cut(s) 61, 295
BsnI GGCC 2 cut(s) 130, 288
Bsp143I GATC 3 cut(s) 12, 90, 144
BspACI CCGC 2 cut(s) 289, 291
BspANI GGCC 2 cut(s) 130, 288
BspFNI CGCG 2 cut(s) 121, 291
BspLI GGNNCC 3 cut(s) 54, 301, 310
BspMAI CTGCAG 1 cut(s) 226
BspPI GGATC 1 cut(s) 152
BspQI GCTCTTC 1 cut(s) 194
BspT107I GGYRCC 1 cut(s) 308
BsrFI RCCGGY 1 cut(s) 130
BsrI ACTGG 1 cut(s) 312
BssAI RCCGGY 1 cut(s) 130
BssECI CCNNGG 1 cut(s) 289
BssMI GATC 3 cut(s) 12, 90, 144
BssNI GRCGYC 1 cut(s) 309
Bst6I CTCTTC 2 cut(s) 54, 194
BstACI GRCGYC 1 cut(s) 309
BstC8I GCNNGC 2 cut(s) 111, 206
BstDEI CTNAG 1 cut(s) 212
BstDSI CCRYGG 1 cut(s) 289
BstFNI CGCG 2 cut(s) 121, 291
BstH2I RGCGCY 1 cut(s) 312
BstHHI GCGC 2 cut(s) 82, 311
BstKTI GATC 3 cut(s) 15, 93, 147
BstMBI GATC 3 cut(s) 12, 90, 144
BstMWI GCNNNNNNNGC 1 cut(s) 127
BstNSI RCATGY 1 cut(s) 208
BstSFI CTRYAG 1 cut(s) 222
BstUI CGCG 2 cut(s) 121, 291
BstV1I GCAGC 3 cut(s) 118, 195, 236
BstV2I GAAGAC 1 cut(s) 308
BsuRI GGCC 2 cut(s) 130, 288
BtgI CCRYGG 1 cut(s) 289
Cac8I GCNNGC 2 cut(s) 111, 206
CaiI CAGNNNCTG 1 cut(s) 234
CfoI GCGC 2 cut(s) 82, 311
Cfr10I RCCGGY 1 cut(s) 130
Cfr13I GGNCC 1 cut(s) 52
Cfr42I CCGCGG 1 cut(s) 292
CviAII CATG 1 cut(s) 205
CviJI RGCY 7 cut(s) 5, 22, 130, 166, 227, 288, 323
CviKI_1 RGCY 7 cut(s) 5, 22, 130, 166, 227, 288, 323
DdeI CTNAG 1 cut(s) 212
DinI GGCGCC 1 cut(s) 310
DpnI GATC 3 cut(s) 14, 92, 146
DpnII GATC 3 cut(s) 12, 90, 144
EaeI YGGCCR 1 cut(s) 286
Eam1104I CTCTTC 2 cut(s) 54, 194
EarI CTCTTC 2 cut(s) 54, 194
Eco47I GGWCC 1 cut(s) 52
Eco57I CTGAAG 1 cut(s) 188
EcoO109I RGGNCCY 1 cut(s) 52
EgeI GGCGCC 1 cut(s) 310
EheI GGCGCC 1 cut(s) 310
FaeI CATG 1 cut(s) 208
FaiI YATR 6 cut(s) 11, 25, 27, 206, 218, 243
FatI CATG 1 cut(s) 204
FauI CCCGC 1 cut(s) 284
FauNDI CATATG 1 cut(s) 25
FbaI TGATCA 1 cut(s) 12
Fnu4HI GCNGC 4 cut(s) 107, 209, 225, 289
Fsp4HI GCNGC 4 cut(s) 107, 209, 225, 289
GlaI GCGC 2 cut(s) 81, 310
GluI GCNGC 4 cut(s) 107, 209, 225, 289
HaeII RGCGCY 1 cut(s) 312
HaeIII GGCC 2 cut(s) 130, 288
HapII CCGG 1 cut(s) 131
HhaI GCGC 2 cut(s) 82, 311
Hin1I GRCGYC 1 cut(s) 309
Hin1II CATG 1 cut(s) 208
Hin6I GCGC 2 cut(s) 80, 309
HinP1I GCGC 2 cut(s) 80, 309
HincII GTYRAC 1 cut(s) 260
HindII GTYRAC 1 cut(s) 260
HinfI GANTC 1 cut(s) 231
HpaII CCGG 1 cut(s) 131
HphI GGTGA 1 cut(s) 145
Hpy166II GTNNAC 2 cut(s) 260, 330
Hpy188I TCNGA 2 cut(s) 17, 149
Hpy188III TCNNGA 1 cut(s) 88
Hpy8I GTNNAC 2 cut(s) 260, 330
Hpy99I CGWCG 1 cut(s) 78
HpyAV CCTTC 1 cut(s) 120
HpyCH4V TGCA 3 cut(s) 106, 224, 273
HpyF10VI GCNNNNNNNGC 1 cut(s) 127
HpyF3I CTNAG 1 cut(s) 212
Hsp92I GRCGYC 1 cut(s) 309
Hsp92II CATG 1 cut(s) 208
HspAI GCGC 2 cut(s) 80, 309
KasI GGCGCC 1 cut(s) 308
Ksp22I TGATCA 1 cut(s) 12
KspI CCGCGG 1 cut(s) 292
Kzo9I GATC 3 cut(s) 12, 90, 144
LguI GCTCTTC 1 cut(s) 194
LpnPI CCDG 4 cut(s) 69, 144, 241, 325
Lsp1109I GCAGC 3 cut(s) 118, 195, 236
MalI GATC 3 cut(s) 14, 92, 146
MboI GATC 3 cut(s) 12, 90, 144
MboII GAAGA 5 cut(s) 71, 135, 181, 211, 308
MluCI AATT 1 cut(s) 136
Mly113I GGCGCC 1 cut(s) 309
MlyI GAGTC 1 cut(s) 240
MnlI CCTC 6 cut(s) 43, 55, 135, 171, 189, 289
MseI TTAA 2 cut(s) 185, 334
MspA1I CMGCKG 1 cut(s) 291
MspI CCGG 1 cut(s) 131
MvnI CGCG 2 cut(s) 121, 291
MwoI GCNNNNNNNGC 1 cut(s) 127
NarI GGCGCC 1 cut(s) 309
NdeI CATATG 1 cut(s) 25
NdeII GATC 3 cut(s) 12, 90, 144
NlaIII CATG 1 cut(s) 208
NlaIV GGNNCC 3 cut(s) 54, 301, 310
NspI RCATGY 1 cut(s) 208
PaeI GCATGC 1 cut(s) 208
PciSI GCTCTTC 1 cut(s) 194
PkrI GCNGC 4 cut(s) 108, 210, 226, 290
PleI GAGTC 1 cut(s) 239
PluTI GGCGCC 1 cut(s) 312
PpsI GAGTC 1 cut(s) 239
PpuMI RGGWCCY 1 cut(s) 52
PsiI TTATAA 1 cut(s) 243
Psp5II RGGWCCY 1 cut(s) 52
PspN4I GGNNCC 3 cut(s) 54, 301, 310
PspPI GGNCC 1 cut(s) 52
PspPPI RGGWCCY 1 cut(s) 52
PstI CTGCAG 1 cut(s) 226
PstNI CAGNNNCTG 1 cut(s) 234
SacII CCGCGG 1 cut(s) 292
SapI GCTCTTC 1 cut(s) 194
SaqAI TTAA 2 cut(s) 185, 334
SatI GCNGC 4 cut(s) 107, 209, 225, 289
Sau3AI GATC 3 cut(s) 12, 90, 144
Sau96I GGNCC 1 cut(s) 52
SchI GAGTC 1 cut(s) 240
SetI ASST 3 cut(s) 66, 168, 325
SfcI CTRYAG 1 cut(s) 222
SfoI GGCGCC 1 cut(s) 310
Sfr303I CCGCGG 1 cut(s) 292
SgrBI CCGCGG 1 cut(s) 292
SinI GGWCC 1 cut(s) 52
SphI GCATGC 1 cut(s) 208
Sse9I AATT 1 cut(s) 136
SsiI CCGC 2 cut(s) 289, 291
SspDI GGCGCC 1 cut(s) 308
TaqI TCGA 1 cut(s) 73
TasI AATT 1 cut(s) 136
TauI GCSGC 1 cut(s) 291
Tru1I TTAA 2 cut(s) 185, 334
Tru9I TTAA 2 cut(s) 185, 334
TseI GCWGC 3 cut(s) 106, 208, 224
TspDTI ATGAA 1 cut(s) 59
VpaK11BI GGWCC 1 cut(s) 52
XapI RAATTY 1 cut(s) 136
XceI RCATGY 1 cut(s) 208
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.